Wall clock time and date at job start Wed Apr 15 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46961 * 110.99772 * 2 1 4 4 C 1.53052 * 109.36175 * 183.18716 * 3 2 1 5 5 N 1.46951 * 109.36772 * 301.59734 * 4 3 2 6 6 C 1.46900 * 111.00217 * 183.18815 * 5 4 3 7 7 C 1.53000 * 109.47045 * 75.78113 * 6 5 4 8 8 O 1.42899 * 109.47563 * 65.05340 * 7 6 5 9 9 C 1.42897 * 114.00146 * 180.02562 * 8 7 6 10 10 H 1.08994 * 110.63949 * 26.85672 * 9 8 7 11 11 C 1.55158 * 110.71998 * 150.00434 * 9 8 7 12 12 C 1.54905 * 101.58467 * 153.86329 * 11 9 8 13 13 N 1.47425 * 104.83198 * 322.99073 * 12 11 9 14 14 C 1.36937 * 125.64958 * 204.09316 * 13 12 11 15 15 H 1.08004 * 120.00010 * 180.02562 * 14 13 12 16 16 C 1.38808 * 119.99666 * 0.02562 * 14 13 12 17 17 N 1.31617 * 120.00166 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99689 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47057 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47422 * 299.99672 * 18 16 14 21 21 H 1.48498 * 109.47489 * 60.00085 * 18 16 14 22 22 C 1.47026 * 108.70247 * 24.35427 * 13 12 11 23 23 C 1.46961 * 110.87896 * 59.32276 * 5 4 3 24 24 C 1.46957 * 110.99932 * 123.79895 * 2 1 3 25 25 H 1.08997 * 109.46856 * 59.99782 * 1 2 3 26 26 H 1.08995 * 109.47000 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46983 * 300.00198 * 1 2 3 28 28 H 1.08994 * 109.48990 * 63.22349 * 3 2 1 29 29 H 1.08997 * 109.50421 * 303.16383 * 3 2 1 30 30 H 1.09001 * 109.48870 * 181.62931 * 4 3 2 31 31 H 1.09004 * 109.49065 * 61.56668 * 4 3 2 32 32 H 1.08995 * 109.47341 * 315.77405 * 6 5 4 33 33 H 1.09007 * 109.47129 * 195.77646 * 6 5 4 34 34 H 1.09006 * 109.46823 * 305.05494 * 7 6 5 35 35 H 1.09002 * 109.46953 * 185.05567 * 7 6 5 36 36 H 1.09005 * 111.00369 * 35.78404 * 11 9 8 37 37 H 1.09006 * 111.00073 * 271.93603 * 11 9 8 38 38 H 1.08994 * 110.36827 * 204.15325 * 12 11 9 39 39 H 1.09004 * 110.36551 * 81.82366 * 12 11 9 40 40 H 0.97009 * 119.99502 * 179.97438 * 17 16 14 41 41 H 1.08997 * 109.88176 * 118.13537 * 22 13 12 42 42 H 1.09004 * 109.88110 * 239.29936 * 22 13 12 43 43 H 1.08994 * 109.48990 * 60.64445 * 23 5 4 44 44 H 1.08999 * 109.48741 * 180.71860 * 23 5 4 45 45 H 1.09002 * 109.48544 * 296.77666 * 24 2 1 46 46 H 1.08993 * 109.48891 * 56.84599 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3291 -0.0803 5 7 4.0501 0.5660 1.0598 6 6 5.5191 0.5660 1.0598 7 6 6.0291 1.9251 1.5432 8 8 5.6521 2.1174 2.9081 9 6 6.0816 3.3637 3.4596 10 1 6.1876 4.1143 2.6764 11 6 5.0952 3.8485 4.5547 12 6 6.0166 4.7280 5.4361 13 7 7.3137 4.0274 5.4425 14 6 8.2761 4.1386 6.4103 15 1 9.1971 3.5813 6.3226 16 6 8.0679 4.9676 7.5040 17 7 6.9454 5.6463 7.6111 18 14 9.3810 5.1198 8.8239 19 1 8.9181 6.0593 9.8767 20 1 9.6334 3.7865 9.4272 21 1 10.6352 5.6341 8.2175 22 6 7.4055 3.1944 4.2345 23 6 3.5235 -0.8060 1.0598 24 6 1.9956 -0.7632 1.1401 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6938 1.8774 0.9173 29 1 1.6013 1.9132 -0.8601 30 1 3.9177 2.3449 -0.0513 31 1 3.8254 0.8480 -1.0106 32 1 5.8824 0.3800 0.0491 33 1 5.8824 -0.2164 1.7262 34 1 5.5936 2.7151 0.9312 35 1 7.1153 1.9567 1.4583 36 1 4.6979 3.0072 5.1228 37 1 4.2892 4.4400 4.1204 38 1 5.6187 4.7986 6.4484 39 1 6.1240 5.7210 4.9996 40 1 6.7998 6.2254 8.3757 41 1 8.2424 3.5247 3.6192 42 1 7.5381 2.1492 4.5141 43 1 3.8253 -1.3114 0.1425 44 1 3.9178 -1.3468 1.9201 45 1 1.6937 -0.2820 2.0704 46 1 1.6013 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224548568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:55 Heat of formation + Delta-G solvation = -21.273620 kcal Electronic energy + Delta-G solvation = -23014.091057 eV Core-core repulsion = 19745.908538 eV Total energy + Delta-G solvation = -3268.182519 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.37796 -39.68970 -37.68657 -36.25458 -34.16673 -31.95270 -31.51108 -30.76968 -28.83278 -27.89451 -26.27674 -24.87368 -24.41751 -22.62859 -21.99935 -21.72955 -20.73173 -18.96951 -17.96751 -17.29942 -16.78796 -16.45255 -16.21855 -15.99227 -15.81425 -15.48674 -15.43579 -15.38037 -14.58032 -14.48118 -14.26216 -13.59408 -13.49579 -13.37537 -13.20928 -12.98384 -12.88250 -12.79561 -12.61562 -12.41926 -12.22356 -12.17127 -12.05931 -12.01863 -11.78698 -11.68296 -11.46882 -11.28511 -10.75526 -10.35669 -9.41010 -9.17268 -8.91377 -7.78262 -5.23814 1.46288 1.50365 1.56761 2.47922 2.76080 2.90927 2.99803 3.31987 3.72112 3.87364 3.91171 3.96361 4.09700 4.13387 4.20467 4.26756 4.30438 4.39926 4.43763 4.50060 4.59652 4.61471 4.63066 4.66552 4.68958 4.82364 4.84727 4.90007 4.92032 5.00343 5.02306 5.04343 5.06511 5.07398 5.09919 5.44029 5.60321 5.77409 5.96420 5.97846 6.18174 6.19012 6.28346 6.49295 7.08822 7.75551 8.39761 9.23724 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.034397 B = 0.002991 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.821148 B = 9358.545008 C = 9640.816941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.553 5.553 3 C 0.058 3.942 4 C 0.058 3.942 5 N -0.551 5.551 6 C 0.064 3.936 7 C 0.061 3.939 8 O -0.374 6.374 9 C 0.095 3.905 10 H 0.078 0.922 11 C -0.123 4.123 12 C 0.156 3.844 13 N -0.625 5.625 14 C -0.244 4.244 15 H 0.080 0.920 16 C -0.067 4.067 17 N -0.950 5.950 18 Si 0.985 3.015 19 H -0.291 1.291 20 H -0.277 1.277 21 H -0.277 1.277 22 C 0.115 3.885 23 C 0.061 3.939 24 C 0.058 3.942 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.076 0.924 39 H -0.005 1.005 40 H 0.249 0.751 41 H 0.026 0.974 42 H 0.024 0.976 43 H 0.045 0.955 44 H 0.079 0.921 45 H 0.026 0.974 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.221 -11.593 -18.890 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.278 5.278 3 C -0.071 4.071 4 C -0.070 4.070 5 N -0.276 5.276 6 C -0.064 4.064 7 C -0.016 4.016 8 O -0.293 6.293 9 C 0.036 3.964 10 H 0.096 0.904 11 C -0.161 4.161 12 C 0.031 3.969 13 N -0.353 5.353 14 C -0.373 4.373 15 H 0.098 0.902 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.812 3.188 19 H -0.217 1.217 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.011 4.011 23 C -0.067 4.067 24 C -0.070 4.070 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.039 0.961 28 H 0.045 0.955 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.013 0.987 40 H 0.058 0.942 41 H 0.044 0.956 42 H 0.042 0.958 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.045 0.955 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.292 -11.648 -18.617 24.253 hybrid contribution 0.838 0.569 0.849 1.322 sum -9.454 -11.078 -17.768 22.974 Atomic orbital electron populations 1.22395 0.86160 1.02792 1.00963 1.62245 1.08890 1.13934 1.42698 1.22163 0.94584 0.89400 1.00905 1.22196 0.94490 0.98820 0.91455 1.62025 1.07710 1.14422 1.43478 1.22086 0.87195 0.96675 1.00435 1.22728 0.98422 0.97807 0.82617 1.88003 1.77770 1.36711 1.26766 1.22874 0.92996 0.85878 0.94631 0.90392 1.22911 0.97470 0.99323 0.96429 1.21724 0.84464 0.91299 0.99443 1.44706 1.17400 1.51364 1.21801 1.19438 0.96652 1.21988 0.99206 0.90224 1.25691 1.00122 0.99193 1.00960 1.70037 1.25922 1.32784 1.31157 0.85065 0.78066 0.77448 0.78199 1.21682 1.20315 1.20251 1.21848 0.96649 0.94221 0.88347 1.22145 0.94485 0.88991 1.01087 1.22173 0.94553 0.98935 0.91380 0.90363 0.90378 0.96064 0.95502 0.88936 0.90172 0.93672 0.91086 0.90413 0.92704 0.92446 0.92275 0.89580 0.90607 0.98702 0.94160 0.95593 0.95753 0.93713 0.90225 0.95523 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.60 127.69 1.23 1.58 16 2 N -0.55 -9.97 4.97 -921.94 -4.58 -14.55 16 3 C 0.06 1.07 5.62 86.31 0.49 1.56 16 4 C 0.06 1.11 5.43 86.31 0.47 1.58 16 5 N -0.55 -12.21 4.59 -895.71 -4.11 -16.32 16 6 C 0.06 1.33 5.39 86.30 0.46 1.79 16 7 C 0.06 1.51 5.97 71.98 0.43 1.94 16 8 O -0.37 -12.64 10.02 -148.98 -1.49 -14.14 16 9 C 0.09 3.54 3.44 31.79 0.11 3.65 16 10 H 0.08 2.62 7.82 -2.39 -0.02 2.60 16 11 C -0.12 -5.05 6.81 31.99 0.22 -4.83 16 12 C 0.16 8.07 5.89 86.85 0.51 8.58 16 13 N -0.63 -34.19 3.39 -691.97 -2.35 -36.53 16 14 C -0.24 -14.27 10.27 84.03 0.86 -13.41 16 15 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 16 C -0.07 -3.92 5.49 84.86 0.47 -3.45 16 17 N -0.95 -57.88 10.09 21.65 0.22 -57.66 16 18 Si 0.98 46.54 29.55 68.60 2.03 48.57 16 19 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 C 0.12 5.14 7.03 86.73 0.61 5.75 16 23 C 0.06 1.18 5.57 86.31 0.48 1.66 16 24 C 0.06 1.07 5.62 86.31 0.49 1.56 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.93 8.13 -2.39 -0.02 0.91 16 27 H 0.02 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 1.50 6.72 -2.39 -0.02 1.48 16 31 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.07 1.16 8.00 -2.39 -0.02 1.14 16 33 H 0.08 1.69 7.85 -2.38 -0.02 1.67 16 34 H 0.05 1.24 6.71 -2.38 -0.02 1.22 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.09 3.06 8.14 -2.38 -0.02 3.04 16 38 H 0.08 4.45 5.87 -2.39 -0.01 4.43 16 39 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 40 H 0.25 14.65 8.31 -92.70 -0.77 13.88 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.02 1.12 8.06 -2.38 -0.02 1.10 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 1.53 8.00 -2.39 -0.02 1.51 16 45 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 46 H 0.09 1.40 8.13 -2.39 -0.02 1.38 16 Total: -1.00 -68.18 355.16 -2.55 -70.74 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.91 Total: 11.95 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: 6.82 Total: 7.94 kcal Atomic # 7 Polarization: -114.24 SS G_CDS: -10.82 Total: -125.06 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -1.49 Total: -14.14 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -68.18 -2.55 -70.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224548568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.465 kcal (2) G-P(sol) polarization free energy of solvation -68.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds