Wall clock time and date at job start Wed Apr 15 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99798 * 2 1 4 4 C 1.46897 * 110.99870 * 123.95350 * 2 1 3 5 5 C 1.52995 * 109.47138 * 66.04646 * 4 2 1 6 6 N 1.46500 * 109.47178 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99781 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00154 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.53117 * 109.51970 * 179.97438 * 9 7 6 11 11 C 1.53034 * 109.27588 * 182.37544 * 10 9 7 12 12 N 1.46846 * 109.52689 * 59.17989 * 11 10 9 13 13 C 1.46901 * 111.00467 * 174.16153 * 12 11 10 14 14 C 1.50697 * 109.46972 * 64.94028 * 13 12 11 15 15 H 1.07992 * 120.00221 * 354.70589 * 14 13 12 16 16 C 1.37877 * 119.99867 * 174.98547 * 14 13 12 17 17 N 1.31509 * 120.00517 * 179.72943 * 16 14 13 18 18 Si 1.86812 * 119.99861 * 359.72012 * 16 14 13 19 19 H 1.48504 * 109.46398 * 90.00388 * 18 16 14 20 20 H 1.48497 * 109.47048 * 210.00198 * 18 16 14 21 21 H 1.48496 * 109.46972 * 330.00408 * 18 16 14 22 22 C 1.46846 * 111.19666 * 298.26037 * 12 11 10 23 23 C 1.53043 * 109.52705 * 61.73864 * 22 12 11 24 24 H 1.08997 * 109.46993 * 296.04866 * 1 2 3 25 25 H 1.09006 * 109.47041 * 56.04340 * 1 2 3 26 26 H 1.08995 * 109.47067 * 176.04608 * 1 2 3 27 27 H 1.08999 * 109.46917 * 183.95355 * 3 2 1 28 28 H 1.09000 * 109.46938 * 303.95217 * 3 2 1 29 29 H 1.08993 * 109.46979 * 63.95641 * 3 2 1 30 30 H 1.09003 * 109.47229 * 306.04248 * 4 2 1 31 31 H 1.09002 * 109.47254 * 186.04507 * 4 2 1 32 32 H 1.09003 * 109.47385 * 59.99698 * 5 4 2 33 33 H 1.08998 * 109.47388 * 300.00227 * 5 4 2 34 34 H 0.96996 * 120.00128 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.52047 * 300.12343 * 9 7 6 36 36 H 1.09002 * 109.50148 * 62.43599 * 10 9 7 37 37 H 1.08998 * 109.50646 * 302.31875 * 10 9 7 38 38 H 1.09006 * 109.46434 * 299.16588 * 11 10 9 39 39 H 1.09003 * 109.45468 * 179.19093 * 11 10 9 40 40 H 1.09003 * 109.47020 * 304.94382 * 13 12 11 41 41 H 1.08998 * 109.46818 * 184.94223 * 13 12 11 42 42 H 0.97003 * 120.00586 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.46431 * 181.75597 * 22 12 11 44 44 H 1.09001 * 109.46282 * 301.72122 * 22 12 11 45 45 H 1.08994 * 109.50185 * 180.87989 * 23 22 12 46 46 H 1.08996 * 109.49882 * 60.75716 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2425 0.9703 6 7 2.1569 -3.0065 2.1045 7 6 1.9556 -4.3375 2.1716 8 8 1.3391 -4.9026 1.2934 9 6 2.4957 -5.1233 3.3387 10 6 2.1311 -6.6012 3.1730 11 6 2.6303 -7.3842 4.3894 12 7 2.0146 -6.8432 5.6079 13 6 2.3628 -7.6575 6.7799 14 6 3.8462 -7.5691 7.0302 15 1 4.4804 -7.0389 6.3353 16 6 4.3944 -8.1701 8.1434 17 7 5.6897 -8.0975 8.3592 18 14 3.2973 -9.0872 9.3455 19 1 3.1942 -10.5105 8.9345 20 1 3.8807 -9.0066 10.7087 21 1 1.9451 -8.4736 9.3487 22 6 2.3890 -5.4382 5.8132 23 6 1.8825 -4.5970 4.6393 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5741 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0451 33 1 0.5472 -2.3475 0.9322 34 1 2.6491 -2.5544 2.8075 35 1 3.5798 -5.0175 3.3785 36 1 2.6003 -6.9928 2.2705 37 1 1.0486 -6.7024 3.0943 38 1 3.7144 -7.2939 4.4596 39 1 2.3596 -8.4345 4.2812 40 1 2.0866 -8.6958 6.5960 41 1 1.8243 -7.2873 7.6524 42 1 6.0755 -8.5207 9.1422 43 1 1.9431 -5.0751 6.7392 44 1 3.4741 -5.3571 5.8766 45 1 2.1741 -3.5569 4.7844 46 1 0.7962 -4.6668 4.5837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049754043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:04 Heat of formation + Delta-G solvation = -36.429474 kcal Electronic energy + Delta-G solvation = -22650.092413 eV Core-core repulsion = 19381.252687 eV Total energy + Delta-G solvation = -3268.839727 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.07408 -38.23537 -37.59367 -34.71169 -33.70655 -32.00109 -30.36525 -29.65174 -28.00277 -27.54446 -25.02037 -23.75213 -22.49270 -21.59619 -21.47100 -20.17598 -19.12211 -17.04308 -16.85309 -16.49691 -16.14453 -15.30233 -15.17442 -14.97502 -14.62462 -14.29226 -14.09861 -13.87249 -13.72166 -13.11662 -12.83778 -12.77282 -12.71469 -12.29782 -12.23200 -12.15198 -11.89550 -11.83451 -11.46152 -11.26509 -11.05185 -10.92087 -10.63838 -10.42563 -10.16921 -9.99040 -9.85190 -9.59183 -9.39873 -9.12486 -8.83711 -8.61912 -7.20060 -6.12882 -4.12802 2.74480 2.96023 3.26820 3.34389 3.38024 3.74897 4.37909 4.46764 4.65427 4.77818 4.79999 4.91114 4.94773 5.06960 5.10106 5.16995 5.19264 5.20677 5.23052 5.45269 5.49223 5.56453 5.63314 5.73620 5.75144 5.96021 6.03274 6.08652 6.27146 6.31508 6.34572 6.45820 6.53495 6.56358 6.60781 6.73424 6.87236 6.96881 7.06886 7.45079 7.54823 8.04817 8.12249 8.27446 8.42430 8.88996 9.50279 10.99943 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.002847 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.239551 B = 9831.373276 C =10131.504867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.544 5.544 3 C 0.025 3.975 4 C 0.043 3.957 5 C 0.122 3.878 6 N -0.736 5.736 7 C 0.523 3.477 8 O -0.540 6.540 9 C -0.106 4.106 10 C -0.093 4.093 11 C 0.060 3.940 12 N -0.535 5.535 13 C 0.151 3.849 14 C -0.550 4.550 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.263 1.263 22 C 0.064 3.936 23 C -0.104 4.104 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.400 0.600 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.031 0.969 42 H 0.263 0.737 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.785 16.812 -13.256 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.269 5.269 3 C -0.123 4.123 4 C -0.086 4.086 5 C -0.002 4.002 6 N -0.389 5.389 7 C 0.310 3.690 8 O -0.416 6.416 9 C -0.127 4.127 10 C -0.132 4.132 11 C -0.068 4.068 12 N -0.259 5.259 13 C 0.025 3.975 14 C -0.589 4.589 15 H 0.093 0.907 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.187 1.187 22 C -0.064 4.064 23 C -0.142 4.142 24 H 0.046 0.954 25 H 0.088 0.912 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.458 16.103 -14.275 23.122 hybrid contribution 0.556 0.224 1.938 2.029 sum -7.902 16.327 -12.336 21.936 Atomic orbital electron populations 1.22509 0.86989 1.02882 1.00681 1.61863 1.08390 1.14061 1.42541 1.22397 1.00936 0.88316 1.00695 1.22293 1.00927 0.93268 0.92078 1.21227 0.99404 0.89621 0.89977 1.45978 1.58770 1.08373 1.25786 1.20916 0.79003 0.81575 0.87498 1.90673 1.40685 1.69694 1.40542 1.21426 1.01524 0.96810 0.92946 1.21436 1.02262 0.91585 0.97870 1.21929 0.97678 0.98022 0.89183 1.62376 1.57732 1.01959 1.03833 1.20209 0.95507 0.93023 0.88783 1.21695 0.92326 1.35459 1.09419 0.90743 1.24977 0.94825 0.95616 0.97682 1.69923 1.10895 1.44562 1.28433 0.86803 0.81455 0.80651 0.80542 1.20185 1.21351 1.18744 1.21845 0.99407 0.89138 0.96054 1.21622 1.01060 0.98280 0.93281 0.95393 0.91155 0.90747 0.91140 0.91101 0.95484 0.93995 0.89982 0.90732 0.91584 0.76577 0.88760 0.91725 0.91012 0.93897 0.91335 0.95746 0.95093 0.92686 0.91359 0.93451 0.92133 0.91292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.32 60.07 0.56 0.68 16 2 N -0.54 -4.27 5.02 -251.26 -1.26 -5.53 16 3 C 0.02 0.15 9.57 60.07 0.57 0.72 16 4 C 0.04 0.33 5.07 -3.83 -0.02 0.31 16 5 C 0.12 1.21 5.60 -4.04 -0.02 1.18 16 6 N -0.74 -7.79 5.46 -60.29 -0.33 -8.12 16 7 C 0.52 7.40 7.16 -10.98 -0.08 7.32 16 8 O -0.54 -9.56 15.98 5.56 0.09 -9.47 16 9 C -0.11 -1.52 2.59 -91.65 -0.24 -1.76 16 10 C -0.09 -1.53 4.68 -26.65 -0.12 -1.65 16 11 C 0.06 1.15 5.12 -3.84 -0.02 1.13 16 12 N -0.54 -10.93 4.86 -236.11 -1.15 -12.07 16 13 C 0.15 3.58 4.22 -4.98 -0.02 3.56 16 14 C -0.55 -14.95 8.27 -34.44 -0.28 -15.24 16 15 H 0.07 2.18 6.11 -52.49 -0.32 1.86 16 16 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 17 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 18 Si 0.88 21.16 27.57 -169.99 -4.69 16.47 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.26 -6.09 6.40 56.52 0.36 -5.73 16 22 C 0.06 1.17 5.03 -3.83 -0.02 1.15 16 23 C -0.10 -1.47 5.26 -26.65 -0.14 -1.61 16 24 H 0.03 0.19 8.14 -51.93 -0.42 -0.24 16 25 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.07 0.56 6.47 -51.93 -0.34 0.22 16 27 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 28 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.30 8.12 -51.93 -0.42 -0.12 16 31 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.71 6.55 -51.93 -0.34 0.37 16 34 H 0.40 3.28 7.96 -40.82 -0.32 2.96 16 35 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 38 H 0.04 0.90 6.86 -51.93 -0.36 0.54 16 39 H 0.07 1.31 8.08 -51.93 -0.42 0.89 16 40 H 0.02 0.58 7.77 -51.93 -0.40 0.18 16 41 H 0.03 0.74 6.84 -51.93 -0.35 0.39 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.05 0.96 6.73 -51.93 -0.35 0.61 16 45 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 355.71 15.07 5.36 5.36 Total: -1.00 -31.91 355.71 -9.39 -41.31 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -8.26 Total: 0.56 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 0.07 Total: -2.27 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -1.96 Total: -51.95 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.47 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.69 Total: 16.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.91 -9.39 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.876 kcal (2) G-P(sol) polarization free energy of solvation -31.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds