Wall clock time and date at job start Wed Apr 15 2020 11:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 110.99756 * 2 1 4 4 C 1.46891 * 110.99968 * 123.95635 * 2 1 3 5 5 C 1.53008 * 109.47453 * 66.04561 * 4 2 1 6 6 C 1.52992 * 109.47366 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.46981 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00240 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99993 * 179.97438 * 7 6 5 10 10 C 1.48216 * 119.96950 * 180.02562 * 9 7 6 11 11 C 1.47139 * 110.33900 * 102.47479 * 10 9 7 12 12 C 1.53800 * 111.84388 * 58.29922 * 11 10 9 13 13 N 1.43463 * 107.95594 * 281.66239 * 12 11 10 14 14 C 1.36935 * 118.94418 * 273.61114 * 13 12 11 15 15 H 1.08002 * 119.99775 * 27.13389 * 14 13 12 16 16 C 1.38811 * 120.00114 * 207.14382 * 14 13 12 17 17 N 1.31615 * 120.00227 * 26.49459 * 16 14 13 18 18 Si 1.86806 * 119.99744 * 206.50038 * 16 14 13 19 19 H 1.48495 * 109.47040 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47035 * 59.99654 * 18 16 14 21 21 H 1.48493 * 109.47219 * 299.99924 * 18 16 14 22 22 C 1.48860 * 122.11873 * 93.88979 * 13 12 11 23 23 C 1.43623 * 119.97019 * 359.97438 * 9 7 6 24 24 H 1.08996 * 109.46683 * 296.04521 * 1 2 3 25 25 H 1.08999 * 109.47325 * 56.04303 * 1 2 3 26 26 H 1.09000 * 109.47047 * 176.04464 * 1 2 3 27 27 H 1.09004 * 109.46721 * 183.95908 * 3 2 1 28 28 H 1.08997 * 109.47226 * 303.95565 * 3 2 1 29 29 H 1.08996 * 109.47277 * 63.96316 * 3 2 1 30 30 H 1.08996 * 109.47402 * 306.04170 * 4 2 1 31 31 H 1.09006 * 109.47015 * 186.04181 * 4 2 1 32 32 H 1.09001 * 109.46500 * 59.99740 * 5 4 2 33 33 H 1.08998 * 109.46865 * 300.00088 * 5 4 2 34 34 H 1.09004 * 109.46867 * 60.00158 * 6 5 4 35 35 H 1.08998 * 109.47618 * 300.00138 * 6 5 4 36 36 H 1.08998 * 109.32711 * 342.20666 * 10 9 7 37 37 H 1.09003 * 109.17959 * 222.64946 * 10 9 7 38 38 H 1.09001 * 109.00884 * 297.68394 * 11 10 9 39 39 H 1.09005 * 108.94169 * 178.85941 * 11 10 9 40 40 H 1.08997 * 109.76249 * 162.04703 * 12 11 10 41 41 H 1.09000 * 109.80883 * 41.30044 * 12 11 10 42 42 H 0.96998 * 119.99990 * 5.79357 * 17 16 14 43 43 H 1.09002 * 109.48060 * 80.34523 * 22 13 12 44 44 H 1.08998 * 109.48404 * 200.37951 * 22 13 12 45 45 H 1.08999 * 108.87197 * 31.46418 * 23 9 7 46 46 H 1.09000 * 108.87340 * 149.99854 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 6 2.1803 -3.0406 2.1547 7 6 1.8212 -4.4949 1.9902 8 8 1.1891 -4.8575 1.0208 9 7 2.2035 -5.3927 2.9198 10 6 1.8505 -6.8230 2.7571 11 6 3.0160 -7.5869 2.2847 12 6 4.2075 -7.4680 3.2499 13 7 4.8338 -6.1971 3.0249 14 6 5.7865 -6.0916 2.0469 15 1 5.7646 -6.7584 1.1976 16 6 6.7804 -5.1278 2.1472 17 7 7.1483 -4.6824 3.3298 18 14 7.5957 -4.4628 0.6036 19 1 8.6161 -3.4514 0.9792 20 1 6.5701 -3.8316 -0.2652 21 1 8.2486 -5.5764 -0.1304 22 6 4.4858 -4.9906 3.8244 23 6 2.9536 -4.9628 4.0667 24 1 -0.3632 0.4512 0.9233 25 1 -0.3634 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3432 -0.0710 28 1 1.5898 1.9163 -0.8524 29 1 1.7045 1.8723 0.9233 30 1 1.5612 -0.3873 2.0627 31 1 3.0798 -0.6611 1.1755 32 1 2.0658 -2.6213 0.0450 33 1 0.5472 -2.3476 0.9322 34 1 1.7463 -2.6620 3.0801 35 1 3.2646 -2.9357 2.1923 36 1 1.0413 -6.9146 2.0326 37 1 1.5223 -7.2223 3.7168 38 1 3.3133 -7.2115 1.3055 39 1 2.7372 -8.6366 2.1925 40 1 4.9202 -8.2696 3.0560 41 1 3.8560 -7.5285 4.2799 42 1 6.7865 -5.0861 4.1341 43 1 5.0079 -5.0252 4.7807 44 1 4.7839 -4.0949 3.2796 45 1 2.6557 -3.9458 4.3218 46 1 2.7216 -5.6187 4.9058 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196970759.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:44 Heat of formation + Delta-G solvation = -29.621068 kcal Electronic energy + Delta-G solvation = -24009.673860 eV Core-core repulsion = 20741.129369 eV Total energy + Delta-G solvation = -3268.544492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29007 -38.97564 -38.42195 -36.14012 -34.85240 -33.82889 -32.61745 -29.44797 -28.56960 -28.40721 -26.83828 -25.52210 -24.60292 -22.93450 -21.72376 -21.49140 -19.85347 -19.31117 -18.03888 -17.49846 -17.02606 -16.54917 -16.18587 -16.04811 -15.82757 -15.58649 -15.40854 -15.11920 -14.67521 -14.45882 -14.22501 -13.90692 -13.70488 -13.29469 -13.17914 -12.96990 -12.84903 -12.76534 -12.61591 -12.54471 -12.33340 -12.22996 -12.04566 -12.01364 -11.88880 -11.79160 -11.56831 -11.30078 -10.77290 -10.38659 -9.59906 -9.29826 -8.87136 -8.19562 -5.36079 1.53996 1.59267 1.63895 1.78578 2.15186 2.62636 3.01294 3.18571 3.53509 3.64770 3.94439 4.00681 4.06416 4.11820 4.19173 4.25185 4.30842 4.40152 4.47367 4.48464 4.50750 4.59172 4.65129 4.65578 4.73556 4.74382 4.76640 4.85109 4.97629 5.00726 5.01491 5.02738 5.15017 5.16545 5.22586 5.29456 5.41885 5.72768 5.88250 6.07041 6.12143 6.43266 6.52795 7.15575 7.23255 7.83881 8.20828 9.02087 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.013215 B = 0.005992 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.347988 B = 4671.979895 C = 6057.750301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.571 5.571 3 C 0.025 3.975 4 C 0.061 3.939 5 C -0.088 4.088 6 C -0.132 4.132 7 C 0.511 3.489 8 O -0.591 6.591 9 N -0.589 5.589 10 C 0.127 3.873 11 C -0.153 4.153 12 C 0.161 3.839 13 N -0.609 5.609 14 C -0.354 4.354 15 H 0.031 0.969 16 C -0.059 4.059 17 N -0.934 5.934 18 Si 1.093 2.907 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.141 3.859 23 C 0.098 3.902 24 H 0.034 0.966 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.022 0.978 39 H 0.083 0.917 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.259 0.741 43 H 0.027 0.973 44 H 0.038 0.962 45 H 0.101 0.899 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.550 6.982 2.264 15.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.296 5.296 3 C -0.123 4.123 4 C -0.067 4.067 5 C -0.126 4.126 6 C -0.172 4.172 7 C 0.302 3.698 8 O -0.472 6.472 9 N -0.320 5.320 10 C 0.005 3.995 11 C -0.194 4.194 12 C 0.034 3.966 13 N -0.333 5.333 14 C -0.485 4.485 15 H 0.049 0.951 16 C -0.257 4.257 17 N -0.576 5.576 18 Si 0.919 3.081 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.209 1.209 22 C 0.015 3.985 23 C -0.028 4.028 24 H 0.053 0.947 25 H 0.096 0.904 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.116 0.884 38 H 0.041 0.959 39 H 0.102 0.898 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.631 7.653 0.799 14.791 hybrid contribution -0.726 -1.118 0.952 1.638 sum -13.357 6.535 1.751 14.973 Atomic orbital electron populations 1.22447 0.86583 1.02320 1.01184 1.61899 1.09074 1.14895 1.43704 1.22409 1.00821 0.87797 1.01249 1.22077 1.00230 0.92541 0.91869 1.21172 1.00988 0.93779 0.96680 1.21641 1.03070 0.90487 1.01985 1.21109 0.77863 0.89480 0.81394 1.90599 1.43288 1.82025 1.31337 1.47538 1.52889 1.08146 1.23397 1.20648 0.96731 0.79548 1.02533 1.21645 0.97669 1.00131 0.99951 1.20414 0.92650 0.87018 0.96531 1.43894 1.43721 1.04838 1.40834 1.19984 1.06791 1.21423 1.00279 0.95146 1.26637 0.95598 0.99468 1.03994 1.70911 1.42192 1.46553 0.97940 0.83131 0.75566 0.76390 0.72974 1.21026 1.21717 1.20861 1.22099 0.93110 0.89274 0.93967 1.21929 0.90862 1.02273 0.87693 0.94732 0.90437 0.91914 0.91583 0.90322 0.94800 0.93049 0.91121 0.93798 0.91424 0.86025 0.89687 0.91048 0.88370 0.95934 0.89814 0.95179 0.92170 0.93078 0.95556 0.94367 0.88102 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.32 127.69 1.19 1.64 16 2 N -0.57 -13.61 5.02 -948.85 -4.76 -18.38 16 3 C 0.03 0.47 9.57 127.69 1.22 1.69 16 4 C 0.06 1.49 4.96 86.31 0.43 1.92 16 5 C -0.09 -2.58 4.43 30.59 0.14 -2.45 16 6 C -0.13 -3.92 4.25 29.84 0.13 -3.80 16 7 C 0.51 18.77 7.67 87.66 0.67 19.44 16 8 O -0.59 -25.64 15.42 -3.02 -0.05 -25.69 16 9 N -0.59 -19.85 2.46 -830.63 -2.05 -21.89 16 10 C 0.13 3.98 5.70 84.23 0.48 4.46 16 11 C -0.15 -5.50 5.64 29.04 0.16 -5.33 16 12 C 0.16 6.38 5.63 87.21 0.49 6.87 16 13 N -0.61 -28.99 2.38 -697.52 -1.66 -30.65 16 14 C -0.35 -19.83 9.12 84.03 0.77 -19.06 16 15 H 0.03 1.81 7.96 -2.91 -0.02 1.78 16 16 C -0.06 -3.31 4.60 84.86 0.39 -2.92 16 17 N -0.93 -54.52 12.63 21.65 0.27 -54.24 16 18 Si 1.09 52.16 29.99 68.60 2.06 54.22 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 21 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 22 C 0.14 5.91 5.09 86.66 0.44 6.35 16 23 C 0.10 2.95 5.05 87.65 0.44 3.39 16 24 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.08 1.32 8.12 -2.39 -0.02 1.30 16 26 H 0.06 1.37 6.47 -2.39 -0.02 1.35 16 27 H 0.07 1.28 8.12 -2.38 -0.02 1.26 16 28 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 29 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 1.07 8.12 -2.39 -0.02 1.05 16 31 H 0.07 1.83 8.06 -2.38 -0.02 1.81 16 32 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 33 H 0.07 1.95 6.51 -2.39 -0.02 1.94 16 34 H 0.12 2.69 7.37 -2.38 -0.02 2.67 16 35 H 0.08 2.85 7.34 -2.39 -0.02 2.83 16 36 H 0.07 2.37 7.13 -2.39 -0.02 2.35 16 37 H 0.10 2.37 8.05 -2.39 -0.02 2.35 16 38 H 0.02 1.00 7.91 -2.39 -0.02 0.98 16 39 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.03 1.27 8.02 -2.39 -0.02 1.25 16 41 H 0.06 2.04 7.59 -2.39 -0.02 2.02 16 42 H 0.26 15.10 6.37 -92.71 -0.59 14.51 16 43 H 0.03 1.15 7.11 -2.39 -0.02 1.13 16 44 H 0.04 1.82 6.22 -2.39 -0.01 1.80 16 45 H 0.10 2.44 6.38 -2.39 -0.02 2.42 16 46 H 0.09 2.32 7.72 -2.39 -0.02 2.30 16 Total: -1.00 -70.66 351.46 1.88 -68.79 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.11 Total: 15.64 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: 6.95 Total: 12.21 kcal Atomic # 7 Polarization: -116.97 SS G_CDS: -8.19 Total: -125.16 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 52.16 SS G_CDS: 2.06 Total: 54.22 kcal Total: -70.66 1.88 -68.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196970759.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.167 kcal (2) G-P(sol) polarization free energy of solvation -70.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds