Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46847 * 110.99834 * 66.04134 * 3 2 1 5 5 C 1.53044 * 109.51754 * 185.84111 * 4 3 2 6 6 C 1.53111 * 109.28302 * 300.82131 * 5 4 3 7 7 C 1.53129 * 109.15942 * 57.65445 * 6 5 4 8 8 H 1.09001 * 109.50088 * 62.28914 * 7 6 5 9 9 N 1.46498 * 109.50060 * 182.36782 * 7 6 5 10 10 C 1.34779 * 119.99685 * 274.99850 * 9 7 6 11 11 O 1.21281 * 120.00485 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99646 * 180.02562 * 10 9 7 13 13 H 1.08999 * 109.47025 * 39.99911 * 12 10 9 14 14 N 1.46901 * 109.46973 * 160.00336 * 12 10 9 15 15 C 1.52998 * 109.46914 * 279.99739 * 12 10 9 16 16 C 1.53005 * 109.46988 * 175.00069 * 15 12 10 17 17 C 1.50693 * 109.47423 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00432 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00475 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47325 * 89.99599 * 21 19 17 23 23 H 1.48498 * 109.47194 * 210.00059 * 21 19 17 24 24 H 1.48504 * 109.46542 * 329.99589 * 21 19 17 25 25 C 1.46839 * 111.00039 * 190.25745 * 3 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 31 31 H 1.08998 * 109.46487 * 305.85659 * 4 3 2 32 32 H 1.08995 * 109.46107 * 65.83114 * 4 3 2 33 33 H 1.08995 * 109.50348 * 60.77041 * 5 4 3 34 34 H 1.09001 * 109.49621 * 180.88154 * 5 4 3 35 35 H 1.08996 * 109.52773 * 177.56371 * 6 5 4 36 36 H 1.09004 * 109.52480 * 297.69044 * 6 5 4 37 37 H 0.97002 * 120.00174 * 95.00850 * 9 7 6 38 38 H 1.00903 * 110.99748 * 296.04004 * 14 12 10 39 39 H 1.00897 * 111.00060 * 59.99756 * 14 12 10 40 40 H 1.08994 * 109.47394 * 294.99998 * 15 12 10 41 41 H 1.09002 * 109.47241 * 55.00886 * 15 12 10 42 42 H 1.09008 * 109.47078 * 300.00275 * 16 15 12 43 43 H 1.09000 * 109.47197 * 60.00377 * 16 15 12 44 44 H 0.97005 * 119.99933 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.46401 * 294.17270 * 25 3 2 46 46 H 1.09000 * 109.46621 * 54.13950 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.0656 3.5423 1.1595 6 6 3.5713 3.6471 0.9025 7 6 3.9159 2.8880 -0.3821 8 1 3.4022 3.3488 -1.2259 9 7 5.3630 2.9356 -0.6050 10 6 5.9132 3.9921 -1.2356 11 8 5.2104 4.9036 -1.6180 12 6 7.4018 4.0408 -1.4655 13 1 7.7588 3.0497 -1.7454 14 7 7.6997 4.9917 -2.5449 15 6 8.1016 4.4912 -0.1816 16 6 9.6177 4.4213 -0.3757 17 6 10.3070 4.8643 0.8890 18 1 9.7223 5.1652 1.7458 19 6 11.6841 4.8854 0.9525 20 7 12.3962 4.5185 -0.0905 21 14 12.5386 5.4339 2.5205 22 1 12.7639 4.2579 3.3988 23 1 13.8437 6.0558 2.1814 24 1 11.6873 6.4241 3.2277 25 6 3.4669 1.4315 -0.2441 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.5963 1.9884 1.4216 32 1 2.2030 1.5997 2.0812 33 1 1.5228 4.0133 0.3401 34 1 1.8204 4.0445 2.0954 35 1 3.8501 4.6950 0.7922 36 1 4.1152 3.2117 1.7408 37 1 5.9252 2.2068 -0.2990 38 1 7.3021 4.6824 -3.4192 39 1 7.3782 5.9186 -2.3092 40 1 7.8119 5.5162 0.0498 41 1 7.8100 3.8369 0.6399 42 1 9.9074 3.3962 -0.6071 43 1 9.9094 5.0756 -1.1971 44 1 13.3651 4.5330 -0.0457 45 1 3.9912 0.9674 0.5913 46 1 3.6979 0.8917 -1.1625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424157116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -56.865724 kcal Electronic energy + Delta-G solvation = -22751.696559 eV Core-core repulsion = 19481.970650 eV Total energy + Delta-G solvation = -3269.725909 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.21398 -38.92253 -35.58410 -34.97747 -33.29708 -32.78115 -30.74762 -30.08940 -29.39320 -26.34538 -24.87004 -23.87712 -22.90791 -21.60905 -20.55700 -20.21278 -19.64207 -17.16305 -16.76582 -16.22352 -15.78104 -15.52831 -15.35479 -14.78087 -14.67158 -14.38042 -14.30974 -13.88505 -13.73135 -13.47929 -13.34348 -12.71874 -12.32762 -12.25791 -12.13367 -11.99346 -11.65557 -11.56896 -11.45145 -10.99401 -10.94604 -10.89654 -10.71396 -10.62055 -10.54533 -10.08052 -9.79248 -9.36248 -9.03222 -8.98803 -8.67926 -8.34025 -8.19027 -5.93760 -3.95882 2.80837 3.07090 3.34247 3.40872 3.44309 3.74358 4.47524 4.50231 4.55836 4.67193 4.75139 4.87094 4.91452 5.02582 5.07588 5.12645 5.15036 5.22429 5.37355 5.40016 5.41777 5.47952 5.55037 5.59614 5.62282 5.72214 5.83901 5.85524 5.85775 6.06876 6.15820 6.42596 6.47697 6.66417 6.72841 6.76703 7.09620 7.40204 7.63047 7.76418 7.82068 7.96721 8.13593 8.35835 8.48753 9.12218 9.67253 11.17148 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.003075 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.772771 B = 9103.550966 C = 9557.289773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 N -0.536 5.536 4 C 0.051 3.949 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.148 3.852 8 H 0.093 0.907 9 N -0.728 5.728 10 C 0.486 3.514 11 O -0.552 6.552 12 C 0.078 3.922 13 H 0.097 0.903 14 N -0.807 5.807 15 C -0.094 4.094 16 C 0.031 3.969 17 C -0.522 4.522 18 H 0.052 0.948 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.889 3.111 22 H -0.282 1.282 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.051 3.949 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.401 0.599 38 H 0.334 0.666 39 H 0.348 0.652 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.013 0.987 43 H 0.035 0.965 44 H 0.259 0.741 45 H 0.039 0.961 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.719 -9.359 0.305 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.261 5.261 4 C -0.077 4.077 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.043 3.957 8 H 0.111 0.889 9 N -0.380 5.380 10 C 0.272 3.728 11 O -0.429 6.429 12 C -0.038 4.038 13 H 0.115 0.885 14 N -0.335 5.335 15 C -0.133 4.133 16 C -0.006 4.006 17 C -0.560 4.560 18 H 0.070 0.930 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.208 1.208 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.078 4.078 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.235 0.765 38 H 0.145 0.855 39 H 0.162 0.838 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.486 -8.631 -0.292 24.088 hybrid contribution 0.158 -0.462 1.700 1.769 sum -22.328 -9.094 1.408 24.150 Atomic orbital electron populations 1.21809 0.94705 1.01575 1.02591 1.22068 0.96235 0.88450 1.00899 1.61845 1.13183 1.15834 1.35227 1.22205 1.00969 0.94742 0.89765 1.21540 0.95944 0.95428 1.02298 1.21989 0.95995 1.01714 0.97425 1.20840 0.81281 0.94871 0.98737 0.88865 1.46177 1.07844 1.23583 1.60393 1.22731 0.93055 0.81152 0.75895 1.90644 1.63995 1.36848 1.51433 1.21839 0.87050 0.98816 0.96066 0.88498 1.59000 1.65210 1.05583 1.03688 1.21644 1.00102 1.00019 0.91503 1.19016 0.86739 0.97530 0.97310 1.21279 0.91377 1.44272 0.99111 0.93020 1.24992 0.97659 0.95581 0.96116 1.69976 1.05801 1.48250 1.29170 0.86653 0.79086 0.78795 0.83792 1.20801 1.21246 1.19983 1.22267 0.87952 0.96318 1.01263 0.92259 0.91732 0.92624 0.94850 0.90667 0.90293 0.94792 0.90885 0.91155 0.90979 0.91939 0.76491 0.85464 0.83837 0.92885 0.92912 0.96913 0.94657 0.93101 0.94251 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.85 37.16 0.37 -0.57 16 2 C 0.05 0.38 5.68 -3.82 -0.02 0.35 16 3 N -0.54 -4.81 4.65 -234.67 -1.09 -5.90 16 4 C 0.05 0.43 5.29 -3.83 -0.02 0.41 16 5 C -0.11 -1.06 6.09 -26.65 -0.16 -1.22 16 6 C -0.13 -1.51 5.58 -26.61 -0.15 -1.66 16 7 C 0.15 1.71 2.61 -67.85 -0.18 1.53 16 8 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 9 N -0.73 -9.04 5.08 -53.72 -0.27 -9.31 16 10 C 0.49 7.60 7.03 -10.98 -0.08 7.52 16 11 O -0.55 -10.15 15.92 5.56 0.09 -10.06 16 12 C 0.08 1.31 3.15 -68.86 -0.22 1.09 16 13 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 14 N -0.81 -13.69 8.44 -5.65 -0.05 -13.74 16 15 C -0.09 -1.90 4.78 -26.73 -0.13 -2.03 16 16 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 17 C -0.52 -14.78 9.11 -34.45 -0.31 -15.09 16 18 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.97 13.29 55.43 0.74 -26.24 16 21 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.05 0.47 4.93 -3.84 -0.02 0.45 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.34 6.44 -51.93 -0.33 0.01 16 29 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 30 H 0.07 0.52 7.98 -51.93 -0.41 0.11 16 31 H 0.08 0.58 6.22 -51.93 -0.32 0.26 16 32 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 4.23 8.60 -40.82 -0.35 3.88 16 38 H 0.33 4.92 9.06 -39.29 -0.36 4.57 16 39 H 0.35 6.01 8.58 -39.29 -0.34 5.67 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 43 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.72 8.01 -51.93 -0.42 0.30 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -32.08 364.78 -9.63 -41.71 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -8.36 Total: 8.28 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.15 Total: -6.98 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.68 Total: -55.19 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.06 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.08 -9.63 -41.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.156 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds