Wall clock time and date at job start Wed Apr 15 2020 11:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47329 * 2 1 4 4 C 1.50703 * 109.46943 * 240.00370 * 2 1 3 5 5 O 1.21286 * 119.99907 * 250.49265 * 4 2 1 6 6 N 1.34776 * 119.99972 * 70.48949 * 4 2 1 7 7 C 1.46504 * 120.00063 * 179.97438 * 6 4 2 8 8 C 1.52999 * 109.47359 * 180.02562 * 7 6 4 9 9 H 1.09007 * 109.52250 * 304.92638 * 8 7 6 10 10 C 1.53348 * 109.68600 * 184.75440 * 8 7 6 11 11 C 1.53034 * 109.60631 * 178.74606 * 10 8 7 12 12 C 1.53191 * 109.31215 * 61.37618 * 11 10 8 13 13 N 1.46923 * 108.77392 * 305.36028 * 12 11 10 14 14 C 1.36934 * 120.63292 * 233.62765 * 13 12 11 15 15 H 1.08002 * 120.00205 * 147.60506 * 14 13 12 16 16 C 1.38819 * 120.00192 * 327.60956 * 14 13 12 17 17 N 1.31620 * 120.00084 * 162.24629 * 16 14 13 18 18 Si 1.86798 * 119.99647 * 342.23962 * 16 14 13 19 19 H 1.48499 * 109.47197 * 89.70447 * 18 16 14 20 20 H 1.48502 * 109.47240 * 209.70510 * 18 16 14 21 21 H 1.48501 * 109.47488 * 329.70439 * 18 16 14 22 22 C 1.46921 * 118.73860 * 53.61466 * 13 12 11 23 23 N 1.46903 * 109.47383 * 120.00347 * 2 1 3 24 24 C 1.46895 * 110.99671 * 287.01964 * 23 2 1 25 25 C 1.46900 * 110.99762 * 50.97518 * 23 2 1 26 26 H 1.09004 * 109.46915 * 299.99267 * 1 2 3 27 27 H 1.09001 * 109.47750 * 59.99480 * 1 2 3 28 28 H 1.09002 * 109.47057 * 179.97438 * 1 2 3 29 29 H 0.97001 * 120.00144 * 0.02562 * 6 4 2 30 30 H 1.09001 * 109.46936 * 60.00479 * 7 6 4 31 31 H 1.09002 * 109.47032 * 300.00559 * 7 6 4 32 32 H 1.08994 * 109.41561 * 58.71014 * 10 8 7 33 33 H 1.08998 * 109.41943 * 298.78755 * 10 8 7 34 34 H 1.08999 * 109.50195 * 301.42150 * 11 10 8 35 35 H 1.09001 * 109.49878 * 181.32587 * 11 10 8 36 36 H 1.09009 * 109.58653 * 185.57437 * 12 11 10 37 37 H 1.08997 * 109.70600 * 65.22335 * 12 11 10 38 38 H 0.96996 * 119.99974 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.59035 * 66.17179 * 22 13 12 40 40 H 1.08997 * 109.58815 * 186.45965 * 22 13 12 41 41 H 1.08997 * 109.47392 * 57.77072 * 24 23 2 42 42 H 1.09004 * 109.46515 * 177.76267 * 24 23 2 43 43 H 1.08994 * 109.47657 * 297.76247 * 24 23 2 44 44 H 1.08996 * 109.47628 * 59.99785 * 25 23 2 45 45 H 1.08996 * 109.47128 * 180.02562 * 25 23 2 46 46 H 1.09010 * 109.46842 * 299.99847 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.5651 -1.7952 -1.1295 6 7 1.8893 -0.1401 -2.4433 7 6 2.3781 -0.8304 -3.6396 8 6 2.0944 0.0267 -4.8748 9 1 1.0316 0.2652 -4.9163 10 6 2.4958 -0.7415 -6.1398 11 6 2.1823 0.1049 -7.3757 12 6 2.9951 1.4022 -7.3207 13 7 2.7245 2.0760 -6.0435 14 6 2.3100 3.3809 -6.0171 15 1 1.6418 3.7197 -5.2392 16 6 2.7488 4.2684 -6.9903 17 7 2.1062 5.4002 -7.1866 18 14 4.2511 3.8562 -8.0210 19 1 3.8297 3.1112 -9.2345 20 1 4.9349 5.1115 -8.4234 21 1 5.1832 3.0183 -7.2246 22 6 2.9066 1.3231 -4.7951 23 7 2.0197 -0.6926 1.1994 24 6 1.8167 0.1280 2.4008 25 6 1.3810 -2.0074 1.3457 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.4635 0.7277 -2.5241 30 1 1.8704 -1.7899 -3.7383 31 1 3.4520 -0.9950 -3.5508 32 1 1.9373 -1.6762 -6.1887 33 1 3.5637 -0.9576 -6.1090 34 1 1.1187 0.3424 -7.3938 35 1 2.4465 -0.4521 -8.2747 36 1 2.7027 2.0519 -8.1458 37 1 4.0582 1.1733 -7.3951 38 1 2.4130 6.0204 -7.8663 39 1 3.9620 1.0854 -4.6623 40 1 2.5581 1.9215 -3.9533 41 1 0.7581 0.3663 2.5034 42 1 2.1515 -0.4244 3.2788 43 1 2.3899 1.0507 2.3117 44 1 1.6056 -2.6197 0.4724 45 1 1.7612 -2.4983 2.2415 46 1 0.3019 -1.8795 1.4320 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602897327.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:59 Heat of formation + Delta-G solvation = -11.237654 kcal Electronic energy + Delta-G solvation = -23349.113721 eV Core-core repulsion = 20081.366393 eV Total energy + Delta-G solvation = -3267.747327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.17513 -38.29242 -37.11893 -34.88494 -33.08040 -31.52604 -30.86411 -30.22032 -27.72203 -26.31183 -25.43818 -25.12439 -22.39670 -21.88695 -21.17153 -19.97854 -19.24466 -17.17322 -16.73995 -16.43872 -15.55298 -15.38295 -15.19373 -14.77423 -14.53937 -14.24012 -13.93236 -13.74087 -13.42969 -13.20745 -12.89613 -12.66577 -12.56382 -12.45200 -12.22359 -12.03581 -11.95744 -11.68150 -11.56958 -11.47317 -11.45333 -10.81145 -10.60495 -10.54185 -10.16014 -9.95697 -9.65657 -9.60660 -9.50484 -8.93547 -8.62266 -8.44460 -6.93231 -5.99020 -3.40018 2.70181 3.10560 3.30537 3.46394 3.50390 3.88910 4.50635 4.62536 4.72812 4.82613 4.88369 5.07208 5.09664 5.15908 5.23002 5.27261 5.33348 5.35501 5.40415 5.41087 5.55037 5.61962 5.65751 5.78428 5.81797 5.84060 5.99581 6.02804 6.10268 6.13216 6.29285 6.37270 6.49927 6.56417 6.58707 6.69500 6.71308 6.74429 6.85307 6.95487 7.60497 7.97282 8.30270 8.32382 8.91217 9.68198 10.08660 11.16985 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.024175 B = 0.003786 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.941467 B = 7394.724246 C = 8063.818078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.061 3.939 3 H 0.107 0.893 4 C 0.520 3.480 5 O -0.531 6.531 6 N -0.725 5.725 7 C 0.130 3.870 8 C -0.119 4.119 9 H 0.077 0.923 10 C -0.101 4.101 11 C -0.133 4.133 12 C 0.124 3.876 13 N -0.606 5.606 14 C -0.263 4.263 15 H 0.082 0.918 16 C 0.028 3.972 17 N -0.910 5.910 18 Si 0.886 3.114 19 H -0.287 1.287 20 H -0.303 1.303 21 H -0.271 1.271 22 C 0.155 3.845 23 N -0.524 5.524 24 C 0.022 3.978 25 C 0.013 3.987 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.403 0.597 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.023 0.977 38 H 0.263 0.737 39 H 0.023 0.977 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.244 -12.369 12.956 18.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.051 4.051 3 H 0.125 0.875 4 C 0.306 3.694 5 O -0.407 6.407 6 N -0.377 5.377 7 C 0.006 3.994 8 C -0.140 4.140 9 H 0.095 0.905 10 C -0.139 4.139 11 C -0.173 4.173 12 C -0.001 4.001 13 N -0.329 5.329 14 C -0.392 4.392 15 H 0.100 0.900 16 C -0.172 4.172 17 N -0.552 5.552 18 Si 0.717 3.283 19 H -0.214 1.214 20 H -0.231 1.231 21 H -0.196 1.196 22 C 0.029 3.971 23 N -0.248 5.248 24 C -0.126 4.126 25 C -0.135 4.135 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.238 0.762 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.082 0.918 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.342 -13.049 12.892 18.492 hybrid contribution -0.254 0.534 -0.621 0.857 sum -2.597 -12.514 12.271 17.718 Atomic orbital electron populations 1.22383 0.95119 1.03258 1.03445 1.21659 0.94359 0.99036 0.90091 0.87526 1.20345 0.78888 0.86021 0.84189 1.90626 1.42855 1.21110 1.86125 1.46060 1.61651 1.23652 1.06343 1.21393 0.99531 0.95227 0.83280 1.21993 1.01896 0.97133 0.92948 0.90475 1.21392 1.00807 0.97360 0.94319 1.21984 1.01472 0.97409 0.96400 1.21363 0.96014 0.92894 0.89875 1.44306 1.79293 1.10013 0.99315 1.18865 1.22796 0.83327 1.14165 0.89997 1.25386 0.98018 0.95118 0.98667 1.69806 1.39734 1.11186 1.34483 0.86886 0.85114 0.76261 0.80085 1.21425 1.23112 1.19626 1.20944 0.95916 0.90533 0.89694 1.61875 1.57812 1.03629 1.01452 1.22454 0.99578 0.98151 0.92442 1.22657 0.95983 0.90907 1.03948 0.91383 0.90980 0.91465 0.76229 0.91975 0.91581 0.92836 0.92338 0.91764 0.92722 0.91066 0.95893 0.92712 0.95869 0.92213 0.95344 0.91145 0.91194 0.88980 0.91796 0.95651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.37 37.16 0.31 -1.28 16 2 C 0.06 0.65 2.71 -68.86 -0.19 0.46 16 3 H 0.11 1.02 8.03 -51.93 -0.42 0.61 16 4 C 0.52 6.97 6.96 -10.98 -0.08 6.90 16 5 O -0.53 -8.87 14.15 5.55 0.08 -8.79 16 6 N -0.72 -9.06 5.33 -60.29 -0.32 -9.38 16 7 C 0.13 1.75 5.08 -4.04 -0.02 1.73 16 8 C -0.12 -1.79 2.39 -90.34 -0.22 -2.01 16 9 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 10 C -0.10 -1.48 5.19 -26.53 -0.14 -1.62 16 11 C -0.13 -2.26 6.08 -26.62 -0.16 -2.42 16 12 C 0.12 2.64 4.21 -3.71 -0.02 2.62 16 13 N -0.61 -13.90 2.70 -172.32 -0.47 -14.36 16 14 C -0.26 -7.14 10.00 -15.06 -0.15 -7.30 16 15 H 0.08 2.35 8.06 -52.49 -0.42 1.93 16 16 C 0.03 0.78 5.25 -17.43 -0.09 0.69 16 17 N -0.91 -27.44 13.97 55.49 0.78 -26.66 16 18 Si 0.89 22.27 24.37 -169.99 -4.14 18.12 16 19 H -0.29 -6.93 6.58 56.52 0.37 -6.56 16 20 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 21 H -0.27 -6.76 6.80 56.52 0.38 -6.37 16 22 C 0.16 2.89 5.59 -3.71 -0.02 2.87 16 23 N -0.52 -5.87 4.73 -244.59 -1.16 -7.02 16 24 C 0.02 0.18 9.42 60.06 0.57 0.75 16 25 C 0.01 0.14 8.60 60.06 0.52 0.65 16 26 H 0.07 0.51 6.77 -51.93 -0.35 0.16 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.62 6.32 -51.93 -0.33 0.29 16 29 H 0.40 4.52 7.69 -40.82 -0.31 4.20 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.07 1.67 4.90 -51.92 -0.25 1.41 16 37 H 0.02 0.49 7.07 -51.93 -0.37 0.12 16 38 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 41 H 0.03 0.21 6.67 -51.93 -0.35 -0.14 16 42 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 44 H 0.09 1.19 5.79 -51.93 -0.30 0.89 16 45 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 46 H 0.03 0.23 6.20 -51.92 -0.32 -0.09 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.95 346.12 -7.74 -39.69 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.04 Total: 1.15 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 0.32 Total: 2.04 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: -1.17 Total: -57.43 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.08 Total: -8.79 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.95 -7.74 -39.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602897327.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.452 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds