Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46961 * 110.99772 * 2 1 4 4 C 1.53052 * 109.36175 * 183.18716 * 3 2 1 5 5 N 1.46951 * 109.36772 * 301.59734 * 4 3 2 6 6 C 1.46900 * 111.00217 * 183.18815 * 5 4 3 7 7 C 1.53000 * 109.47045 * 75.78113 * 6 5 4 8 8 O 1.42899 * 109.47563 * 65.05340 * 7 6 5 9 9 C 1.42897 * 114.00146 * 180.02562 * 8 7 6 10 10 H 1.08994 * 110.63949 * 26.85672 * 9 8 7 11 11 C 1.55158 * 110.71998 * 150.00434 * 9 8 7 12 12 C 1.54905 * 101.58467 * 153.86329 * 11 9 8 13 13 N 1.47425 * 104.83198 * 322.99073 * 12 11 9 14 14 C 1.36937 * 125.64958 * 204.09316 * 13 12 11 15 15 H 1.08004 * 120.00010 * 180.02562 * 14 13 12 16 16 C 1.38808 * 119.99666 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00166 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99689 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47057 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47422 * 299.99672 * 18 16 14 21 21 H 1.48498 * 109.47489 * 60.00085 * 18 16 14 22 22 C 1.47026 * 108.70247 * 24.35427 * 13 12 11 23 23 C 1.46961 * 110.87896 * 59.32276 * 5 4 3 24 24 C 1.46957 * 110.99932 * 123.79895 * 2 1 3 25 25 H 1.08997 * 109.46856 * 59.99782 * 1 2 3 26 26 H 1.08995 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46983 * 300.00198 * 1 2 3 28 28 H 1.08994 * 109.48990 * 63.22349 * 3 2 1 29 29 H 1.08997 * 109.50421 * 303.16383 * 3 2 1 30 30 H 1.09001 * 109.48870 * 181.62931 * 4 3 2 31 31 H 1.09004 * 109.49065 * 61.56668 * 4 3 2 32 32 H 1.08995 * 109.47341 * 315.77405 * 6 5 4 33 33 H 1.09007 * 109.47129 * 195.77646 * 6 5 4 34 34 H 1.09006 * 109.46823 * 305.05494 * 7 6 5 35 35 H 1.09002 * 109.46953 * 185.05567 * 7 6 5 36 36 H 1.09005 * 111.00369 * 35.78404 * 11 9 8 37 37 H 1.09006 * 111.00073 * 271.93603 * 11 9 8 38 38 H 1.08994 * 110.36827 * 204.15325 * 12 11 9 39 39 H 1.09004 * 110.36551 * 81.82366 * 12 11 9 40 40 H 0.97009 * 119.99502 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.88176 * 118.13537 * 22 13 12 42 42 H 1.09004 * 109.88110 * 239.29936 * 22 13 12 43 43 H 1.08994 * 109.48990 * 60.64445 * 23 5 4 44 44 H 1.08999 * 109.48741 * 180.71860 * 23 5 4 45 45 H 1.09002 * 109.48544 * 296.77666 * 24 2 1 46 46 H 1.08993 * 109.48891 * 56.84599 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5660 1.0598 6 6 5.5191 0.5660 1.0598 7 6 6.0291 1.9251 1.5432 8 8 5.6521 2.1174 2.9081 9 6 6.0816 3.3637 3.4596 10 1 6.1876 4.1143 2.6764 11 6 5.0952 3.8485 4.5547 12 6 6.0166 4.7280 5.4361 13 7 7.3137 4.0274 5.4425 14 6 8.2761 4.1386 6.4103 15 1 9.1971 3.5813 6.3226 16 6 8.0679 4.9676 7.5040 17 7 6.9454 5.6463 7.6111 18 14 9.3810 5.1198 8.8239 19 1 8.9181 6.0593 9.8767 20 1 9.6334 3.7865 9.4272 21 1 10.6352 5.6341 8.2175 22 6 7.4055 3.1944 4.2345 23 6 3.5235 -0.8060 1.0598 24 6 1.9956 -0.7632 1.1401 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6938 1.8774 0.9173 29 1 1.6013 1.9132 -0.8601 30 1 3.9177 2.3449 -0.0513 31 1 3.8254 0.8480 -1.0106 32 1 5.8824 0.3800 0.0491 33 1 5.8824 -0.2164 1.7262 34 1 5.5936 2.7151 0.9312 35 1 7.1153 1.9567 1.4583 36 1 4.6979 3.0072 5.1228 37 1 4.2892 4.4400 4.1204 38 1 5.6187 4.7986 6.4484 39 1 6.1240 5.7210 4.9996 40 1 6.7998 6.2254 8.3757 41 1 8.2424 3.5247 3.6192 42 1 7.5381 2.1492 4.5141 43 1 3.8253 -1.3114 0.1425 44 1 3.9178 -1.3468 1.9201 45 1 1.6937 -0.2820 2.0704 46 1 1.6013 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224548568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = 1.272963 kcal Electronic energy + Delta-G solvation = -23013.113364 eV Core-core repulsion = 19745.908538 eV Total energy + Delta-G solvation = -3267.204826 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.50915 -38.19519 -36.27777 -35.13295 -32.17966 -31.14774 -30.33501 -29.03416 -27.35026 -26.67414 -24.31395 -24.04533 -23.62119 -21.62901 -20.10872 -20.05849 -19.89494 -16.92934 -16.73325 -16.24902 -15.52435 -15.22433 -15.04561 -14.87460 -14.65083 -14.52133 -14.25372 -13.85648 -13.27027 -13.07802 -12.72615 -12.60323 -12.31652 -12.19660 -11.87852 -11.64030 -11.48351 -11.43984 -11.32185 -11.11505 -10.93705 -10.76674 -10.73236 -10.61344 -10.15880 -10.10064 -9.70537 -9.46849 -8.93200 -8.63862 -8.60627 -8.34026 -6.78439 -5.60646 -3.02380 3.43713 3.47301 3.49003 3.67609 3.74506 4.06012 4.54117 4.66973 4.78904 4.89167 5.05372 5.12290 5.17825 5.26048 5.31183 5.32683 5.37682 5.43296 5.49198 5.51133 5.56795 5.58512 5.62317 5.68480 5.71077 5.82845 5.83921 5.87587 5.88683 5.98913 6.44316 6.61020 6.69691 6.70952 6.73573 6.76010 6.81432 6.99278 7.01154 7.55708 7.66928 7.80720 7.92154 8.41024 9.26466 9.87443 10.52592 11.43284 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.002991 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.821148 B = 9358.545008 C = 9640.816941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.056 3.944 5 N -0.529 5.529 6 C 0.059 3.941 7 C 0.068 3.932 8 O -0.361 6.361 9 C 0.076 3.924 10 H 0.058 0.942 11 C -0.136 4.136 12 C 0.152 3.848 13 N -0.602 5.602 14 C -0.221 4.221 15 H 0.077 0.923 16 C -0.013 4.013 17 N -0.924 5.924 18 Si 0.916 3.084 19 H -0.290 1.290 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.118 3.882 23 C 0.059 3.941 24 C 0.056 3.944 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.027 0.973 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.039 0.961 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.049 0.951 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.018 0.982 42 H 0.033 0.967 43 H 0.038 0.962 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 -10.773 -17.295 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.072 4.072 5 N -0.254 5.254 6 C -0.069 4.069 7 C -0.010 4.010 8 O -0.279 6.279 9 C 0.018 3.982 10 H 0.076 0.924 11 C -0.174 4.174 12 C 0.028 3.972 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.094 0.906 16 C -0.208 4.208 17 N -0.572 5.572 18 Si 0.746 3.254 19 H -0.216 1.216 20 H -0.212 1.212 21 H -0.213 1.213 22 C -0.008 4.008 23 C -0.069 4.069 24 C -0.072 4.072 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.127 0.873 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.036 0.964 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.364 -10.802 -16.987 22.642 hybrid contribution 0.882 0.360 0.413 1.039 sum -9.482 -10.442 -16.574 21.763 Atomic orbital electron populations 1.22336 0.87275 1.01963 1.00743 1.62191 1.07801 1.14189 1.43044 1.22159 0.94634 0.89187 1.01186 1.22194 0.94345 0.98966 0.91676 1.62040 1.07430 1.13464 1.42479 1.22127 0.87190 0.98123 0.99436 1.22441 0.97610 0.96177 0.84726 1.88017 1.77816 1.37826 1.24285 1.23186 0.95636 0.84533 0.94852 0.92382 1.23111 0.97423 1.00242 0.96665 1.21950 0.83899 0.91019 1.00376 1.44392 1.17213 1.50693 1.20633 1.19047 0.95903 1.21742 0.98244 0.90557 1.24792 0.97848 0.99340 0.98794 1.69783 1.24273 1.32396 1.30796 0.86135 0.80588 0.77413 0.81250 1.21561 1.21157 1.21259 1.21691 0.94337 0.95507 0.89287 1.22151 0.94286 0.89598 1.00875 1.22175 0.94686 0.98226 0.92130 0.91445 0.91463 0.95450 0.93591 0.90483 0.90179 0.94321 0.93438 0.89896 0.93913 0.93310 0.91233 0.92274 0.87290 0.97038 0.93690 0.96434 0.94947 0.94369 0.90055 0.93609 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 60.06 0.58 0.78 16 2 N -0.55 -5.40 4.97 -242.76 -1.21 -6.61 16 3 C 0.06 0.57 5.62 -3.76 -0.02 0.55 16 4 C 0.06 0.59 5.43 -3.77 -0.02 0.57 16 5 N -0.53 -6.32 4.59 -234.46 -1.08 -7.39 16 6 C 0.06 0.68 5.39 -3.82 -0.02 0.66 16 7 C 0.07 0.92 5.97 37.16 0.22 1.14 16 8 O -0.36 -6.41 10.02 -35.23 -0.35 -6.76 16 9 C 0.08 1.47 3.44 -24.89 -0.09 1.39 16 10 H 0.06 1.05 7.82 -51.93 -0.41 0.64 16 11 C -0.14 -2.83 6.81 -24.58 -0.17 -3.00 16 12 C 0.15 3.87 5.89 -2.53 -0.01 3.86 16 13 N -0.60 -16.26 3.39 -170.07 -0.58 -16.84 16 14 C -0.22 -6.39 10.27 -15.06 -0.15 -6.54 16 15 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 16 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 17 N -0.92 -27.53 10.09 55.49 0.56 -26.97 16 18 Si 0.92 22.50 29.55 -169.99 -5.02 17.48 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.12 2.67 7.03 -3.06 -0.02 2.65 16 23 C 0.06 0.62 5.57 -3.76 -0.02 0.59 16 24 C 0.06 0.55 5.62 -3.76 -0.02 0.53 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.83 6.72 -51.93 -0.35 0.49 16 31 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.46 8.00 -51.93 -0.42 0.04 16 33 H 0.08 0.97 7.85 -51.92 -0.41 0.56 16 34 H 0.04 0.54 6.71 -51.93 -0.35 0.19 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.11 3.08 5.87 -51.93 -0.30 2.78 16 39 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.94 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 43 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.82 8.00 -51.93 -0.42 0.41 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 LS Contribution 355.16 15.07 5.35 5.35 Total: -1.00 -31.69 355.16 -10.70 -42.39 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -8.53 Total: -3.37 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 0.15 Total: 2.72 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -2.30 Total: -57.81 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.35 Total: -6.76 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.69 -10.70 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224548568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.662 kcal (2) G-P(sol) polarization free energy of solvation -31.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds