Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46952 * 111.00663 * 2 1 4 4 C 1.53043 * 109.36847 * 183.18591 * 3 2 1 5 5 N 1.46953 * 109.36534 * 301.60031 * 4 3 2 6 6 C 1.46902 * 111.00042 * 183.18694 * 5 4 3 7 7 C 1.53005 * 109.47151 * 75.77644 * 6 5 4 8 8 O 1.42903 * 109.46783 * 65.05698 * 7 6 5 9 9 C 1.42900 * 113.99529 * 179.97438 * 8 7 6 10 10 C 1.53507 * 114.16776 * 209.99912 * 9 8 7 11 11 N 1.47480 * 87.93283 * 220.33012 * 10 9 8 12 12 C 1.46909 * 111.00035 * 138.70434 * 11 10 9 13 13 C 1.50702 * 109.47080 * 170.00128 * 12 11 10 14 14 H 1.08009 * 119.99901 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99947 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99918 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99870 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47186 * 60.00368 * 17 15 13 19 19 H 1.48501 * 109.47154 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47349 * 300.00154 * 17 15 13 21 21 C 1.47473 * 87.83652 * 27.01172 * 11 10 9 22 22 C 1.46957 * 110.88303 * 59.31948 * 5 4 3 23 23 C 1.46963 * 110.99774 * 123.79980 * 2 1 3 24 24 H 1.09000 * 109.47221 * 59.99508 * 1 2 3 25 25 H 1.08999 * 109.47646 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47353 * 299.99988 * 1 2 3 27 27 H 1.09003 * 109.48398 * 63.21971 * 3 2 1 28 28 H 1.08995 * 109.50259 * 303.16943 * 3 2 1 29 29 H 1.08998 * 109.48943 * 181.62918 * 4 3 2 30 30 H 1.08999 * 109.48784 * 61.56500 * 4 3 2 31 31 H 1.08996 * 109.47231 * 315.77723 * 6 5 4 32 32 H 1.09002 * 109.47517 * 195.77899 * 6 5 4 33 33 H 1.09000 * 109.46937 * 305.05467 * 7 6 5 34 34 H 1.08999 * 109.46584 * 185.05557 * 7 6 5 35 35 H 1.09002 * 113.25972 * 342.94980 * 9 8 7 36 36 H 1.08996 * 113.47913 * 105.56558 * 10 9 8 37 37 H 1.09003 * 113.53714 * 335.10472 * 10 9 8 38 38 H 1.08999 * 109.47144 * 50.00250 * 12 11 10 39 39 H 1.08999 * 109.46813 * 290.00077 * 12 11 10 40 40 H 0.97003 * 120.00045 * 180.02562 * 16 15 13 41 41 H 1.09007 * 113.47845 * 87.75205 * 21 11 10 42 42 H 1.08995 * 113.48009 * 218.22436 * 21 11 10 43 43 H 1.09003 * 109.48506 * 60.64543 * 22 5 4 44 44 H 1.08997 * 109.48977 * 180.70978 * 22 5 4 45 45 H 1.08999 * 109.48763 * 296.77646 * 23 2 1 46 46 H 1.09004 * 109.48948 * 56.82133 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5234 1.3289 -0.0802 5 7 4.0500 0.5657 1.0598 6 6 5.5190 0.5656 1.0599 7 6 6.0291 1.9247 1.5432 8 8 5.6522 2.1169 2.9082 9 6 6.0827 3.3628 3.4600 10 6 6.3577 3.3199 4.9697 11 7 5.7212 4.6466 5.0692 12 6 4.8597 4.7295 6.2562 13 6 4.4244 6.1575 6.4622 14 1 4.7544 6.9265 5.7793 15 6 3.6041 6.4821 7.5217 16 7 3.2019 5.5457 8.3529 17 14 3.0639 8.2520 7.7766 18 1 2.3103 8.7162 6.5841 19 1 2.1922 8.3357 8.9758 20 1 4.2593 9.1112 7.9720 21 6 4.9367 4.2982 3.8700 22 6 3.5233 -0.8063 1.0599 23 6 1.9955 -0.7633 1.1401 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6938 1.8772 0.9174 28 1 1.6014 1.9131 -0.8600 29 1 3.9178 2.3446 -0.0512 30 1 3.8253 0.8477 -1.0105 31 1 5.8824 0.3797 0.0492 32 1 5.8824 -0.2168 1.7262 33 1 5.5938 2.7147 0.9313 34 1 7.1153 1.9561 1.4583 35 1 6.8682 3.8434 2.8768 36 1 7.4189 3.3277 5.2182 37 1 5.8088 2.5349 5.4900 38 1 5.4130 4.3885 7.1313 39 1 3.9821 4.0992 6.1129 40 1 2.6245 5.7740 9.0981 41 1 4.0080 3.7740 4.0958 42 1 4.7936 5.1350 3.1865 43 1 3.8252 -1.3117 0.1425 44 1 3.9176 -1.3472 1.9201 45 1 1.6937 -0.2821 2.0704 46 1 1.6008 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224549416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = -14.090323 kcal Electronic energy + Delta-G solvation = -22822.514313 eV Core-core repulsion = 19554.643285 eV Total energy + Delta-G solvation = -3267.871028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.03316 -40.25597 -38.02551 -36.25489 -34.99409 -31.99001 -31.59803 -30.64441 -28.07455 -27.03913 -26.67782 -24.90170 -24.45587 -23.46058 -22.55420 -20.89195 -20.75231 -18.66534 -17.96603 -17.45536 -16.95606 -16.38445 -16.33806 -16.09966 -15.90289 -15.81951 -15.44153 -15.31612 -15.02270 -14.43009 -14.16523 -14.14744 -13.66318 -13.46986 -13.31286 -13.15179 -12.93060 -12.83536 -12.64052 -12.49510 -12.31968 -12.24825 -12.11061 -12.02973 -11.69898 -11.59428 -11.49823 -11.21454 -10.63779 -10.28228 -9.75424 -9.45389 -9.17839 -8.24708 -6.36288 1.38476 1.42902 1.51090 2.37707 2.69020 2.89403 2.96888 3.07137 3.43041 3.52939 3.88070 3.93289 4.04555 4.07950 4.23251 4.27833 4.34344 4.38188 4.43078 4.52501 4.53102 4.58081 4.59733 4.64436 4.67123 4.71090 4.73288 4.82035 4.87273 4.87958 4.92448 4.96432 4.98363 5.00235 5.06314 5.07673 5.53883 5.73056 5.93653 5.94288 6.04187 6.16445 6.17216 6.39237 6.46383 6.77467 7.33373 8.86771 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.003453 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.782367 B = 8106.704981 C = 9123.272129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.055 3.945 4 C 0.061 3.939 5 N -0.556 5.556 6 C 0.061 3.939 7 C 0.060 3.940 8 O -0.377 6.377 9 C 0.086 3.914 10 C -0.007 4.007 11 N -0.479 5.479 12 C 0.178 3.822 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.975 3.025 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.265 1.265 21 C -0.008 4.008 22 C 0.063 3.937 23 C 0.055 3.945 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.017 0.983 27 H 0.020 0.980 28 H 0.092 0.908 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.098 0.902 37 H 0.051 0.949 38 H 0.001 0.999 39 H -0.027 1.027 40 H 0.266 0.734 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.048 0.952 44 H 0.081 0.919 45 H 0.021 0.979 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.377 -13.114 -21.000 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.073 4.073 4 C -0.067 4.067 5 N -0.282 5.282 6 C -0.067 4.067 7 C -0.016 4.016 8 O -0.295 6.295 9 C 0.027 3.973 10 C -0.137 4.137 11 N -0.203 5.203 12 C 0.051 3.949 13 C -0.568 4.568 14 H 0.079 0.921 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.799 3.201 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.190 1.190 21 C -0.138 4.138 22 C -0.065 4.065 23 C -0.073 4.073 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.140 0.860 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.019 0.981 39 H -0.009 1.009 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.039 0.961 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.556 -12.678 -20.690 24.315 hybrid contribution -1.107 0.246 0.830 1.405 sum 0.449 -12.432 -19.861 23.435 Atomic orbital electron populations 1.22406 0.86323 1.02846 1.00845 1.62269 1.08775 1.13832 1.42569 1.22182 0.95103 0.89420 1.00627 1.22162 0.94071 0.98877 0.91608 1.62021 1.08204 1.14390 1.43547 1.22143 0.86795 0.97025 1.00693 1.22791 0.99034 0.97517 0.82290 1.88040 1.78300 1.36067 1.27081 1.23620 0.95674 0.84705 0.93281 1.24086 1.01532 0.91860 0.96173 1.68829 1.21554 1.26101 1.03821 1.19888 0.89820 0.96508 0.88671 1.21402 1.29541 0.94182 1.11688 0.92062 1.26004 0.95878 1.02692 0.95249 1.70087 1.35933 1.35193 1.16348 0.85351 0.78427 0.78573 0.77761 1.19210 1.20484 1.19023 1.24214 0.96770 0.98441 0.94330 1.22125 0.94087 0.89041 1.01249 1.22205 0.95045 0.98899 0.91181 0.90275 0.90173 0.96480 0.96183 0.88951 0.90174 0.93306 0.90877 0.90069 0.93075 0.90784 0.86027 0.88359 0.93090 0.98076 1.00873 0.92520 0.93741 0.90020 0.93384 0.90058 0.96092 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.60 127.69 1.23 1.62 16 2 N -0.55 -10.90 4.97 -921.96 -4.58 -15.48 16 3 C 0.05 1.14 5.62 86.31 0.49 1.63 16 4 C 0.06 1.19 5.43 86.31 0.47 1.66 16 5 N -0.56 -12.25 4.59 -895.73 -4.11 -16.36 16 6 C 0.06 1.12 5.39 86.30 0.46 1.58 16 7 C 0.06 1.25 5.97 71.98 0.43 1.68 16 8 O -0.38 -11.40 10.34 -148.98 -1.54 -12.94 16 9 C 0.09 2.74 4.66 30.94 0.14 2.88 16 10 C -0.01 -0.28 7.52 83.57 0.63 0.35 16 11 N -0.48 -22.35 6.32 -933.00 -5.89 -28.24 16 12 C 0.18 10.20 4.57 85.56 0.39 10.59 16 13 C -0.53 -31.94 9.39 25.60 0.24 -31.70 16 14 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 15 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 16 N -0.94 -58.47 13.29 21.45 0.28 -58.18 16 17 Si 0.98 45.68 29.54 68.60 2.03 47.71 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 C -0.01 -0.33 7.55 83.57 0.63 0.31 16 22 C 0.06 1.22 5.57 86.31 0.48 1.70 16 23 C 0.05 1.11 5.62 86.31 0.49 1.59 16 24 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.10 8.13 -2.39 -0.02 1.08 16 26 H 0.02 0.31 8.14 -2.38 -0.02 0.30 16 27 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.08 1.55 6.72 -2.39 -0.02 1.53 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.00 8.00 -2.39 -0.02 0.98 16 32 H 0.08 1.50 7.84 -2.39 -0.02 1.48 16 33 H 0.05 1.03 6.74 -2.39 -0.02 1.01 16 34 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.12 3.15 7.88 -2.39 -0.02 3.13 16 36 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.05 2.12 7.91 -2.39 -0.02 2.10 16 38 H 0.00 0.07 8.08 -2.39 -0.02 0.05 16 39 H -0.03 -1.64 7.30 -2.39 -0.02 -1.66 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.04 2.03 7.42 -2.38 -0.02 2.02 16 42 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 43 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.08 1.53 8.00 -2.39 -0.02 1.51 16 45 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 Total: -1.00 -71.02 362.38 -6.36 -77.38 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.91 Total: 11.78 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.54 Total: -5.66 kcal Atomic # 7 Polarization: -103.98 SS G_CDS: -14.30 Total: -118.27 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -1.54 Total: -12.94 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -71.02 -6.36 -77.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224549416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.290 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds