Wall clock time and date at job start Wed Apr 15 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99756 * 2 1 4 4 C 1.46891 * 110.99968 * 123.95635 * 2 1 3 5 5 C 1.53008 * 109.47453 * 66.04561 * 4 2 1 6 6 C 1.52992 * 109.47366 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46981 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00240 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.48216 * 119.96950 * 180.02562 * 9 7 6 11 11 C 1.47139 * 110.33900 * 102.47479 * 10 9 7 12 12 C 1.53800 * 111.84388 * 58.29922 * 11 10 9 13 13 N 1.43463 * 107.95594 * 281.66239 * 12 11 10 14 14 C 1.36935 * 118.94418 * 273.61114 * 13 12 11 15 15 H 1.08002 * 119.99775 * 27.13389 * 14 13 12 16 16 C 1.38811 * 120.00114 * 207.14382 * 14 13 12 17 17 N 1.31615 * 120.00227 * 26.49459 * 16 14 13 18 18 Si 1.86806 * 119.99744 * 206.50038 * 16 14 13 19 19 H 1.48495 * 109.47040 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47035 * 59.99654 * 18 16 14 21 21 H 1.48493 * 109.47219 * 299.99924 * 18 16 14 22 22 C 1.48860 * 122.11873 * 93.88979 * 13 12 11 23 23 C 1.43623 * 119.97019 * 359.97438 * 9 7 6 24 24 H 1.08996 * 109.46683 * 296.04521 * 1 2 3 25 25 H 1.08999 * 109.47325 * 56.04303 * 1 2 3 26 26 H 1.09000 * 109.47047 * 176.04464 * 1 2 3 27 27 H 1.09004 * 109.46721 * 183.95908 * 3 2 1 28 28 H 1.08997 * 109.47226 * 303.95565 * 3 2 1 29 29 H 1.08996 * 109.47277 * 63.96316 * 3 2 1 30 30 H 1.08996 * 109.47402 * 306.04170 * 4 2 1 31 31 H 1.09006 * 109.47015 * 186.04181 * 4 2 1 32 32 H 1.09001 * 109.46500 * 59.99740 * 5 4 2 33 33 H 1.08998 * 109.46865 * 300.00088 * 5 4 2 34 34 H 1.09004 * 109.46867 * 60.00158 * 6 5 4 35 35 H 1.08998 * 109.47618 * 300.00138 * 6 5 4 36 36 H 1.08998 * 109.32711 * 342.20666 * 10 9 7 37 37 H 1.09003 * 109.17959 * 222.64946 * 10 9 7 38 38 H 1.09001 * 109.00884 * 297.68394 * 11 10 9 39 39 H 1.09005 * 108.94169 * 178.85941 * 11 10 9 40 40 H 1.08997 * 109.76249 * 162.04703 * 12 11 10 41 41 H 1.09000 * 109.80883 * 41.30044 * 12 11 10 42 42 H 0.96998 * 119.99990 * 5.79357 * 17 16 14 43 43 H 1.09002 * 109.48060 * 80.34523 * 22 13 12 44 44 H 1.08998 * 109.48404 * 200.37951 * 22 13 12 45 45 H 1.08999 * 108.87197 * 31.46418 * 23 9 7 46 46 H 1.09000 * 108.87340 * 149.99854 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1803 -3.0406 2.1547 7 6 1.8212 -4.4949 1.9902 8 8 1.1891 -4.8575 1.0208 9 7 2.2035 -5.3927 2.9198 10 6 1.8505 -6.8230 2.7571 11 6 3.0160 -7.5869 2.2847 12 6 4.2075 -7.4680 3.2499 13 7 4.8338 -6.1971 3.0249 14 6 5.7865 -6.0916 2.0469 15 1 5.7646 -6.7584 1.1976 16 6 6.7804 -5.1278 2.1472 17 7 7.1483 -4.6824 3.3298 18 14 7.5957 -4.4628 0.6036 19 1 8.6161 -3.4514 0.9792 20 1 6.5701 -3.8316 -0.2652 21 1 8.2486 -5.5764 -0.1304 22 6 4.4858 -4.9906 3.8244 23 6 2.9536 -4.9628 4.0667 24 1 -0.3632 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0710 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.5612 -0.3873 2.0627 31 1 3.0798 -0.6611 1.1755 32 1 2.0658 -2.6213 0.0450 33 1 0.5472 -2.3476 0.9322 34 1 1.7463 -2.6620 3.0801 35 1 3.2646 -2.9357 2.1923 36 1 1.0413 -6.9146 2.0326 37 1 1.5223 -7.2223 3.7168 38 1 3.3133 -7.2115 1.3055 39 1 2.7372 -8.6366 2.1925 40 1 4.9202 -8.2696 3.0560 41 1 3.8560 -7.5285 4.2799 42 1 6.7865 -5.0861 4.1341 43 1 5.0079 -5.0252 4.7807 44 1 4.7839 -4.0949 3.2796 45 1 2.6557 -3.9458 4.3218 46 1 2.7216 -5.6187 4.9058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196970759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:45 Heat of formation + Delta-G solvation = -9.309146 kcal Electronic energy + Delta-G solvation = -24008.793069 eV Core-core repulsion = 20741.129369 eV Total energy + Delta-G solvation = -3267.663701 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.83237 -37.77080 -37.01839 -34.41080 -33.45999 -32.41997 -30.77535 -27.97486 -27.65431 -27.13513 -25.25089 -23.70017 -23.38944 -21.62793 -20.59642 -19.76729 -18.40310 -17.42117 -16.55213 -16.06473 -15.82633 -15.35866 -14.99283 -14.69553 -14.25130 -14.23595 -13.80395 -13.52783 -13.28439 -12.95596 -12.67262 -12.49201 -12.32910 -12.22519 -12.09767 -11.80526 -11.58337 -11.34803 -11.28227 -11.09536 -11.02917 -10.69494 -10.49657 -10.29938 -10.27239 -10.23999 -9.99417 -9.38031 -9.28236 -8.41105 -8.32100 -8.11052 -6.89039 -6.06820 -3.23996 3.10109 3.48571 3.50716 3.55299 3.71628 3.94268 4.60232 4.84906 5.03124 5.08891 5.12845 5.17651 5.28798 5.31050 5.42990 5.43742 5.50331 5.54407 5.58035 5.65656 5.69945 5.74017 5.77841 5.85399 5.88148 5.90483 5.96614 6.01585 6.18670 6.33101 6.37081 6.46052 6.50946 6.68097 6.76412 6.92698 6.96805 6.97730 6.99592 7.20066 7.93193 8.06516 8.56886 8.67566 9.15087 9.84114 10.23438 11.19282 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.005992 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.347988 B = 4671.979895 C = 6057.750301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.054 3.946 5 C -0.097 4.097 6 C -0.139 4.139 7 C 0.522 3.478 8 O -0.556 6.556 9 N -0.587 5.587 10 C 0.130 3.870 11 C -0.168 4.168 12 C 0.165 3.835 13 N -0.594 5.594 14 C -0.351 4.351 15 H 0.053 0.947 16 C -0.018 4.018 17 N -0.915 5.915 18 Si 1.053 2.947 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.293 1.293 22 C 0.137 3.863 23 C 0.089 3.911 24 H 0.022 0.978 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.023 0.977 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.046 0.954 41 H 0.030 0.970 42 H 0.267 0.733 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 6.285 1.007 13.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.311 3.689 8 O -0.435 6.435 9 N -0.319 5.319 10 C 0.008 3.992 11 C -0.209 4.209 12 C 0.036 3.964 13 N -0.316 5.316 14 C -0.480 4.480 15 H 0.071 0.929 16 C -0.220 4.220 17 N -0.555 5.555 18 Si 0.883 3.117 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.220 1.220 22 C 0.011 3.989 23 C -0.037 4.037 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.087 0.913 45 H 0.087 0.913 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.080 6.975 -0.478 13.101 hybrid contribution -1.187 -0.821 1.359 1.982 sum -12.266 6.155 0.881 13.752 Atomic orbital electron populations 1.22444 0.87581 1.02652 1.00013 1.61926 1.07938 1.13605 1.43667 1.22380 1.01033 0.88809 1.00147 1.22198 1.00548 0.93901 0.90730 1.21294 1.01309 0.92433 0.98525 1.21653 1.03961 0.92297 1.00052 1.20491 0.78436 0.88084 0.81871 1.90620 1.41581 1.81243 1.30017 1.47374 1.53438 1.07769 1.23284 1.20536 0.97919 0.80045 1.00673 1.21833 0.97809 0.98160 1.03130 1.20280 0.92609 0.88925 0.94545 1.43675 1.43990 1.02772 1.41206 1.19914 1.06075 1.21907 1.00129 0.92905 1.25701 0.94835 0.98934 1.02570 1.70826 1.41048 1.45806 0.97849 0.83694 0.76163 0.76597 0.75238 1.21109 1.21903 1.21987 1.22167 0.89622 0.91578 0.95540 1.21985 0.94753 0.99448 0.87551 0.95903 0.91671 0.90803 0.91173 0.91544 0.95868 0.94949 0.90335 0.90263 0.91590 0.89718 0.88168 0.90452 0.92326 0.91211 0.92710 0.93530 0.95138 0.92159 0.94762 0.91252 0.91317 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.07 0.56 0.79 16 2 N -0.55 -6.85 5.02 -251.26 -1.26 -8.11 16 3 C 0.02 0.25 9.57 60.06 0.57 0.83 16 4 C 0.05 0.69 4.96 -3.82 -0.02 0.67 16 5 C -0.10 -1.45 4.43 -26.73 -0.12 -1.56 16 6 C -0.14 -2.15 4.25 -27.89 -0.12 -2.27 16 7 C 0.52 9.80 7.67 -10.99 -0.08 9.72 16 8 O -0.56 -11.99 15.42 5.56 0.09 -11.91 16 9 N -0.59 -10.48 2.46 -176.48 -0.43 -10.92 16 10 C 0.13 2.20 5.70 -5.91 -0.03 2.16 16 11 C -0.17 -3.12 5.64 -29.13 -0.16 -3.28 16 12 C 0.16 3.35 5.63 -5.23 -0.03 3.32 16 13 N -0.59 -14.11 2.38 -171.82 -0.41 -14.52 16 14 C -0.35 -9.60 9.12 -15.06 -0.14 -9.73 16 15 H 0.05 1.51 7.96 -52.49 -0.42 1.09 16 16 C -0.02 -0.50 4.60 -17.43 -0.08 -0.58 16 17 N -0.92 -26.36 12.63 55.49 0.70 -25.66 16 18 Si 1.05 25.34 29.99 -169.99 -5.10 20.24 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.14 2.92 5.09 -1.60 -0.01 2.91 16 23 C 0.09 1.47 5.05 -4.43 -0.02 1.45 16 24 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 26 H 0.07 0.84 6.47 -51.93 -0.34 0.50 16 27 H 0.07 0.72 8.12 -51.93 -0.42 0.29 16 28 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 29 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 31 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 32 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 34 H 0.08 1.08 7.37 -51.93 -0.38 0.69 16 35 H 0.10 1.69 7.34 -51.93 -0.38 1.31 16 36 H 0.08 1.35 7.13 -51.93 -0.37 0.98 16 37 H 0.06 0.84 8.05 -51.93 -0.42 0.43 16 38 H 0.07 1.55 7.91 -51.93 -0.41 1.14 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.99 8.02 -51.93 -0.42 0.57 16 41 H 0.03 0.56 7.59 -51.93 -0.39 0.17 16 42 H 0.27 7.68 6.37 -40.82 -0.26 7.42 16 43 H 0.03 0.76 7.11 -51.93 -0.37 0.39 16 44 H 0.07 1.64 6.22 -51.93 -0.32 1.32 16 45 H 0.07 0.97 6.38 -51.93 -0.33 0.63 16 46 H 0.06 0.94 7.72 -51.93 -0.40 0.54 16 LS Contribution 351.46 15.07 5.30 5.30 Total: -1.00 -31.64 351.46 -8.94 -40.58 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.14 Total: 0.58 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 0.32 Total: 4.42 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -1.40 Total: -59.20 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.10 Total: 20.24 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.64 -8.94 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196970759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.267 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds