Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46951 * 111.00243 * 2 1 4 4 C 1.53047 * 109.36528 * 183.18748 * 3 2 1 5 5 N 1.46951 * 109.36609 * 301.60079 * 4 3 2 6 6 C 1.46906 * 111.00130 * 183.18580 * 5 4 3 7 7 C 1.53002 * 109.46933 * 52.44509 * 6 5 4 8 8 O 1.42903 * 109.46728 * 62.61837 * 7 6 5 9 9 C 1.42908 * 113.99617 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.63939 * 333.13891 * 9 8 7 11 11 C 1.55162 * 110.71648 * 210.00053 * 9 8 7 12 12 C 1.54908 * 101.57586 * 206.13401 * 11 9 8 13 13 N 1.47427 * 104.83491 * 37.01254 * 12 11 9 14 14 C 1.36937 * 125.64730 * 155.91714 * 13 12 11 15 15 H 1.07999 * 119.99488 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00180 * 359.97250 * 14 13 12 17 17 N 1.31626 * 120.00032 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99950 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46914 * 90.00024 * 18 16 14 20 20 H 1.48497 * 109.46694 * 209.99717 * 18 16 14 21 21 H 1.48492 * 109.46980 * 329.99738 * 18 16 14 22 22 C 1.47015 * 108.69990 * 335.86815 * 13 12 11 23 23 C 1.46961 * 110.88025 * 59.31873 * 5 4 3 24 24 C 1.46962 * 110.99659 * 123.80361 * 2 1 3 25 25 H 1.08992 * 109.46770 * 59.99560 * 1 2 3 26 26 H 1.08993 * 109.46956 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46282 * 299.99997 * 1 2 3 28 28 H 1.09002 * 109.48721 * 303.15901 * 3 2 1 29 29 H 1.09008 * 109.48816 * 63.22384 * 3 2 1 30 30 H 1.09006 * 109.48784 * 61.56897 * 4 3 2 31 31 H 1.09000 * 109.48981 * 181.63250 * 4 3 2 32 32 H 1.08993 * 109.46961 * 172.44579 * 6 5 4 33 33 H 1.08995 * 109.46981 * 292.44694 * 6 5 4 34 34 H 1.08997 * 109.47227 * 182.61718 * 7 6 5 35 35 H 1.08996 * 109.47017 * 302.62134 * 7 6 5 36 36 H 1.08996 * 111.00574 * 324.20807 * 11 9 8 37 37 H 1.08996 * 111.00262 * 88.02626 * 11 9 8 38 38 H 1.09008 * 110.36471 * 155.84831 * 12 11 9 39 39 H 1.08994 * 110.36735 * 278.05634 * 12 11 9 40 40 H 0.96996 * 119.99699 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.87974 * 241.64055 * 22 13 12 42 42 H 1.09002 * 109.88152 * 120.48247 * 22 13 12 43 43 H 1.09002 * 109.48665 * 180.71066 * 23 5 4 44 44 H 1.08999 * 109.50445 * 60.65728 * 23 5 4 45 45 H 1.08998 * 109.48625 * 296.77484 * 24 2 1 46 46 H 1.08993 * 109.49221 * 56.82093 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0502 0.5657 1.0597 6 6 5.5192 0.5656 1.0597 7 6 6.0293 2.0051 0.9652 8 8 5.6038 2.7376 2.1161 9 6 6.0293 4.1018 2.1268 10 1 6.9468 4.2226 1.5508 11 6 6.2243 4.6046 3.5816 12 6 5.9943 6.1277 3.4175 13 7 4.9203 6.2414 2.4140 14 6 4.0684 7.3043 2.2736 15 1 3.3116 7.2915 1.5033 16 6 4.1775 8.3979 3.1215 17 7 5.1002 8.4135 4.0601 18 14 3.0148 9.8475 2.9305 19 1 1.8102 9.6300 3.7712 20 1 3.7008 11.0922 3.3610 21 1 2.6094 9.9726 1.5075 22 6 4.9163 5.0251 1.5882 23 6 3.5234 -0.8062 1.0597 24 6 1.9957 -0.7633 1.1401 25 1 -0.3632 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6014 1.9128 -0.8602 29 1 1.6939 1.8773 0.9174 30 1 3.8254 0.8478 -1.0107 31 1 3.9179 2.3447 -0.0512 32 1 5.8825 0.1112 1.9814 33 1 5.8825 -0.0053 0.2053 34 1 7.1182 2.0023 0.9184 35 1 5.6281 2.4744 0.0671 36 1 5.4819 4.1671 4.2490 37 1 7.2344 4.3973 3.9346 38 1 5.6778 6.5677 4.3633 39 1 6.9028 6.6122 3.0599 40 1 5.1762 9.1776 4.6528 41 1 5.1188 5.2823 0.5484 42 1 3.9502 4.5264 1.6674 43 1 3.9178 -1.3472 1.9200 44 1 3.8253 -1.3119 0.1425 45 1 1.6938 -0.2822 2.0704 46 1 1.6010 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224548567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = 3.926121 kcal Electronic energy + Delta-G solvation = -23419.583204 eV Core-core repulsion = 20152.493427 eV Total energy + Delta-G solvation = -3267.089777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.50952 -38.20443 -36.29664 -35.07905 -32.18721 -31.09024 -30.23784 -29.04965 -27.32288 -26.65520 -24.37626 -24.08957 -23.50200 -21.54187 -20.12980 -20.08133 -19.75668 -16.94069 -16.61486 -16.49215 -15.37305 -15.11945 -14.97294 -14.77759 -14.75675 -14.56986 -14.08014 -13.70490 -13.54944 -13.10477 -12.62964 -12.41577 -12.34375 -12.07181 -11.91981 -11.63509 -11.48562 -11.32820 -11.27400 -11.04763 -10.93751 -10.78490 -10.71260 -10.55018 -10.16595 -10.08541 -9.71841 -9.48854 -8.96686 -8.61562 -8.53939 -8.26969 -6.79140 -5.61613 -3.03158 3.42630 3.47099 3.49271 3.75055 3.82354 4.04014 4.53595 4.75339 4.86628 4.94317 5.10510 5.17598 5.25062 5.29958 5.36540 5.39971 5.43021 5.44829 5.51517 5.52598 5.57167 5.57803 5.68328 5.68756 5.79539 5.82792 5.91324 5.95867 5.96301 6.00107 6.41484 6.59170 6.66610 6.73400 6.78912 6.82045 6.83546 7.06563 7.07526 7.54190 7.66447 7.76574 7.90366 8.39908 9.25640 9.86641 10.51584 11.42504 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.004041 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.067264 B = 6928.106852 C = 8092.451790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.056 3.944 4 C 0.055 3.945 5 N -0.528 5.528 6 C 0.061 3.939 7 C 0.059 3.941 8 O -0.360 6.360 9 C 0.074 3.926 10 H 0.059 0.941 11 C -0.138 4.138 12 C 0.153 3.847 13 N -0.602 5.602 14 C -0.220 4.220 15 H 0.077 0.923 16 C -0.012 4.012 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.121 3.879 23 C 0.058 3.942 24 C 0.056 3.944 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.027 0.973 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.016 0.984 42 H 0.034 0.966 43 H 0.078 0.922 44 H 0.038 0.962 45 H 0.044 0.956 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.718 -18.944 -7.316 20.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.072 4.072 4 C -0.073 4.073 5 N -0.253 5.253 6 C -0.067 4.067 7 C -0.018 4.018 8 O -0.278 6.278 9 C 0.016 3.984 10 H 0.077 0.923 11 C -0.177 4.177 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.348 4.348 15 H 0.095 0.905 16 C -0.207 4.207 17 N -0.572 5.572 18 Si 0.745 3.255 19 H -0.216 1.216 20 H -0.217 1.217 21 H -0.208 1.208 22 C -0.006 4.006 23 C -0.070 4.070 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.084 0.916 27 H 0.046 0.954 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.052 0.948 43 H 0.096 0.904 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.867 -18.817 -7.083 20.192 hybrid contribution -0.389 0.878 -0.415 1.046 sum -2.256 -17.938 -7.498 19.573 Atomic orbital electron populations 1.22336 0.87307 1.01796 1.00892 1.62207 1.07801 1.14462 1.42790 1.22174 0.94641 0.88859 1.01517 1.22237 0.94324 0.99463 0.91296 1.62085 1.07147 1.13040 1.43028 1.22117 0.87503 0.95673 1.01382 1.22573 0.97417 0.91829 0.90021 1.88052 1.76770 1.22154 1.40864 1.23230 0.95878 0.80807 0.98518 0.92294 1.23140 1.00404 0.99781 0.94330 1.21938 0.90063 0.88321 0.96902 1.44386 1.37102 1.15978 1.35439 1.19084 1.08931 0.93665 1.13140 0.90527 1.24785 0.99090 0.98501 0.98352 1.69789 1.35269 1.30498 1.21683 0.86067 0.79997 0.81919 0.77502 1.21584 1.21654 1.20766 1.21659 0.96661 0.88556 0.93705 1.22136 0.94443 0.89746 1.00704 1.22152 0.94589 0.98160 0.92292 0.91374 0.91575 0.95418 0.90356 0.93369 0.94539 0.89311 0.89856 0.93843 0.93334 0.93352 0.91162 0.92216 0.87297 0.96992 0.93744 0.96578 0.94775 0.90353 0.94376 0.93729 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.60 60.07 0.58 0.81 16 2 N -0.55 -6.15 4.97 -242.76 -1.21 -7.36 16 3 C 0.06 0.69 5.62 -3.77 -0.02 0.67 16 4 C 0.05 0.69 5.13 -3.77 -0.02 0.67 16 5 N -0.53 -6.73 4.73 -234.47 -1.11 -7.84 16 6 C 0.06 0.71 5.53 -3.82 -0.02 0.68 16 7 C 0.06 0.78 5.42 37.16 0.20 0.99 16 8 O -0.36 -6.28 9.98 -35.23 -0.35 -6.63 16 9 C 0.07 1.41 3.45 -24.90 -0.09 1.32 16 10 H 0.06 1.04 7.82 -51.93 -0.41 0.63 16 11 C -0.14 -2.83 6.81 -24.58 -0.17 -2.99 16 12 C 0.15 3.84 5.89 -2.53 -0.01 3.83 16 13 N -0.60 -16.11 3.39 -170.08 -0.58 -16.69 16 14 C -0.22 -6.31 10.27 -15.06 -0.15 -6.47 16 15 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 16 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 17 N -0.92 -27.39 10.09 55.49 0.56 -26.83 16 18 Si 0.91 22.42 29.55 -169.99 -5.02 17.39 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.12 2.69 7.02 -3.07 -0.02 2.67 16 23 C 0.06 0.62 5.62 -3.77 -0.02 0.60 16 24 C 0.06 0.59 5.62 -3.77 -0.02 0.57 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 27 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 1.23 5.95 -51.93 -0.31 0.92 16 32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 35 H 0.05 0.64 6.09 -51.93 -0.32 0.32 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.11 3.06 5.88 -51.92 -0.31 2.76 16 39 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.79 8.06 -51.93 -0.42 0.37 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 353.78 15.07 5.33 5.33 Total: -1.00 -31.41 353.78 -10.73 -42.14 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -8.49 Total: -2.41 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 0.13 Total: 2.90 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -2.33 Total: -58.72 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.35 Total: -6.63 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.41 -10.73 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224548567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.066 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds