Wall clock time and date at job start Wed Apr 15 2020 11:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46952 * 111.00663 * 2 1 4 4 C 1.53043 * 109.36847 * 183.18591 * 3 2 1 5 5 N 1.46953 * 109.36534 * 301.60031 * 4 3 2 6 6 C 1.46902 * 111.00042 * 183.18694 * 5 4 3 7 7 C 1.53005 * 109.47151 * 75.77644 * 6 5 4 8 8 O 1.42903 * 109.46783 * 65.05698 * 7 6 5 9 9 C 1.42900 * 113.99529 * 179.97438 * 8 7 6 10 10 C 1.53507 * 114.16776 * 209.99912 * 9 8 7 11 11 N 1.47480 * 87.93283 * 220.33012 * 10 9 8 12 12 C 1.46909 * 111.00035 * 138.70434 * 11 10 9 13 13 C 1.50702 * 109.47080 * 170.00128 * 12 11 10 14 14 H 1.08009 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99947 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99918 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99870 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47186 * 60.00368 * 17 15 13 19 19 H 1.48501 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47349 * 300.00154 * 17 15 13 21 21 C 1.47473 * 87.83652 * 27.01172 * 11 10 9 22 22 C 1.46957 * 110.88303 * 59.31948 * 5 4 3 23 23 C 1.46963 * 110.99774 * 123.79980 * 2 1 3 24 24 H 1.09000 * 109.47221 * 59.99508 * 1 2 3 25 25 H 1.08999 * 109.47646 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47353 * 299.99988 * 1 2 3 27 27 H 1.09003 * 109.48398 * 63.21971 * 3 2 1 28 28 H 1.08995 * 109.50259 * 303.16943 * 3 2 1 29 29 H 1.08998 * 109.48943 * 181.62918 * 4 3 2 30 30 H 1.08999 * 109.48784 * 61.56500 * 4 3 2 31 31 H 1.08996 * 109.47231 * 315.77723 * 6 5 4 32 32 H 1.09002 * 109.47517 * 195.77899 * 6 5 4 33 33 H 1.09000 * 109.46937 * 305.05467 * 7 6 5 34 34 H 1.08999 * 109.46584 * 185.05557 * 7 6 5 35 35 H 1.09002 * 113.25972 * 342.94980 * 9 8 7 36 36 H 1.08996 * 113.47913 * 105.56558 * 10 9 8 37 37 H 1.09003 * 113.53714 * 335.10472 * 10 9 8 38 38 H 1.08999 * 109.47144 * 50.00250 * 12 11 10 39 39 H 1.08999 * 109.46813 * 290.00077 * 12 11 10 40 40 H 0.97003 * 120.00045 * 180.02562 * 16 15 13 41 41 H 1.09007 * 113.47845 * 87.75205 * 21 11 10 42 42 H 1.08995 * 113.48009 * 218.22436 * 21 11 10 43 43 H 1.09003 * 109.48506 * 60.64543 * 22 5 4 44 44 H 1.08997 * 109.48977 * 180.70978 * 22 5 4 45 45 H 1.08999 * 109.48763 * 296.77646 * 23 2 1 46 46 H 1.09004 * 109.48948 * 56.82133 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3289 -0.0802 5 7 4.0500 0.5657 1.0598 6 6 5.5190 0.5656 1.0599 7 6 6.0291 1.9247 1.5432 8 8 5.6522 2.1169 2.9082 9 6 6.0827 3.3628 3.4600 10 6 6.3577 3.3199 4.9697 11 7 5.7212 4.6466 5.0692 12 6 4.8597 4.7295 6.2562 13 6 4.4244 6.1575 6.4622 14 1 4.7544 6.9265 5.7793 15 6 3.6041 6.4821 7.5217 16 7 3.2019 5.5457 8.3529 17 14 3.0639 8.2520 7.7766 18 1 2.3103 8.7162 6.5841 19 1 2.1922 8.3357 8.9758 20 1 4.2593 9.1112 7.9720 21 6 4.9367 4.2982 3.8700 22 6 3.5233 -0.8063 1.0599 23 6 1.9955 -0.7633 1.1401 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6938 1.8772 0.9174 28 1 1.6014 1.9131 -0.8600 29 1 3.9178 2.3446 -0.0512 30 1 3.8253 0.8477 -1.0105 31 1 5.8824 0.3797 0.0492 32 1 5.8824 -0.2168 1.7262 33 1 5.5938 2.7147 0.9313 34 1 7.1153 1.9561 1.4583 35 1 6.8682 3.8434 2.8768 36 1 7.4189 3.3277 5.2182 37 1 5.8088 2.5349 5.4900 38 1 5.4130 4.3885 7.1313 39 1 3.9821 4.0992 6.1129 40 1 2.6245 5.7740 9.0981 41 1 4.0080 3.7740 4.0958 42 1 4.7936 5.1350 3.1865 43 1 3.8252 -1.3117 0.1425 44 1 3.9176 -1.3472 1.9201 45 1 1.6937 -0.2821 2.0704 46 1 1.6008 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224549416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:59 Heat of formation + Delta-G solvation = 12.179727 kcal Electronic energy + Delta-G solvation = -22821.375158 eV Core-core repulsion = 19554.643285 eV Total energy + Delta-G solvation = -3266.731873 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.63597 -39.25745 -36.85171 -35.28268 -32.79869 -31.15885 -30.49025 -28.92301 -27.15160 -25.30227 -24.87889 -24.08636 -23.63957 -21.74973 -21.44418 -19.93290 -19.29961 -16.92402 -16.62902 -16.14888 -15.56628 -15.27035 -15.20228 -14.99766 -14.84246 -14.58969 -14.28139 -14.09060 -13.61220 -13.18045 -12.82240 -12.70052 -12.49155 -12.18531 -12.03990 -11.94853 -11.67607 -11.45688 -11.41632 -11.18617 -11.13632 -10.90954 -10.71071 -10.63446 -10.50661 -10.11876 -9.68830 -9.18157 -8.98402 -8.62051 -8.39242 -8.36887 -7.85079 -5.99331 -4.00572 3.36277 3.39468 3.43058 3.66222 3.73717 3.88748 4.46559 4.66848 4.77980 4.86038 4.97789 5.04516 5.05836 5.11721 5.18541 5.25100 5.27894 5.32576 5.35718 5.37157 5.38708 5.40923 5.49310 5.61532 5.63350 5.71625 5.79281 5.80391 5.89116 6.00611 6.17843 6.25797 6.42573 6.49676 6.67473 6.71959 6.75240 6.96687 6.97469 7.26573 7.61287 7.70380 7.90642 8.15692 8.50388 9.06322 9.63029 11.11809 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.003453 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.782367 B = 8106.704981 C = 9123.272129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.055 3.945 4 C 0.057 3.943 5 N -0.530 5.530 6 C 0.058 3.942 7 C 0.068 3.932 8 O -0.359 6.359 9 C 0.051 3.949 10 C -0.002 4.002 11 N -0.466 5.466 12 C 0.162 3.838 13 C -0.505 4.505 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.276 1.276 21 C -0.002 4.002 22 C 0.060 3.940 23 C 0.055 3.945 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.566 -13.463 -19.004 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.073 4.073 4 C -0.071 4.071 5 N -0.255 5.255 6 C -0.070 4.070 7 C -0.010 4.010 8 O -0.276 6.276 9 C -0.007 4.007 10 C -0.132 4.132 11 N -0.190 5.190 12 C 0.036 3.964 13 C -0.544 4.544 14 H 0.080 0.920 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.131 4.131 22 C -0.068 4.068 23 C -0.073 4.073 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.056 0.944 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.733 -13.009 -18.669 22.767 hybrid contribution -0.846 0.447 0.255 0.990 sum -0.113 -12.562 -18.414 22.291 Atomic orbital electron populations 1.22340 0.87205 1.01970 1.00861 1.62197 1.07885 1.14191 1.42945 1.22167 0.94539 0.89223 1.01383 1.22190 0.94472 0.98905 0.91521 1.62033 1.07200 1.13556 1.42670 1.22124 0.87495 0.97878 0.99456 1.22475 0.97348 0.96531 0.84613 1.88050 1.77950 1.37065 1.24559 1.23959 0.97326 0.84933 0.94491 1.24023 1.00965 0.94322 0.93862 1.68932 1.21869 1.23429 1.04792 1.20243 0.90719 0.97848 0.87587 1.21072 1.28746 0.93396 1.11143 0.91952 1.25004 0.96221 0.97610 0.95885 1.69952 1.35523 1.32655 1.15851 0.86531 0.78528 0.84758 0.77414 1.20280 1.21339 1.20149 1.24194 0.96595 0.97160 0.95162 1.22143 0.94406 0.89473 1.00786 1.22179 0.94588 0.98288 0.92279 0.91421 0.91463 0.95321 0.93431 0.90414 0.90122 0.94327 0.93374 0.89986 0.93543 0.93306 0.89276 0.90601 0.91368 0.95339 0.97730 0.92880 0.91095 0.90978 0.94370 0.90123 0.93524 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.60 60.06 0.58 0.79 16 2 N -0.55 -5.65 4.97 -242.76 -1.21 -6.85 16 3 C 0.06 0.58 5.62 -3.77 -0.02 0.56 16 4 C 0.06 0.60 5.43 -3.77 -0.02 0.58 16 5 N -0.53 -6.13 4.59 -234.47 -1.08 -7.20 16 6 C 0.06 0.60 5.39 -3.82 -0.02 0.58 16 7 C 0.07 0.79 5.97 37.16 0.22 1.02 16 8 O -0.36 -5.66 10.34 -35.23 -0.36 -6.03 16 9 C 0.05 0.86 4.66 -26.20 -0.12 0.73 16 10 C 0.00 -0.04 7.52 -7.55 -0.06 -0.10 16 11 N -0.47 -10.69 6.32 -246.13 -1.55 -12.24 16 12 C 0.16 4.44 4.57 -4.97 -0.02 4.42 16 13 C -0.50 -14.88 9.39 -34.44 -0.32 -15.20 16 14 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 17 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.00 -0.03 7.55 -7.55 -0.06 -0.09 16 22 C 0.06 0.61 5.57 -3.77 -0.02 0.59 16 23 C 0.05 0.56 5.62 -3.76 -0.02 0.54 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 26 H 0.03 0.26 8.14 -51.92 -0.42 -0.16 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.08 0.83 6.72 -51.93 -0.35 0.48 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.41 8.00 -51.93 -0.42 0.00 16 32 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 33 H 0.05 0.53 6.74 -51.93 -0.35 0.18 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 1.32 7.88 -51.93 -0.41 0.91 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.07 1.37 7.91 -51.93 -0.41 0.96 16 38 H 0.03 0.83 8.08 -51.93 -0.42 0.41 16 39 H 0.00 0.14 7.30 -51.93 -0.38 -0.24 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.07 1.54 7.42 -51.93 -0.39 1.16 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.78 8.00 -51.93 -0.42 0.37 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -32.22 362.38 -11.57 -43.79 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.56 Total: -3.26 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 0.02 Total: -4.10 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -3.10 Total: -53.07 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.36 Total: -6.03 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.22 -11.57 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224549416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.965 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds