Wall clock time and date at job start Wed Apr 15 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47359 * 2 1 4 4 C 1.46842 * 111.00452 * 170.00176 * 3 2 1 5 5 C 1.53036 * 109.52481 * 185.83902 * 4 3 2 6 6 C 1.53122 * 109.27683 * 300.81862 * 5 4 3 7 7 N 1.46496 * 109.51884 * 177.55876 * 6 5 4 8 8 C 1.34783 * 119.99985 * 155.12835 * 7 6 5 9 9 O 1.21282 * 119.99904 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99988 * 179.97438 * 8 7 6 11 11 N 1.46897 * 109.46908 * 180.02562 * 10 8 7 12 12 C 1.46906 * 111.00172 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.46389 * 324.99645 * 12 11 10 14 14 C 1.52997 * 109.47302 * 84.99810 * 12 11 10 15 15 C 1.50697 * 109.47180 * 205.00376 * 12 11 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47155 * 89.99872 * 19 17 15 21 21 H 1.48495 * 109.46964 * 209.99990 * 19 17 15 22 22 H 1.48499 * 109.46909 * 330.00049 * 19 17 15 23 23 C 1.53118 * 109.21278 * 57.62556 * 6 5 4 24 24 C 1.46844 * 110.99646 * 294.21285 * 3 2 1 25 25 H 1.08999 * 109.46892 * 299.99815 * 1 2 3 26 26 H 1.08994 * 109.47596 * 60.00009 * 1 2 3 27 27 H 1.09005 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47066 * 240.00362 * 2 1 3 29 29 H 1.08997 * 109.47402 * 120.00480 * 2 1 3 30 30 H 1.09004 * 109.46021 * 65.82006 * 4 3 2 31 31 H 1.09004 * 109.46050 * 305.85900 * 4 3 2 32 32 H 1.08997 * 109.50020 * 180.88055 * 5 4 3 33 33 H 1.09000 * 109.50114 * 60.76397 * 5 4 3 34 34 H 1.08998 * 109.52212 * 297.68443 * 6 5 4 35 35 H 0.97005 * 120.00371 * 335.12933 * 7 6 5 36 36 H 1.09005 * 109.46789 * 60.00435 * 10 8 7 37 37 H 1.09001 * 109.47726 * 300.00225 * 10 8 7 38 38 H 1.00896 * 111.00123 * 56.05205 * 11 10 8 39 39 H 1.09002 * 109.47153 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.46832 * 60.00356 * 14 12 11 41 41 H 1.09004 * 109.47261 * 300.00337 * 14 12 11 42 42 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.50468 * 62.31067 * 23 6 5 44 44 H 1.08992 * 109.50569 * 182.43128 * 23 6 5 45 45 H 1.08999 * 109.46733 * 294.17155 * 24 3 2 46 46 H 1.09006 * 109.46644 * 54.15288 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4679 1.4311 0.2380 5 6 3.9174 2.8875 0.3761 6 6 3.5675 3.6482 -0.9058 7 7 3.9427 5.0565 -0.7572 8 6 4.2079 5.8021 -1.8482 9 8 4.1354 5.3072 -2.9531 10 6 4.5932 7.2509 -1.6953 11 7 4.8280 7.8377 -3.0214 12 6 5.2073 9.2527 -2.9114 13 1 4.6724 9.7083 -2.0781 14 6 6.7142 9.3595 -2.6698 15 6 4.8512 9.9689 -4.1885 16 1 4.3897 9.4272 -5.0009 17 6 5.1145 11.3160 -4.3199 18 7 5.6760 11.9757 -3.3305 19 14 4.6738 12.2037 -5.9034 20 1 3.2915 12.7370 -5.8036 21 1 5.6223 13.3250 -6.1227 22 1 4.7572 11.2547 -7.0425 23 6 2.0609 3.5440 -1.1583 24 6 1.6650 2.0685 -1.2503 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9887 0.9682 -0.6003 31 1 3.7028 0.8900 1.1546 32 1 4.9949 2.9220 0.5372 33 1 3.4074 3.3470 1.2228 34 1 4.1087 3.2139 -1.7464 35 1 4.0003 5.4525 0.1265 36 1 5.5029 7.3239 -1.0991 37 1 3.7879 7.7906 -1.1970 38 1 4.0200 7.7248 -3.6150 39 1 6.9955 10.4094 -2.5877 40 1 7.2490 8.9038 -3.5031 41 1 6.9718 8.8414 -1.7459 42 1 5.8609 12.9235 -3.4228 43 1 1.5208 4.0141 -0.3365 44 1 1.8128 4.0474 -2.0927 45 1 2.1942 1.6027 -2.0817 46 1 0.5902 1.9906 -1.4147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602865208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:55 Heat of formation + Delta-G solvation = -41.004680 kcal Electronic energy + Delta-G solvation = -22493.101714 eV Core-core repulsion = 19224.063591 eV Total energy + Delta-G solvation = -3269.038122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01700 -38.69147 -35.82105 -35.16081 -32.70564 -32.36396 -31.16409 -29.75225 -28.78074 -25.81715 -24.99105 -23.91121 -23.33269 -21.65524 -20.33782 -20.02543 -19.65236 -17.25340 -16.63139 -16.08894 -15.60928 -15.57643 -15.21474 -14.79999 -14.63644 -14.14631 -14.00763 -13.61457 -13.55295 -13.27885 -12.98737 -12.72465 -12.44570 -12.16398 -12.04152 -11.78991 -11.58075 -11.44979 -11.33016 -11.24448 -10.89897 -10.81296 -10.75800 -10.68310 -10.34268 -10.12357 -10.04497 -9.36929 -8.91957 -8.82509 -8.63611 -8.46522 -7.27097 -6.02281 -4.07990 3.01260 3.27881 3.31475 3.37869 3.43556 3.56136 4.42230 4.45635 4.56876 4.74657 4.82524 4.89998 5.01710 5.13762 5.14329 5.16408 5.27694 5.28606 5.37846 5.43813 5.45888 5.48346 5.53778 5.65778 5.72589 5.79803 5.88883 5.91375 5.93438 5.98428 6.15699 6.61274 6.76918 6.78881 6.84743 7.11972 7.20080 7.44940 7.68367 7.80636 7.89377 8.27100 8.38468 8.54953 8.68050 9.02404 9.57862 11.04282 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.002656 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.660585 B =10541.213075 C =10992.898147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.540 5.540 4 C 0.060 3.940 5 C -0.123 4.123 6 C 0.146 3.854 7 N -0.736 5.736 8 C 0.514 3.486 9 O -0.526 6.526 10 C 0.043 3.957 11 N -0.673 5.673 12 C 0.212 3.788 13 H 0.002 0.998 14 C -0.125 4.125 15 C -0.517 4.517 16 H 0.061 0.939 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.273 1.273 23 C -0.126 4.126 24 C 0.056 3.944 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.398 0.602 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.340 0.660 39 H 0.082 0.918 40 H 0.033 0.967 41 H 0.003 0.997 42 H 0.261 0.739 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.035 0.965 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.194 -21.315 11.298 25.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.069 4.069 5 C -0.161 4.161 6 C 0.041 3.959 7 N -0.389 5.389 8 C 0.301 3.699 9 O -0.400 6.400 10 C -0.090 4.090 11 N -0.306 5.306 12 C 0.105 3.895 13 H 0.019 0.981 14 C -0.184 4.184 15 C -0.555 4.555 16 H 0.079 0.921 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.726 3.274 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.198 1.198 23 C -0.166 4.166 24 C -0.072 4.072 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.110 0.890 37 H 0.066 0.934 38 H 0.159 0.841 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.053 0.947 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.740 -21.442 10.849 24.958 hybrid contribution -0.590 0.708 -0.729 1.175 sum -7.330 -20.734 10.120 24.208 Atomic orbital electron populations 1.21813 0.94816 1.01501 1.02633 1.22054 0.96219 0.88784 1.00690 1.61999 1.13665 1.15461 1.35418 1.22010 0.87468 0.96503 1.00892 1.21857 1.01363 0.95026 0.97872 1.20899 0.95056 0.81680 0.98281 1.46121 1.72129 1.11099 1.09591 1.21094 0.75649 0.89087 0.84102 1.90667 1.50540 1.73333 1.25452 1.21813 1.00911 0.90242 0.96006 1.60496 1.41926 1.20154 1.07998 1.19157 0.93086 0.80942 0.96356 0.98061 1.21733 0.97952 1.02229 0.96442 1.21257 1.40114 0.93691 1.00474 0.92059 1.24915 0.95006 0.97420 0.96697 1.69893 1.42759 1.08958 1.31398 0.86494 0.78062 0.79229 0.83628 1.20757 1.21203 1.19780 1.21986 0.96030 0.95599 1.02935 1.22108 1.01103 0.94247 0.89775 0.91803 0.92548 0.92365 0.94964 0.90828 0.94632 0.90363 0.90753 0.90463 0.89928 0.76812 0.88996 0.93416 0.84114 0.89977 0.94798 0.97784 0.92931 0.90953 0.90764 0.94686 0.90213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.84 37.16 0.37 -0.60 16 2 C 0.05 0.36 5.68 -3.83 -0.02 0.34 16 3 N -0.54 -4.64 4.66 -234.66 -1.09 -5.74 16 4 C 0.06 0.48 5.46 -3.84 -0.02 0.46 16 5 C -0.12 -1.03 5.57 -26.65 -0.15 -1.18 16 6 C 0.15 1.63 2.52 -67.81 -0.17 1.46 16 7 N -0.74 -8.94 5.08 -53.69 -0.27 -9.21 16 8 C 0.51 8.57 7.83 -10.98 -0.09 8.49 16 9 O -0.53 -10.80 15.87 5.56 0.09 -10.72 16 10 C 0.04 0.77 5.96 -4.98 -0.03 0.75 16 11 N -0.67 -15.24 5.93 -109.22 -0.65 -15.89 16 12 C 0.21 5.44 2.60 -68.86 -0.18 5.26 16 13 H 0.00 0.05 7.80 -51.93 -0.40 -0.36 16 14 C -0.13 -3.14 9.19 37.16 0.34 -2.80 16 15 C -0.52 -14.48 8.59 -34.44 -0.30 -14.78 16 16 H 0.06 1.72 7.62 -52.49 -0.40 1.32 16 17 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.13 -1.38 5.68 -26.64 -0.15 -1.53 16 24 C 0.06 0.53 5.29 -3.83 -0.02 0.51 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.38 6.43 -51.93 -0.33 0.05 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.03 0.23 8.12 -51.92 -0.42 -0.19 16 29 H 0.07 0.46 7.99 -51.93 -0.41 0.05 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.52 8.02 -51.93 -0.42 0.11 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.08 1.12 7.58 -51.93 -0.39 0.72 16 35 H 0.40 3.76 8.60 -40.82 -0.35 3.41 16 36 H 0.09 1.55 7.44 -51.93 -0.39 1.17 16 37 H 0.05 0.80 8.06 -51.93 -0.42 0.38 16 38 H 0.34 7.91 7.92 -39.29 -0.31 7.60 16 39 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 40 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 42 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.08 0.70 6.21 -51.93 -0.32 0.38 16 LS Contribution 360.13 15.07 5.43 5.43 Total: -1.00 -31.30 360.13 -9.62 -40.92 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -8.22 Total: 5.54 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -0.51 Total: -2.02 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -1.39 Total: -55.70 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.30 -9.62 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.088 kcal (2) G-P(sol) polarization free energy of solvation -31.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds