Wall clock time and date at job start Wed Apr 15 2020 11:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46907 * 110.99798 * 2 1 4 4 C 1.46897 * 110.99870 * 123.95350 * 2 1 3 5 5 C 1.52995 * 109.47138 * 66.04646 * 4 2 1 6 6 N 1.46500 * 109.47178 * 179.97438 * 5 4 2 7 7 C 1.34780 * 119.99781 * 179.97438 * 6 5 4 8 8 O 1.21277 * 120.00154 * 359.97438 * 7 6 5 9 9 C 1.50707 * 119.99670 * 180.02562 * 7 6 5 10 10 C 1.53117 * 109.51970 * 179.97438 * 9 7 6 11 11 C 1.53034 * 109.27588 * 182.37544 * 10 9 7 12 12 N 1.46846 * 109.52689 * 59.17989 * 11 10 9 13 13 C 1.46901 * 111.00467 * 174.16153 * 12 11 10 14 14 C 1.50697 * 109.46972 * 64.94028 * 13 12 11 15 15 H 1.07992 * 120.00221 * 354.70589 * 14 13 12 16 16 C 1.37877 * 119.99867 * 174.98547 * 14 13 12 17 17 N 1.31509 * 120.00517 * 179.72943 * 16 14 13 18 18 Si 1.86812 * 119.99861 * 359.72012 * 16 14 13 19 19 H 1.48504 * 109.46398 * 90.00388 * 18 16 14 20 20 H 1.48497 * 109.47048 * 210.00198 * 18 16 14 21 21 H 1.48496 * 109.46972 * 330.00408 * 18 16 14 22 22 C 1.46846 * 111.19666 * 298.26037 * 12 11 10 23 23 C 1.53043 * 109.52705 * 61.73864 * 22 12 11 24 24 H 1.08997 * 109.46993 * 296.04866 * 1 2 3 25 25 H 1.09006 * 109.47041 * 56.04340 * 1 2 3 26 26 H 1.08995 * 109.47067 * 176.04608 * 1 2 3 27 27 H 1.08999 * 109.46917 * 183.95355 * 3 2 1 28 28 H 1.09000 * 109.46938 * 303.95217 * 3 2 1 29 29 H 1.08993 * 109.46979 * 63.95641 * 3 2 1 30 30 H 1.09003 * 109.47229 * 306.04248 * 4 2 1 31 31 H 1.09002 * 109.47254 * 186.04507 * 4 2 1 32 32 H 1.09003 * 109.47385 * 59.99698 * 5 4 2 33 33 H 1.08998 * 109.47388 * 300.00227 * 5 4 2 34 34 H 0.96996 * 120.00128 * 0.02562 * 6 5 4 35 35 H 1.08997 * 109.52047 * 300.12343 * 9 7 6 36 36 H 1.09002 * 109.50148 * 62.43599 * 10 9 7 37 37 H 1.08998 * 109.50646 * 302.31875 * 10 9 7 38 38 H 1.09006 * 109.46434 * 299.16588 * 11 10 9 39 39 H 1.09003 * 109.45468 * 179.19093 * 11 10 9 40 40 H 1.09003 * 109.47020 * 304.94382 * 13 12 11 41 41 H 1.08998 * 109.46818 * 184.94223 * 13 12 11 42 42 H 0.97003 * 120.00586 * 180.02562 * 17 16 14 43 43 H 1.08998 * 109.46431 * 181.75597 * 22 12 11 44 44 H 1.09001 * 109.46282 * 301.72122 * 22 12 11 45 45 H 1.08994 * 109.50185 * 180.87989 * 23 22 12 46 46 H 1.08996 * 109.49882 * 60.75716 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2425 0.9703 6 7 2.1569 -3.0065 2.1045 7 6 1.9556 -4.3375 2.1716 8 8 1.3391 -4.9026 1.2934 9 6 2.4957 -5.1233 3.3387 10 6 2.1311 -6.6012 3.1730 11 6 2.6303 -7.3842 4.3894 12 7 2.0146 -6.8432 5.6079 13 6 2.3628 -7.6575 6.7799 14 6 3.8462 -7.5691 7.0302 15 1 4.4804 -7.0389 6.3353 16 6 4.3944 -8.1701 8.1434 17 7 5.6897 -8.0975 8.3592 18 14 3.2973 -9.0872 9.3455 19 1 3.1942 -10.5105 8.9345 20 1 3.8807 -9.0066 10.7087 21 1 1.9451 -8.4736 9.3487 22 6 2.3890 -5.4382 5.8132 23 6 1.8825 -4.5970 4.6393 24 1 -0.3633 0.4513 0.9233 25 1 -0.3633 0.5741 -0.8525 26 1 -0.3633 -1.0252 -0.0709 27 1 3.0828 1.3433 -0.0709 28 1 1.5898 1.9164 -0.8525 29 1 1.7044 1.8723 0.9233 30 1 1.5611 -0.3872 2.0628 31 1 3.0797 -0.6611 1.1756 32 1 2.0657 -2.6213 0.0451 33 1 0.5472 -2.3475 0.9322 34 1 2.6491 -2.5544 2.8075 35 1 3.5798 -5.0175 3.3785 36 1 2.6003 -6.9928 2.2705 37 1 1.0486 -6.7024 3.0943 38 1 3.7144 -7.2939 4.4596 39 1 2.3596 -8.4345 4.2812 40 1 2.0866 -8.6958 6.5960 41 1 1.8243 -7.2873 7.6524 42 1 6.0755 -8.5207 9.1422 43 1 1.9431 -5.0751 6.7392 44 1 3.4741 -5.3571 5.8766 45 1 2.1741 -3.5569 4.7844 46 1 0.7962 -4.6668 4.5837 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049754043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:04 Heat of formation + Delta-G solvation = -61.389483 kcal Electronic energy + Delta-G solvation = -22651.174761 eV Core-core repulsion = 19381.252687 eV Total energy + Delta-G solvation = -3269.922074 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.25026 -39.40031 -38.53507 -35.67817 -35.41517 -33.88843 -31.74505 -30.60150 -29.26169 -28.49995 -26.31602 -24.84099 -23.89611 -23.12971 -22.21389 -21.46202 -20.56918 -18.86662 -18.14994 -17.39417 -16.93829 -16.73516 -15.99158 -15.98097 -15.85710 -15.80997 -15.54334 -14.95473 -14.79435 -14.53613 -14.47253 -14.13060 -13.84954 -13.44015 -13.28260 -12.95421 -12.93182 -12.84882 -12.63516 -12.47098 -12.40516 -12.23522 -12.13414 -12.04444 -11.78184 -11.72223 -11.46912 -11.31633 -10.77889 -10.70704 -10.10339 -9.37699 -8.95496 -8.30045 -6.34702 1.37420 1.38535 1.49971 1.61138 2.06434 2.35189 3.05029 3.11677 3.32382 3.67088 3.80094 3.85408 3.94633 4.03557 4.27825 4.34233 4.34996 4.42022 4.50990 4.57021 4.64910 4.67991 4.70007 4.77303 4.82348 4.87088 4.90932 4.94295 5.03714 5.04925 5.05350 5.05977 5.17079 5.18733 5.27379 5.35303 5.42514 5.56236 5.99086 6.02294 6.12651 6.37136 6.47484 6.51323 6.72112 7.22796 7.32535 8.85764 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.002847 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.239551 B = 9831.373276 C =10131.504867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.561 5.561 3 C 0.025 3.975 4 C 0.051 3.949 5 C 0.126 3.874 6 N -0.717 5.717 7 C 0.528 3.472 8 O -0.578 6.578 9 C -0.103 4.103 10 C -0.084 4.084 11 C 0.064 3.936 12 N -0.534 5.534 13 C 0.157 3.843 14 C -0.546 4.546 15 H 0.039 0.961 16 C 0.011 3.989 17 N -0.947 5.947 18 Si 0.946 3.054 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.245 1.245 22 C 0.063 3.937 23 C -0.091 4.091 24 H 0.032 0.968 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.032 0.968 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.415 0.585 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.017 0.983 39 H 0.064 0.936 40 H 0.025 0.975 41 H 0.035 0.965 42 H 0.265 0.735 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.098 0.902 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 18.280 -13.162 24.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.286 5.286 3 C -0.123 4.123 4 C -0.078 4.078 5 C 0.002 3.998 6 N -0.370 5.370 7 C 0.315 3.685 8 O -0.458 6.458 9 C -0.124 4.124 10 C -0.122 4.122 11 C -0.064 4.064 12 N -0.258 5.258 13 C 0.029 3.971 14 C -0.585 4.585 15 H 0.057 0.943 16 C -0.187 4.187 17 N -0.588 5.588 18 Si 0.770 3.230 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.168 1.168 22 C -0.065 4.065 23 C -0.129 4.129 24 H 0.050 0.950 25 H 0.097 0.903 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.252 0.748 35 H 0.119 0.881 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.040 0.960 45 H 0.116 0.884 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.886 17.624 -14.185 24.689 hybrid contribution 1.059 -0.171 1.826 2.118 sum -8.827 17.453 -12.359 23.136 Atomic orbital electron populations 1.22508 0.86713 1.02497 1.01311 1.61855 1.08840 1.15146 1.42737 1.22432 1.01194 0.87386 1.01272 1.22206 1.01555 0.91462 0.92532 1.21219 0.98747 0.90987 0.88879 1.45810 1.57738 1.07269 1.26217 1.20709 0.78547 0.82497 0.86741 1.90667 1.42601 1.70679 1.41810 1.21352 1.01998 0.95596 0.93458 1.21294 1.01714 0.92814 0.96385 1.21901 0.96074 0.98510 0.89920 1.62414 1.57472 1.02842 1.03036 1.20083 0.92900 0.93755 0.90313 1.21903 0.93940 1.34232 1.08441 0.94251 1.25888 0.96158 0.96766 0.99852 1.70067 1.12981 1.46250 1.29455 0.85727 0.80123 0.79379 0.77806 1.19534 1.21105 1.16801 1.21909 0.97962 0.88416 0.98230 1.21538 1.00908 0.99387 0.91044 0.94963 0.90306 0.91687 0.90719 0.90436 0.94977 0.93016 0.89030 0.92295 0.92344 0.74821 0.88105 0.91377 0.91482 0.96436 0.91711 0.95680 0.94736 0.92580 0.91151 0.96026 0.88406 0.91068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 127.69 1.19 1.41 16 2 N -0.56 -7.74 5.02 -948.85 -4.76 -12.50 16 3 C 0.02 0.25 9.57 127.69 1.22 1.47 16 4 C 0.05 0.66 5.07 86.30 0.44 1.09 16 5 C 0.13 2.29 5.60 86.38 0.48 2.77 16 6 N -0.72 -13.58 5.46 -463.06 -2.53 -16.11 16 7 C 0.53 14.09 7.16 87.66 0.63 14.72 16 8 O -0.58 -20.00 15.98 -3.02 -0.05 -20.05 16 9 C -0.10 -2.80 2.59 -11.46 -0.03 -2.83 16 10 C -0.08 -2.70 4.68 30.64 0.14 -2.56 16 11 C 0.06 2.48 5.12 86.32 0.44 2.92 16 12 N -0.53 -21.57 4.86 -900.92 -4.38 -25.95 16 13 C 0.16 7.35 4.22 85.56 0.36 7.71 16 14 C -0.55 -30.21 8.27 25.60 0.21 -29.99 16 15 H 0.04 2.41 6.11 -2.91 -0.02 2.39 16 16 C 0.01 0.65 5.47 84.66 0.46 1.11 16 17 N -0.95 -58.07 13.96 21.45 0.30 -57.77 16 18 Si 0.95 43.32 27.57 68.60 1.89 45.21 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.24 -10.39 6.40 99.48 0.64 -9.75 16 22 C 0.06 2.24 5.03 86.33 0.43 2.68 16 23 C -0.09 -2.36 5.26 30.65 0.16 -2.20 16 24 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 26 H 0.06 0.92 6.47 -2.39 -0.02 0.90 16 27 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 28 H 0.08 0.66 8.12 -2.39 -0.02 0.64 16 29 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 31 H 0.09 1.02 8.06 -2.39 -0.02 1.00 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.19 6.55 -2.39 -0.02 1.17 16 34 H 0.41 5.48 7.96 -92.71 -0.74 4.74 16 35 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 37 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 38 H 0.02 0.76 6.86 -2.38 -0.02 0.74 16 39 H 0.06 2.49 8.08 -2.39 -0.02 2.47 16 40 H 0.03 1.17 7.77 -2.39 -0.02 1.15 16 41 H 0.03 1.60 6.84 -2.39 -0.02 1.58 16 42 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 44 H 0.02 0.88 6.73 -2.39 -0.02 0.86 16 45 H 0.10 1.84 7.66 -2.39 -0.02 1.83 16 46 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.71 355.71 -3.24 -72.96 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.14 Total: 15.90 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.15 Total: -1.69 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -11.37 Total: -112.32 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.05 Total: -20.05 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.89 Total: 45.21 kcal Total: -69.71 -3.24 -72.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049754043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.566 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds