Wall clock time and date at job start Wed Apr 15 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46909 * 1 3 3 C 1.46951 * 111.00243 * 2 1 4 4 C 1.53047 * 109.36528 * 183.18748 * 3 2 1 5 5 N 1.46951 * 109.36609 * 301.60079 * 4 3 2 6 6 C 1.46906 * 111.00130 * 183.18580 * 5 4 3 7 7 C 1.53002 * 109.46933 * 52.44509 * 6 5 4 8 8 O 1.42903 * 109.46728 * 62.61837 * 7 6 5 9 9 C 1.42908 * 113.99617 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.63939 * 333.13891 * 9 8 7 11 11 C 1.55162 * 110.71648 * 210.00053 * 9 8 7 12 12 C 1.54908 * 101.57586 * 206.13401 * 11 9 8 13 13 N 1.47427 * 104.83491 * 37.01254 * 12 11 9 14 14 C 1.36937 * 125.64730 * 155.91714 * 13 12 11 15 15 H 1.07999 * 119.99488 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00180 * 359.97250 * 14 13 12 17 17 N 1.31626 * 120.00032 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99950 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46914 * 90.00024 * 18 16 14 20 20 H 1.48497 * 109.46694 * 209.99717 * 18 16 14 21 21 H 1.48492 * 109.46980 * 329.99738 * 18 16 14 22 22 C 1.47015 * 108.69990 * 335.86815 * 13 12 11 23 23 C 1.46961 * 110.88025 * 59.31873 * 5 4 3 24 24 C 1.46962 * 110.99659 * 123.80361 * 2 1 3 25 25 H 1.08992 * 109.46770 * 59.99560 * 1 2 3 26 26 H 1.08993 * 109.46956 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46282 * 299.99997 * 1 2 3 28 28 H 1.09002 * 109.48721 * 303.15901 * 3 2 1 29 29 H 1.09008 * 109.48816 * 63.22384 * 3 2 1 30 30 H 1.09006 * 109.48784 * 61.56897 * 4 3 2 31 31 H 1.09000 * 109.48981 * 181.63250 * 4 3 2 32 32 H 1.08993 * 109.46961 * 172.44579 * 6 5 4 33 33 H 1.08995 * 109.46981 * 292.44694 * 6 5 4 34 34 H 1.08997 * 109.47227 * 182.61718 * 7 6 5 35 35 H 1.08996 * 109.47017 * 302.62134 * 7 6 5 36 36 H 1.08996 * 111.00574 * 324.20807 * 11 9 8 37 37 H 1.08996 * 111.00262 * 88.02626 * 11 9 8 38 38 H 1.09008 * 110.36471 * 155.84831 * 12 11 9 39 39 H 1.08994 * 110.36735 * 278.05634 * 12 11 9 40 40 H 0.96996 * 119.99699 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.87974 * 241.64055 * 22 13 12 42 42 H 1.09002 * 109.88152 * 120.48247 * 22 13 12 43 43 H 1.09002 * 109.48665 * 180.71066 * 23 5 4 44 44 H 1.08999 * 109.50445 * 60.65728 * 23 5 4 45 45 H 1.08998 * 109.48625 * 296.77484 * 24 2 1 46 46 H 1.08993 * 109.49221 * 56.82093 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9958 1.3719 0.0000 4 6 3.5235 1.3290 -0.0803 5 7 4.0502 0.5657 1.0597 6 6 5.5192 0.5656 1.0597 7 6 6.0293 2.0051 0.9652 8 8 5.6038 2.7376 2.1161 9 6 6.0293 4.1018 2.1268 10 1 6.9468 4.2226 1.5508 11 6 6.2243 4.6046 3.5816 12 6 5.9943 6.1277 3.4175 13 7 4.9203 6.2414 2.4140 14 6 4.0684 7.3043 2.2736 15 1 3.3116 7.2915 1.5033 16 6 4.1775 8.3979 3.1215 17 7 5.1002 8.4135 4.0601 18 14 3.0148 9.8475 2.9305 19 1 1.8102 9.6300 3.7712 20 1 3.7008 11.0922 3.3610 21 1 2.6094 9.9726 1.5075 22 6 4.9163 5.0251 1.5882 23 6 3.5234 -0.8062 1.0597 24 6 1.9957 -0.7633 1.1401 25 1 -0.3632 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 1.6014 1.9128 -0.8602 29 1 1.6939 1.8773 0.9174 30 1 3.8254 0.8478 -1.0107 31 1 3.9179 2.3447 -0.0512 32 1 5.8825 0.1112 1.9814 33 1 5.8825 -0.0053 0.2053 34 1 7.1182 2.0023 0.9184 35 1 5.6281 2.4744 0.0671 36 1 5.4819 4.1671 4.2490 37 1 7.2344 4.3973 3.9346 38 1 5.6778 6.5677 4.3633 39 1 6.9028 6.6122 3.0599 40 1 5.1762 9.1776 4.6528 41 1 5.1188 5.2823 0.5484 42 1 3.9502 4.5264 1.6674 43 1 3.9178 -1.3472 1.9200 44 1 3.8253 -1.3119 0.1425 45 1 1.6938 -0.2822 2.0704 46 1 1.6010 -1.7789 1.1112 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224548567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:51 Heat of formation + Delta-G solvation = -18.642757 kcal Electronic energy + Delta-G solvation = -23420.561864 eV Core-core repulsion = 20152.493427 eV Total energy + Delta-G solvation = -3268.068437 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.48507 -39.66687 -37.72740 -36.25592 -34.16560 -32.01855 -31.44592 -30.77830 -28.83596 -27.90023 -26.28915 -25.08715 -24.37932 -22.56707 -21.99049 -21.74303 -20.70275 -18.97731 -17.91955 -17.54469 -16.76055 -16.41913 -16.13857 -15.98076 -15.80996 -15.75663 -15.49150 -15.11189 -14.78691 -14.47173 -14.23444 -13.62063 -13.52472 -13.41364 -13.23052 -12.96505 -12.88328 -12.76762 -12.59271 -12.39328 -12.28496 -12.23379 -12.02571 -11.99188 -11.79085 -11.69148 -11.45113 -11.28828 -10.76258 -10.36350 -9.43769 -9.17123 -8.91308 -7.78735 -5.23937 1.45816 1.48447 1.57020 2.47158 2.71542 2.93602 2.98157 3.31698 3.72675 3.83907 3.89550 3.97509 4.07217 4.10038 4.20096 4.24221 4.28093 4.36229 4.42333 4.47803 4.56722 4.60082 4.60240 4.66698 4.67000 4.82179 4.83486 4.87996 4.94398 4.97352 5.01152 5.03361 5.06452 5.07589 5.10955 5.43787 5.60884 5.77555 5.93708 5.95880 6.16433 6.18852 6.28290 6.46832 7.08922 7.75469 8.39457 9.23440 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.018212 B = 0.004041 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.067264 B = 6928.106852 C = 8092.451790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.058 3.942 4 C 0.060 3.940 5 N -0.552 5.552 6 C 0.065 3.935 7 C 0.051 3.949 8 O -0.373 6.373 9 C 0.092 3.908 10 H 0.082 0.918 11 C -0.125 4.125 12 C 0.155 3.845 13 N -0.625 5.625 14 C -0.243 4.243 15 H 0.078 0.922 16 C -0.065 4.065 17 N -0.949 5.949 18 Si 0.982 3.018 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.270 1.270 22 C 0.120 3.880 23 C 0.060 3.940 24 C 0.056 3.944 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.018 0.982 28 H 0.085 0.915 29 H 0.020 0.980 30 H 0.045 0.955 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.075 0.925 39 H -0.004 1.004 40 H 0.249 0.751 41 H 0.023 0.977 42 H 0.021 0.979 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.025 0.975 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 -20.626 -8.455 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.070 4.070 4 C -0.068 4.068 5 N -0.278 5.278 6 C -0.062 4.062 7 C -0.025 4.025 8 O -0.291 6.291 9 C 0.034 3.966 10 H 0.099 0.901 11 C -0.163 4.163 12 C 0.030 3.970 13 N -0.352 5.352 14 C -0.371 4.371 15 H 0.096 0.904 16 C -0.258 4.258 17 N -0.598 5.598 18 Si 0.810 3.190 19 H -0.212 1.212 20 H -0.216 1.216 21 H -0.195 1.195 22 C -0.006 4.006 23 C -0.068 4.068 24 C -0.073 4.073 25 H 0.093 0.907 26 H 0.102 0.898 27 H 0.037 0.963 28 H 0.103 0.897 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.014 0.986 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.687 -20.538 -8.241 22.194 hybrid contribution -0.470 1.333 -0.088 1.416 sum -2.157 -19.205 -8.329 21.044 Atomic orbital electron populations 1.22404 0.86249 1.02936 1.00783 1.62267 1.08847 1.13487 1.42947 1.22119 0.94922 0.89598 1.00387 1.22116 0.94185 0.98679 0.91782 1.62079 1.08058 1.14355 1.43275 1.22130 0.86869 0.94648 1.02596 1.22868 0.98875 0.92264 0.88518 1.88035 1.77196 1.21045 1.42858 1.22927 0.95264 0.81288 0.97142 0.90054 1.22948 1.01854 0.96073 0.95471 1.21723 0.88901 0.91425 0.94942 1.44701 1.37112 1.16799 1.36618 1.19448 1.09554 0.94749 1.13381 0.90401 1.25655 1.00806 1.01169 0.98139 1.70038 1.36635 1.30928 1.22239 0.85024 0.77793 0.78244 0.77934 1.21224 1.21645 1.19483 1.21784 0.97502 0.87718 0.93614 1.22174 0.94254 0.88766 1.01568 1.22222 0.94907 0.98954 0.91178 0.90740 0.89798 0.96296 0.89691 0.96174 0.93648 0.91052 0.89530 0.91384 0.91104 0.93325 0.92254 0.89077 0.90657 0.98571 0.94168 0.95916 0.96091 0.89196 0.93586 0.95626 0.88366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.60 127.69 1.23 1.65 16 2 N -0.55 -11.70 4.97 -921.94 -4.58 -16.28 16 3 C 0.06 1.42 5.62 86.31 0.49 1.91 16 4 C 0.06 1.47 5.13 86.31 0.44 1.91 16 5 N -0.55 -13.24 4.73 -895.72 -4.23 -17.47 16 6 C 0.06 1.33 5.53 86.30 0.48 1.81 16 7 C 0.05 1.24 5.42 71.98 0.39 1.63 16 8 O -0.37 -12.39 9.98 -148.98 -1.49 -13.88 16 9 C 0.09 3.39 3.45 31.78 0.11 3.50 16 10 H 0.08 2.65 7.82 -2.39 -0.02 2.63 16 11 C -0.12 -5.03 6.81 31.99 0.22 -4.81 16 12 C 0.16 7.97 5.89 86.85 0.51 8.48 16 13 N -0.63 -34.08 3.39 -692.00 -2.35 -36.43 16 14 C -0.24 -14.18 10.27 84.03 0.86 -13.32 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 16 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 17 N -0.95 -57.66 10.09 21.65 0.22 -57.44 16 18 Si 0.98 46.57 29.55 68.60 2.03 48.60 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 22 C 0.12 5.34 7.02 86.73 0.61 5.95 16 23 C 0.06 1.15 5.62 86.31 0.48 1.64 16 24 C 0.06 1.09 5.62 86.31 0.49 1.58 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.16 8.13 -2.39 -0.02 1.14 16 27 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.95 5.95 -2.39 -0.01 1.94 16 32 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 35 H 0.05 1.19 6.09 -2.39 -0.01 1.17 16 36 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.09 3.08 8.14 -2.39 -0.02 3.07 16 38 H 0.08 4.39 5.88 -2.38 -0.01 4.38 16 39 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 41 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.02 0.99 8.06 -2.39 -0.02 0.97 16 43 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.10 1.48 8.13 -2.39 -0.02 1.46 16 Total: -1.00 -68.45 353.78 -2.72 -71.17 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.92 Total: 13.15 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.77 Total: 8.59 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -10.94 Total: -127.62 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: -1.49 Total: -13.88 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -68.45 -2.72 -71.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224548567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.525 kcal (2) G-P(sol) polarization free energy of solvation -68.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds