Wall clock time and date at job start Wed Apr 15 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 O 1.21282 * 119.99544 * 119.99884 * 4 2 1 6 6 N 1.34774 * 120.00011 * 300.00244 * 4 2 1 7 7 C 1.46502 * 120.00006 * 359.97438 * 6 4 2 8 8 C 1.46500 * 119.99881 * 179.97438 * 6 4 2 9 9 C 1.50700 * 109.47003 * 90.00049 * 8 6 4 10 10 H 1.08004 * 120.00201 * 359.97438 * 9 8 6 11 11 C 1.37874 * 119.99836 * 180.02562 * 9 8 6 12 12 N 1.31516 * 120.00342 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99838 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47080 * 59.99992 * 13 11 9 15 15 H 1.48503 * 109.47036 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47287 * 299.99714 * 13 11 9 17 17 N 1.46894 * 109.47515 * 239.99762 * 2 1 3 18 18 C 1.46956 * 111.00023 * 306.04822 * 17 2 1 19 19 C 1.53049 * 109.36639 * 183.18598 * 18 17 2 20 20 N 1.46960 * 109.36417 * 301.59794 * 19 18 17 21 21 C 1.46899 * 111.00175 * 183.18729 * 20 19 18 22 22 C 1.46956 * 110.87891 * 59.31934 * 20 19 18 23 23 H 1.09003 * 109.49085 * 60.66991 * 22 20 19 24 24 C 1.53006 * 109.48897 * 180.71247 * 22 20 19 25 25 C 1.46960 * 110.99878 * 69.84510 * 17 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 29 29 H 1.09005 * 109.46966 * 89.99945 * 7 6 4 30 30 H 1.09001 * 109.47307 * 210.00012 * 7 6 4 31 31 H 1.09000 * 109.47042 * 329.99997 * 7 6 4 32 32 H 1.08998 * 109.47195 * 209.99758 * 8 6 4 33 33 H 1.09004 * 109.46838 * 330.00163 * 8 6 4 34 34 H 0.96991 * 120.00182 * 180.02562 * 12 11 9 35 35 H 1.08996 * 109.49116 * 303.15397 * 18 17 2 36 36 H 1.09003 * 109.49085 * 63.19541 * 18 17 2 37 37 H 1.08999 * 109.49228 * 61.55908 * 19 18 17 38 38 H 1.08998 * 109.49205 * 181.63453 * 19 18 17 39 39 H 1.09005 * 109.46968 * 63.95320 * 21 20 19 40 40 H 1.09003 * 109.47304 * 183.95209 * 21 20 19 41 41 H 1.09005 * 109.47303 * 303.95748 * 21 20 19 42 42 H 1.09001 * 109.47221 * 60.00080 * 24 22 20 43 43 H 1.09000 * 109.47055 * 179.97438 * 24 22 20 44 44 H 1.09001 * 109.46822 * 299.99713 * 24 22 20 45 45 H 1.08995 * 109.49128 * 296.78139 * 25 17 2 46 46 H 1.08996 * 109.48962 * 56.84593 * 25 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 8 2.7296 -1.6965 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8649 0.9416 2.5890 8 6 2.1946 -0.9408 3.6508 9 6 3.5223 -0.3578 4.0612 10 1 3.9592 0.4467 3.4881 11 6 4.1797 -0.8520 5.1677 12 7 3.6485 -1.8326 5.8648 13 14 5.8251 -0.1288 5.6769 14 1 5.6599 1.3168 5.9737 15 1 6.3198 -0.8292 6.8894 16 1 6.8035 -0.2988 4.5727 17 7 2.0197 -0.6925 -1.1993 18 6 1.4341 -2.0360 -1.3077 19 6 2.0284 -2.7521 -2.5228 20 7 1.7583 -1.9638 -3.7333 21 6 2.2480 -2.6563 -4.9327 22 6 2.3439 -0.6203 -3.6249 23 1 3.4243 -0.7029 -3.5062 24 6 2.0292 0.1775 -4.8920 25 6 1.7496 0.0958 -2.4098 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 -0.1833 0.6440 2.6221 30 1 1.1227 1.4668 3.5086 31 1 1.0288 1.6003 1.7362 32 1 1.4766 -0.8152 4.4612 33 1 2.3154 -2.0021 3.4335 34 1 4.1108 -2.1800 6.6435 35 1 1.6583 -2.6043 -0.4051 36 1 0.3538 -1.9533 -1.4264 37 1 3.1052 -2.8590 -2.3913 38 1 1.5742 -3.7379 -2.6221 39 1 1.6985 -3.5885 -5.0638 40 1 2.0988 -2.0207 -5.8056 41 1 3.3101 -2.8735 -4.8187 42 1 0.9487 0.2607 -5.0100 43 1 2.4632 1.1741 -4.8111 44 1 2.4509 -0.3337 -5.7573 45 1 0.6729 0.2028 -2.5415 46 1 2.2038 1.0817 -2.3106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000761072839.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:55 Heat of formation + Delta-G solvation = -30.159400 kcal Electronic energy + Delta-G solvation = -23902.030641 eV Core-core repulsion = 20633.462805 eV Total energy + Delta-G solvation = -3268.567836 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44426 -39.92711 -37.03388 -36.53664 -34.77333 -33.39157 -32.22810 -29.69750 -28.77626 -27.66654 -27.35341 -25.91712 -24.70652 -23.94807 -22.45633 -20.45910 -19.84904 -18.69793 -17.90110 -17.33689 -16.85518 -16.50422 -16.34709 -16.16793 -15.76950 -15.56556 -15.40857 -14.76975 -14.54959 -14.31748 -14.03493 -13.94442 -13.57540 -13.38141 -13.31971 -13.08271 -12.91580 -12.80522 -12.72414 -12.64228 -12.55710 -12.41165 -12.20750 -12.10396 -11.93212 -11.78077 -11.66445 -11.45897 -10.64351 -10.36669 -9.43474 -9.36831 -9.13913 -8.22163 -6.37143 1.35621 1.40277 1.47452 1.88594 2.24440 2.41063 2.91010 2.98293 3.07020 3.65730 3.80080 4.02165 4.04880 4.10545 4.19985 4.25189 4.31353 4.40934 4.49389 4.58273 4.63225 4.64087 4.67414 4.74461 4.80553 4.82638 4.88037 4.92003 4.94603 4.96775 5.02386 5.11566 5.15449 5.22955 5.24794 5.37624 5.56979 5.84038 5.92275 5.97069 6.07080 6.17392 6.20722 6.70985 6.83532 7.29274 7.54997 8.84496 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.024551 B = 0.004009 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.223146 B = 6982.412851 C = 7301.922217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.078 3.922 3 H 0.121 0.879 4 C 0.500 3.500 5 O -0.580 6.580 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.262 3.738 9 C -0.543 4.543 10 H 0.052 0.948 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.259 1.259 15 H -0.277 1.277 16 H -0.280 1.280 17 N -0.540 5.540 18 C 0.059 3.941 19 C 0.065 3.935 20 N -0.541 5.541 21 C 0.019 3.981 22 C 0.078 3.922 23 H 0.028 0.972 24 C -0.137 4.137 25 C 0.064 3.936 26 H 0.049 0.951 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.024 0.976 33 H -0.005 1.005 34 H 0.267 0.733 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.018 0.982 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.017 0.983 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 7.111 -20.528 23.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.034 4.034 3 H 0.138 0.862 4 C 0.288 3.712 5 O -0.460 6.460 6 N -0.342 5.342 7 C -0.065 4.065 8 C 0.141 3.859 9 C -0.582 4.582 10 H 0.070 0.930 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.183 1.183 15 H -0.202 1.202 16 H -0.206 1.206 17 N -0.265 5.265 18 C -0.069 4.069 19 C -0.063 4.063 20 N -0.267 5.267 21 C -0.128 4.128 22 C -0.030 4.030 23 H 0.046 0.954 24 C -0.194 4.194 25 C -0.064 4.064 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.013 0.987 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.037 0.963 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.036 0.964 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.074 0.926 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.355 6.496 -20.410 22.991 hybrid contribution 1.180 -0.351 0.975 1.570 sum -7.175 6.145 -19.436 21.610 Atomic orbital electron populations 1.22577 0.93114 1.03048 1.05393 1.21546 0.95829 0.98361 0.87654 0.86168 1.21171 0.80039 0.84706 0.85250 1.90599 1.39594 1.29060 1.86761 1.48130 1.50477 1.29595 1.05997 1.22096 0.94185 0.86559 1.03708 1.18700 0.93634 0.91591 0.81978 1.21688 1.05974 1.19129 1.11373 0.93006 1.25854 1.01775 0.95241 0.96246 1.70042 1.40764 1.27187 1.18873 0.85483 0.78830 0.79178 0.77406 1.18296 1.20244 1.20576 1.61917 1.59584 1.03030 1.01938 1.22150 0.96812 0.89991 0.97929 1.22040 0.97977 0.97031 0.89257 1.62284 1.58773 1.02912 1.02681 1.22515 0.97606 0.99843 0.92855 1.21750 0.95963 0.89231 0.96103 0.95438 1.21829 1.02891 0.99692 0.95029 1.22311 1.00019 0.96601 0.87425 0.93206 0.89120 0.88911 0.90725 0.91612 0.88856 0.95845 0.98702 0.92407 0.92119 0.93274 0.96336 0.89473 0.90715 0.89116 0.96387 0.91282 0.90749 0.91403 0.92554 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.09 8.07 71.98 0.58 -3.51 16 2 C 0.08 2.32 1.93 44.17 0.09 2.40 16 3 H 0.12 3.09 7.29 -2.39 -0.02 3.08 16 4 C 0.50 21.51 6.78 87.66 0.59 22.10 16 5 O -0.58 -31.26 13.91 -3.04 -0.04 -31.30 16 6 N -0.61 -26.29 2.86 -851.10 -2.43 -28.72 16 7 C 0.08 2.26 8.80 127.77 1.12 3.38 16 8 C 0.26 14.48 5.16 85.63 0.44 14.92 16 9 C -0.54 -32.04 9.39 25.60 0.24 -31.80 16 10 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 11 C 0.01 0.45 5.46 84.65 0.46 0.92 16 12 N -0.93 -57.19 13.29 21.45 0.28 -56.91 16 13 Si 0.97 45.78 29.54 68.60 2.03 47.81 16 14 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 N -0.54 -16.51 4.40 -874.88 -3.85 -20.36 16 18 C 0.06 1.86 4.59 86.31 0.40 2.26 16 19 C 0.07 1.82 5.62 86.31 0.48 2.30 16 20 N -0.54 -12.24 4.78 -896.52 -4.29 -16.53 16 21 C 0.02 0.34 9.36 127.69 1.20 1.54 16 22 C 0.08 1.67 2.56 44.92 0.12 1.79 16 23 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 24 C -0.14 -1.94 8.88 71.98 0.64 -1.30 16 25 C 0.06 1.41 4.61 86.31 0.40 1.81 16 26 H 0.05 1.27 6.40 -2.39 -0.02 1.26 16 27 H 0.09 1.55 6.75 -2.39 -0.02 1.53 16 28 H 0.09 1.82 4.53 -2.38 -0.01 1.81 16 29 H 0.07 1.80 6.95 -2.38 -0.02 1.78 16 30 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 31 H 0.09 2.09 6.01 -2.39 -0.01 2.07 16 32 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 33 H -0.01 -0.33 7.42 -2.38 -0.02 -0.35 16 34 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 35 H 0.06 2.42 5.84 -2.39 -0.01 2.41 16 36 H 0.05 1.40 6.41 -2.39 -0.02 1.39 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.09 1.25 5.83 -2.39 -0.01 1.24 16 41 H 0.02 0.34 8.14 -2.38 -0.02 0.32 16 42 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.07 0.85 6.19 -2.39 -0.01 0.84 16 45 H 0.06 1.12 6.75 -2.39 -0.02 1.10 16 46 H 0.09 1.74 8.07 -2.39 -0.02 1.73 16 Total: -1.00 -76.34 345.01 -0.59 -76.93 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.95 Total: 12.25 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 6.76 Total: 16.82 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -10.28 Total: -122.51 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.04 Total: -31.30 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -76.34 -0.59 -76.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000761072839.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.770 kcal (2) G-P(sol) polarization free energy of solvation -76.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds