Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47359 * 2 1 4 4 C 1.46842 * 111.00452 * 170.00176 * 3 2 1 5 5 C 1.53036 * 109.52481 * 185.83902 * 4 3 2 6 6 C 1.53122 * 109.27683 * 300.81862 * 5 4 3 7 7 N 1.46496 * 109.51884 * 177.55876 * 6 5 4 8 8 C 1.34783 * 119.99985 * 155.12835 * 7 6 5 9 9 O 1.21282 * 119.99904 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99988 * 179.97438 * 8 7 6 11 11 N 1.46897 * 109.46908 * 180.02562 * 10 8 7 12 12 C 1.46906 * 111.00172 * 180.02562 * 11 10 8 13 13 H 1.08998 * 109.46389 * 324.99645 * 12 11 10 14 14 C 1.52997 * 109.47302 * 84.99810 * 12 11 10 15 15 C 1.50697 * 109.47180 * 205.00376 * 12 11 10 16 16 H 1.07998 * 120.00039 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99815 * 179.97438 * 15 12 11 18 18 N 1.31508 * 119.99915 * 359.97438 * 17 15 12 19 19 Si 1.86805 * 119.99777 * 179.97438 * 17 15 12 20 20 H 1.48497 * 109.47155 * 89.99872 * 19 17 15 21 21 H 1.48495 * 109.46964 * 209.99990 * 19 17 15 22 22 H 1.48499 * 109.46909 * 330.00049 * 19 17 15 23 23 C 1.53118 * 109.21278 * 57.62556 * 6 5 4 24 24 C 1.46844 * 110.99646 * 294.21285 * 3 2 1 25 25 H 1.08999 * 109.46892 * 299.99815 * 1 2 3 26 26 H 1.08994 * 109.47596 * 60.00009 * 1 2 3 27 27 H 1.09005 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47066 * 240.00362 * 2 1 3 29 29 H 1.08997 * 109.47402 * 120.00480 * 2 1 3 30 30 H 1.09004 * 109.46021 * 65.82006 * 4 3 2 31 31 H 1.09004 * 109.46050 * 305.85900 * 4 3 2 32 32 H 1.08997 * 109.50020 * 180.88055 * 5 4 3 33 33 H 1.09000 * 109.50114 * 60.76397 * 5 4 3 34 34 H 1.08998 * 109.52212 * 297.68443 * 6 5 4 35 35 H 0.97005 * 120.00371 * 335.12933 * 7 6 5 36 36 H 1.09005 * 109.46789 * 60.00435 * 10 8 7 37 37 H 1.09001 * 109.47726 * 300.00225 * 10 8 7 38 38 H 1.00896 * 111.00123 * 56.05205 * 11 10 8 39 39 H 1.09002 * 109.47153 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.46832 * 60.00356 * 14 12 11 41 41 H 1.09004 * 109.47261 * 300.00337 * 14 12 11 42 42 H 0.97001 * 119.99839 * 180.02562 * 18 17 15 43 43 H 1.08998 * 109.50468 * 62.31067 * 23 6 5 44 44 H 1.08992 * 109.50569 * 182.43128 * 23 6 5 45 45 H 1.08999 * 109.46733 * 294.17155 * 24 3 2 46 46 H 1.09006 * 109.46644 * 54.15288 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4679 1.4311 0.2380 5 6 3.9174 2.8875 0.3761 6 6 3.5675 3.6482 -0.9058 7 7 3.9427 5.0565 -0.7572 8 6 4.2079 5.8021 -1.8482 9 8 4.1354 5.3072 -2.9531 10 6 4.5932 7.2509 -1.6953 11 7 4.8280 7.8377 -3.0214 12 6 5.2073 9.2527 -2.9114 13 1 4.6724 9.7083 -2.0781 14 6 6.7142 9.3595 -2.6698 15 6 4.8512 9.9689 -4.1885 16 1 4.3897 9.4272 -5.0009 17 6 5.1145 11.3160 -4.3199 18 7 5.6760 11.9757 -3.3305 19 14 4.6738 12.2037 -5.9034 20 1 3.2915 12.7370 -5.8036 21 1 5.6223 13.3250 -6.1227 22 1 4.7572 11.2547 -7.0425 23 6 2.0609 3.5440 -1.1583 24 6 1.6650 2.0685 -1.2503 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9887 0.9682 -0.6003 31 1 3.7028 0.8900 1.1546 32 1 4.9949 2.9220 0.5372 33 1 3.4074 3.3470 1.2228 34 1 4.1087 3.2139 -1.7464 35 1 4.0003 5.4525 0.1265 36 1 5.5029 7.3239 -1.0991 37 1 3.7879 7.7906 -1.1970 38 1 4.0200 7.7248 -3.6150 39 1 6.9955 10.4094 -2.5877 40 1 7.2490 8.9038 -3.5031 41 1 6.9718 8.8414 -1.7459 42 1 5.8609 12.9235 -3.4228 43 1 1.5208 4.0141 -0.3365 44 1 1.8128 4.0474 -2.0927 45 1 2.1942 1.6027 -2.0817 46 1 0.5902 1.9906 -1.4147 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602865208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -64.227006 kcal Electronic energy + Delta-G solvation = -22494.108709 eV Core-core repulsion = 19224.063591 eV Total energy + Delta-G solvation = -3270.045118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.09834 -39.70721 -37.50033 -36.32174 -34.47916 -33.50100 -31.93938 -31.11170 -30.03020 -27.56677 -26.75266 -24.84836 -24.16766 -22.35063 -21.79440 -21.42972 -20.84664 -18.88177 -17.75789 -17.59017 -16.87271 -16.60999 -16.49433 -16.15063 -15.54042 -15.37624 -15.30192 -14.89273 -14.59374 -14.36963 -14.28800 -14.25951 -13.48260 -13.37320 -13.11450 -12.84368 -12.82376 -12.70491 -12.62171 -12.36539 -12.29287 -12.20065 -12.18522 -12.01611 -12.00860 -11.58873 -11.47866 -10.96642 -10.73553 -10.56090 -10.03786 -9.31563 -9.08174 -8.14762 -6.27935 1.41332 1.42828 1.53818 1.67065 2.12939 2.42360 2.90648 3.13801 3.65669 3.70602 3.81042 3.93798 4.07031 4.10901 4.25908 4.33987 4.43275 4.44875 4.48614 4.49440 4.62571 4.64626 4.65779 4.83764 4.85263 4.92470 4.94178 5.07589 5.08663 5.11617 5.15668 5.18693 5.25436 5.38799 5.44558 5.55441 5.65178 5.83822 6.08912 6.14232 6.21470 6.41201 6.54348 6.76669 6.93709 7.32339 7.41971 8.90873 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.038844 B = 0.002656 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.660585 B =10541.213075 C =10992.898147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 N -0.544 5.544 4 C 0.058 3.942 5 C -0.113 4.113 6 C 0.145 3.855 7 N -0.714 5.714 8 C 0.518 3.482 9 O -0.570 6.570 10 C 0.043 3.957 11 N -0.682 5.682 12 C 0.217 3.783 13 H -0.018 1.018 14 C -0.115 4.115 15 C -0.541 4.541 16 H 0.052 0.948 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.961 3.039 20 H -0.274 1.274 21 H -0.280 1.280 22 H -0.273 1.273 23 C -0.121 4.121 24 C 0.061 3.939 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.087 0.913 30 H 0.029 0.971 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.057 0.943 35 H 0.415 0.585 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.334 0.666 39 H 0.061 0.939 40 H 0.022 0.978 41 H 0.029 0.971 42 H 0.264 0.736 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.024 0.976 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.567 -22.269 12.678 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.070 4.070 5 C -0.151 4.151 6 C 0.040 3.960 7 N -0.367 5.367 8 C 0.305 3.695 9 O -0.448 6.448 10 C -0.090 4.090 11 N -0.314 5.314 12 C 0.109 3.891 13 H 0.000 1.000 14 C -0.173 4.173 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.787 3.213 20 H -0.199 1.199 21 H -0.205 1.205 22 H -0.198 1.198 23 C -0.160 4.160 24 C -0.067 4.067 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.047 0.953 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.075 0.925 35 H 0.252 0.748 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.041 0.959 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.042 0.958 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.118 -22.419 12.293 26.541 hybrid contribution -0.492 0.940 -1.086 1.518 sum -7.610 -21.479 11.208 25.394 Atomic orbital electron populations 1.21793 0.94356 1.02237 1.02107 1.22135 0.96616 0.87929 1.01220 1.62035 1.14102 1.16367 1.34397 1.22080 0.87031 0.96247 1.01632 1.21811 1.02194 0.94892 0.96214 1.20999 0.94922 0.80859 0.99196 1.45913 1.70185 1.11322 1.09257 1.20842 0.75490 0.88764 0.84378 1.90657 1.52900 1.73964 1.27320 1.21875 1.02232 0.90988 0.93859 1.60383 1.42002 1.18372 1.10605 1.18973 0.93104 0.82332 0.94701 1.00018 1.21567 0.97450 1.01025 0.97261 1.21549 1.40670 0.94466 1.01274 0.92960 1.25675 0.94802 0.98073 0.99782 1.69993 1.43072 1.09284 1.32917 0.85507 0.78125 0.77982 0.79705 1.19919 1.20488 1.19829 1.21892 0.95811 0.96552 1.01725 1.22013 1.01354 0.93250 0.90127 0.92120 0.93210 0.91062 0.95191 0.89485 0.95272 0.88311 0.89729 0.89254 0.92477 0.74789 0.87584 0.91874 0.84890 0.92056 0.95860 0.95184 0.92671 0.90296 0.93416 0.95772 0.89588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.84 71.98 0.71 -0.94 16 2 C 0.05 0.60 5.68 86.30 0.49 1.09 16 3 N -0.54 -8.36 4.66 -896.34 -4.18 -12.53 16 4 C 0.06 0.80 5.46 86.33 0.47 1.27 16 5 C -0.11 -1.63 5.57 30.65 0.17 -1.46 16 6 C 0.14 3.11 2.52 45.07 0.11 3.23 16 7 N -0.71 -16.40 5.08 -442.15 -2.25 -18.64 16 8 C 0.52 17.09 7.83 87.66 0.69 17.78 16 9 O -0.57 -23.90 15.87 -3.04 -0.05 -23.94 16 10 C 0.04 1.50 5.96 85.56 0.51 2.01 16 11 N -0.68 -31.10 5.93 -499.47 -2.96 -34.06 16 12 C 0.22 11.24 2.60 44.17 0.11 11.35 16 13 H -0.02 -0.97 7.80 -2.39 -0.02 -0.99 16 14 C -0.11 -5.75 9.19 71.98 0.66 -5.09 16 15 C -0.54 -30.71 8.59 25.60 0.22 -30.49 16 16 H 0.05 2.99 7.62 -2.91 -0.02 2.97 16 17 C 0.02 0.91 5.30 84.66 0.45 1.36 16 18 N -0.91 -52.41 11.32 21.45 0.24 -52.17 16 19 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 23 C -0.12 -2.58 5.68 30.65 0.17 -2.41 16 24 C 0.06 1.12 5.29 86.33 0.46 1.57 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.05 0.62 6.43 -2.39 -0.02 0.60 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.03 0.39 8.12 -2.38 -0.02 0.37 16 29 H 0.09 0.86 7.99 -2.39 -0.02 0.84 16 30 H 0.03 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.10 1.00 8.02 -2.39 -0.02 0.98 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.56 7.58 -2.39 -0.02 1.54 16 35 H 0.42 6.82 8.60 -92.70 -0.80 6.02 16 36 H 0.11 3.39 7.44 -2.38 -0.02 3.38 16 37 H 0.06 2.04 8.06 -2.39 -0.02 2.02 16 38 H 0.33 15.86 7.92 -89.70 -0.71 15.15 16 39 H 0.06 3.33 6.07 -2.39 -0.01 3.32 16 40 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.03 1.29 7.45 -2.38 -0.02 1.28 16 42 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 43 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.02 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.09 1.46 6.21 -2.38 -0.01 1.44 16 Total: -1.00 -67.57 360.13 -2.48 -70.05 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.55 Total: 25.68 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 5.23 Total: -0.72 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -9.14 Total: -117.40 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.05 Total: -23.94 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -67.57 -2.48 -70.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602865208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.824 kcal (2) G-P(sol) polarization free energy of solvation -67.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds