Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46847 * 110.99834 * 66.04134 * 3 2 1 5 5 C 1.53044 * 109.51754 * 185.84111 * 4 3 2 6 6 C 1.53111 * 109.28302 * 300.82131 * 5 4 3 7 7 C 1.53129 * 109.15942 * 57.65445 * 6 5 4 8 8 H 1.09001 * 109.50088 * 62.28914 * 7 6 5 9 9 N 1.46498 * 109.50060 * 182.36782 * 7 6 5 10 10 C 1.34779 * 119.99685 * 274.99850 * 9 7 6 11 11 O 1.21281 * 120.00485 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99646 * 180.02562 * 10 9 7 13 13 H 1.08999 * 109.47025 * 39.99911 * 12 10 9 14 14 N 1.46901 * 109.46973 * 160.00336 * 12 10 9 15 15 C 1.52998 * 109.46914 * 279.99739 * 12 10 9 16 16 C 1.53005 * 109.46988 * 175.00069 * 15 12 10 17 17 C 1.50693 * 109.47423 * 180.02562 * 16 15 12 18 18 H 1.08005 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.00432 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99919 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00475 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47325 * 89.99599 * 21 19 17 23 23 H 1.48498 * 109.47194 * 210.00059 * 21 19 17 24 24 H 1.48504 * 109.46542 * 329.99589 * 21 19 17 25 25 C 1.46839 * 111.00039 * 190.25745 * 3 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 31 31 H 1.08998 * 109.46487 * 305.85659 * 4 3 2 32 32 H 1.08995 * 109.46107 * 65.83114 * 4 3 2 33 33 H 1.08995 * 109.50348 * 60.77041 * 5 4 3 34 34 H 1.09001 * 109.49621 * 180.88154 * 5 4 3 35 35 H 1.08996 * 109.52773 * 177.56371 * 6 5 4 36 36 H 1.09004 * 109.52480 * 297.69044 * 6 5 4 37 37 H 0.97002 * 120.00174 * 95.00850 * 9 7 6 38 38 H 1.00903 * 110.99748 * 296.04004 * 14 12 10 39 39 H 1.00897 * 111.00060 * 59.99756 * 14 12 10 40 40 H 1.08994 * 109.47394 * 294.99998 * 15 12 10 41 41 H 1.09002 * 109.47241 * 55.00886 * 15 12 10 42 42 H 1.09008 * 109.47078 * 300.00275 * 16 15 12 43 43 H 1.09000 * 109.47197 * 60.00377 * 16 15 12 44 44 H 0.97005 * 119.99933 * 180.02562 * 20 19 17 45 45 H 1.09004 * 109.46401 * 294.17270 * 25 3 2 46 46 H 1.09000 * 109.46621 * 54.13950 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6703 2.0667 1.2528 5 6 2.0656 3.5423 1.1595 6 6 3.5713 3.6471 0.9025 7 6 3.9159 2.8880 -0.3821 8 1 3.4022 3.3488 -1.2259 9 7 5.3630 2.9356 -0.6050 10 6 5.9132 3.9921 -1.2356 11 8 5.2104 4.9036 -1.6180 12 6 7.4018 4.0408 -1.4655 13 1 7.7588 3.0497 -1.7454 14 7 7.6997 4.9917 -2.5449 15 6 8.1016 4.4912 -0.1816 16 6 9.6177 4.4213 -0.3757 17 6 10.3070 4.8643 0.8890 18 1 9.7223 5.1652 1.7458 19 6 11.6841 4.8854 0.9525 20 7 12.3962 4.5185 -0.0905 21 14 12.5386 5.4339 2.5205 22 1 12.7639 4.2579 3.3988 23 1 13.8437 6.0558 2.1814 24 1 11.6873 6.4241 3.2277 25 6 3.4669 1.4315 -0.2441 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.5963 1.9884 1.4216 32 1 2.2030 1.5997 2.0812 33 1 1.5228 4.0133 0.3401 34 1 1.8204 4.0445 2.0954 35 1 3.8501 4.6950 0.7922 36 1 4.1152 3.2117 1.7408 37 1 5.9252 2.2068 -0.2990 38 1 7.3021 4.6824 -3.4192 39 1 7.3782 5.9186 -2.3092 40 1 7.8119 5.5162 0.0498 41 1 7.8100 3.8369 0.6399 42 1 9.9074 3.3962 -0.6071 43 1 9.9094 5.0756 -1.1971 44 1 13.3651 4.5330 -0.0457 45 1 3.9912 0.9674 0.5913 46 1 3.6979 0.8917 -1.1625 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424157116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -81.031699 kcal Electronic energy + Delta-G solvation = -22752.744475 eV Core-core repulsion = 19481.970650 eV Total energy + Delta-G solvation = -3270.773824 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32812 -39.86025 -36.89645 -36.21718 -34.80976 -34.14689 -31.92922 -31.45856 -30.24817 -28.03675 -25.84531 -25.24212 -23.85346 -22.64433 -21.96329 -21.29801 -20.75727 -18.67715 -18.04737 -17.68431 -16.99049 -16.67377 -16.40831 -16.12233 -15.89051 -15.50985 -15.27906 -15.00886 -14.82554 -14.54640 -14.27752 -14.24683 -13.79956 -13.49777 -13.39620 -12.83088 -12.79614 -12.71204 -12.52900 -12.44130 -12.27667 -12.14181 -11.84112 -11.77132 -11.66756 -11.57297 -11.48544 -11.23889 -10.97335 -10.48821 -10.12249 -9.61314 -9.33727 -8.13828 -6.24030 1.41295 1.42908 1.51625 1.54142 2.05207 2.44501 2.98954 3.19193 3.56447 3.66248 3.76974 3.87975 3.98126 4.04124 4.12489 4.25483 4.28204 4.32891 4.40040 4.49576 4.55516 4.64247 4.67551 4.78488 4.81263 4.88005 4.94361 4.99471 5.04267 5.09323 5.17321 5.25106 5.28894 5.37418 5.45387 5.57339 5.85076 5.99113 6.05706 6.09162 6.11792 6.30719 6.45920 6.54632 6.94809 7.16225 7.44084 8.97404 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023528 B = 0.003075 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.772771 B = 9103.550966 C = 9557.289773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 N -0.548 5.548 4 C 0.053 3.947 5 C -0.109 4.109 6 C -0.130 4.130 7 C 0.151 3.849 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.492 3.508 11 O -0.581 6.581 12 C 0.086 3.914 13 H 0.111 0.889 14 N -0.819 5.819 15 C -0.080 4.080 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.267 1.267 25 C 0.058 3.942 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.067 0.933 37 H 0.413 0.587 38 H 0.346 0.654 39 H 0.345 0.655 40 H 0.040 0.960 41 H 0.067 0.933 42 H -0.005 1.005 43 H 0.005 0.995 44 H 0.262 0.738 45 H 0.049 0.951 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.785 -10.573 1.755 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 N -0.273 5.273 4 C -0.074 4.074 5 C -0.148 4.148 6 C -0.168 4.168 7 C 0.045 3.955 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.277 3.723 11 O -0.460 6.460 12 C -0.030 4.030 13 H 0.129 0.871 14 N -0.348 5.348 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.581 4.581 18 H 0.073 0.927 19 C -0.196 4.196 20 N -0.570 5.570 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.192 1.192 25 C -0.071 4.071 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.249 0.751 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.013 0.987 43 H 0.023 0.977 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.575 -9.888 1.171 25.591 hybrid contribution 0.467 -0.100 1.217 1.307 sum -23.108 -9.988 2.387 25.287 Atomic orbital electron populations 1.21786 0.93924 1.02354 1.02269 1.22130 0.96851 0.87422 1.01297 1.61852 1.12731 1.17068 1.35682 1.22202 1.01839 0.93703 0.89654 1.21515 0.94140 0.96546 1.02565 1.21943 0.97676 0.99871 0.97360 1.20859 0.80130 0.96549 0.97922 0.91193 1.46049 1.08639 1.22866 1.58890 1.22343 0.92297 0.81490 0.76123 1.90639 1.64377 1.38143 1.52883 1.21645 0.87713 0.99206 0.94448 0.87088 1.58982 1.65706 1.05601 1.04494 1.21372 0.96762 0.99845 0.93877 1.18827 0.90194 0.95409 0.95349 1.21730 0.92080 1.44203 1.00115 0.92681 1.25901 0.98564 0.95575 0.99603 1.70107 1.06173 1.49323 1.31415 0.85539 0.77755 0.78709 0.79575 1.19599 1.20951 1.19164 1.22164 0.88566 0.94343 1.01979 0.90971 0.92560 0.92395 0.94325 0.90359 0.88969 0.94384 0.91837 0.89877 0.93764 0.91458 0.75070 0.84033 0.84193 0.94105 0.91452 0.98676 0.97653 0.92927 0.93301 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.85 71.98 0.71 -0.80 16 2 C 0.05 0.62 5.68 86.30 0.49 1.11 16 3 N -0.55 -8.78 4.65 -896.37 -4.17 -12.95 16 4 C 0.05 0.79 5.29 86.33 0.46 1.24 16 5 C -0.11 -1.91 6.09 30.65 0.19 -1.72 16 6 C -0.13 -2.86 5.58 30.67 0.17 -2.69 16 7 C 0.15 3.35 2.61 45.05 0.12 3.46 16 8 H 0.07 1.93 7.58 -2.39 -0.02 1.91 16 9 N -0.71 -16.90 5.08 -442.26 -2.25 -19.15 16 10 C 0.49 15.15 7.03 87.66 0.62 15.77 16 11 O -0.58 -21.46 15.92 -3.03 -0.05 -21.51 16 12 C 0.09 2.83 3.15 44.17 0.14 2.97 16 13 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 14 N -0.82 -27.99 8.44 -171.80 -1.45 -29.44 16 15 C -0.08 -3.22 4.78 30.60 0.15 -3.08 16 16 C 0.04 2.05 4.86 29.85 0.15 2.19 16 17 C -0.54 -30.88 9.11 25.60 0.23 -30.64 16 18 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 19 C 0.00 0.08 5.46 84.65 0.46 0.54 16 20 N -0.93 -56.79 13.29 21.44 0.28 -56.51 16 21 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 25 C 0.06 0.98 4.93 86.33 0.43 1.40 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.57 6.44 -2.38 -0.02 0.56 16 29 H 0.04 0.45 8.12 -2.39 -0.02 0.43 16 30 H 0.08 0.92 7.98 -2.39 -0.02 0.90 16 31 H 0.09 1.13 6.22 -2.39 -0.01 1.12 16 32 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.41 7.92 8.60 -92.71 -0.80 7.12 16 38 H 0.35 10.18 9.06 -89.69 -0.81 9.36 16 39 H 0.34 12.13 8.58 -89.70 -0.77 11.36 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H -0.01 -0.28 8.14 -2.38 -0.02 -0.30 16 43 H 0.01 0.29 7.75 -2.39 -0.02 0.27 16 44 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 45 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 46 H 0.09 1.36 8.01 -2.39 -0.02 1.34 16 Total: -1.00 -69.03 364.78 -2.72 -71.75 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -1.41 Total: 31.55 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 4.30 Total: -10.24 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -7.58 Total: -118.05 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -69.03 -2.72 -71.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424157116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.285 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds