Wall clock time and date at job start Wed Apr 15 2020 11:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.46901 * 110.99770 * 123.95307 * 2 1 3 5 5 C 1.53002 * 109.47454 * 66.04522 * 4 2 1 6 6 N 1.46893 * 109.47201 * 180.02562 * 5 4 2 7 7 C 1.46945 * 111.00298 * 46.12105 * 6 5 4 8 8 C 1.53095 * 109.34830 * 183.04542 * 7 6 5 9 9 H 1.09000 * 109.61486 * 181.15947 * 8 7 6 10 10 C 1.53133 * 109.29422 * 60.49037 * 8 7 6 11 11 O 1.43007 * 109.24910 * 297.80634 * 10 8 7 12 12 C 1.43016 * 113.79201 * 301.48258 * 11 10 8 13 13 C 1.53135 * 109.23934 * 58.51912 * 12 11 10 14 14 H 1.09001 * 110.03368 * 182.59265 * 13 12 11 15 15 C 1.46955 * 110.99944 * 170.00078 * 6 5 4 16 16 N 1.47114 * 109.10967 * 302.88787 * 13 12 11 17 17 C 1.46903 * 110.99907 * 182.79469 * 16 13 12 18 18 C 1.50694 * 109.47066 * 169.99866 * 17 16 13 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99792 * 179.72330 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99795 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99997 * 22 20 18 25 25 H 1.48507 * 109.47015 * 329.99955 * 22 20 18 26 26 H 1.08998 * 109.47271 * 296.04823 * 1 2 3 27 27 H 1.09006 * 109.47015 * 56.04921 * 1 2 3 28 28 H 1.09005 * 109.47314 * 176.04866 * 1 2 3 29 29 H 1.09003 * 109.46888 * 183.95715 * 3 2 1 30 30 H 1.09007 * 109.46970 * 303.94684 * 3 2 1 31 31 H 1.08990 * 109.47110 * 63.95217 * 3 2 1 32 32 H 1.09002 * 109.46773 * 306.04780 * 4 2 1 33 33 H 1.08999 * 109.47182 * 186.04497 * 4 2 1 34 34 H 1.09002 * 109.46785 * 59.99393 * 5 4 2 35 35 H 1.08999 * 109.46906 * 300.00145 * 5 4 2 36 36 H 1.09010 * 109.49238 * 303.00643 * 7 6 5 37 37 H 1.09000 * 109.49628 * 63.07924 * 7 6 5 38 38 H 1.08996 * 109.50463 * 57.73159 * 10 8 7 39 39 H 1.09001 * 109.51176 * 177.82596 * 10 8 7 40 40 H 1.09004 * 109.50781 * 298.59561 * 12 11 10 41 41 H 1.08999 * 109.51028 * 178.45681 * 12 11 10 42 42 H 1.08994 * 109.49001 * 56.99470 * 15 6 5 43 43 H 1.09000 * 109.50651 * 296.93822 * 15 6 5 44 44 H 1.08998 * 109.46809 * 49.99967 * 17 16 13 45 45 H 1.09002 * 109.47056 * 289.99708 * 17 16 13 46 46 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9705 6 7 2.1573 -3.0084 2.1084 7 6 1.8623 -2.3326 3.3794 8 6 2.4911 -3.1213 4.5311 9 1 2.2575 -2.6349 5.4781 10 6 4.0083 -3.1828 4.3332 11 8 4.2974 -3.8771 3.1168 12 6 3.7788 -5.2093 3.0756 13 6 2.2595 -5.1653 3.2625 14 1 1.8559 -6.1777 3.2791 15 6 1.6306 -4.3803 2.1083 16 7 1.9497 -4.4893 4.5318 17 6 0.5027 -4.4826 4.7852 18 6 0.2413 -4.0091 6.1917 19 1 1.0673 -3.7395 6.8332 20 6 -1.0527 -3.9189 6.6595 21 7 -1.2805 -3.5108 7.8888 22 14 -2.4815 -4.3844 5.5499 23 1 -2.7862 -5.8284 5.7148 24 1 -3.6754 -3.5814 5.9172 25 1 -2.1186 -4.1134 4.1356 26 1 -0.3634 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0253 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8526 31 1 1.7044 1.8723 0.9232 32 1 1.5610 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1757 34 1 2.0657 -2.6214 0.0452 35 1 0.5471 -2.3475 0.9324 36 1 2.2766 -1.3245 3.3601 37 1 0.7828 -2.2799 3.5214 38 1 4.4095 -2.1708 4.2787 39 1 4.4637 -3.7104 5.1712 40 1 4.2269 -5.7992 3.8752 41 1 4.0143 -5.6620 2.1125 42 1 1.8761 -4.8641 1.1630 43 1 0.5481 -4.3546 2.2333 44 1 0.1077 -5.4910 4.6620 45 1 0.0133 -3.8118 4.0791 46 1 -2.1909 -3.4470 8.2177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:37 Heat of formation + Delta-G solvation = 0.868902 kcal Electronic energy + Delta-G solvation = -24701.581760 eV Core-core repulsion = 21434.359412 eV Total energy + Delta-G solvation = -3267.222348 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45056 -37.86782 -36.05107 -34.61948 -32.58909 -32.21374 -29.64630 -28.34725 -27.70809 -26.35157 -25.53808 -24.62929 -22.60568 -22.14115 -21.43475 -20.32869 -17.73466 -16.98301 -16.41945 -15.69519 -15.52234 -15.46150 -15.14649 -14.83491 -14.39265 -14.35051 -14.07299 -13.97186 -13.81033 -13.33599 -12.81916 -12.61747 -12.48871 -12.17441 -11.87901 -11.80795 -11.68599 -11.58209 -11.48301 -11.17784 -10.90702 -10.81488 -10.61619 -10.56969 -10.39553 -9.94634 -9.82576 -9.36261 -8.97679 -8.64299 -8.47392 -7.98331 -7.24847 -6.12949 -4.10144 3.20466 3.28212 3.29179 3.69205 4.26793 4.34096 4.47670 4.63669 4.94878 5.03088 5.08063 5.18579 5.26176 5.26801 5.36793 5.41318 5.45285 5.51283 5.55977 5.57388 5.61528 5.70911 5.80223 5.82413 5.86386 5.92445 5.99684 6.02340 6.06013 6.09587 6.20880 6.23435 6.28947 6.52021 6.75149 6.88782 6.89724 6.91269 7.36267 7.38914 7.51420 7.73980 7.80297 7.93727 8.57074 8.95126 9.48841 11.00078 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.006536 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.909226 B = 4283.037689 C = 5460.229264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.026 3.974 4 C 0.054 3.946 5 C 0.061 3.939 6 N -0.508 5.508 7 C 0.024 3.976 8 C 0.058 3.942 9 H 0.106 0.894 10 C 0.080 3.920 11 O -0.360 6.360 12 C 0.084 3.916 13 C 0.043 3.957 14 H 0.088 0.912 15 C 0.031 3.969 16 N -0.511 5.511 17 C 0.159 3.841 18 C -0.508 4.508 19 H 0.081 0.919 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.872 3.128 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.271 1.271 26 H 0.025 0.975 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.032 0.968 44 H 0.022 0.978 45 H -0.008 1.008 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.008 4.123 -14.543 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.122 4.122 4 C -0.074 4.074 5 C -0.067 4.067 6 N -0.233 5.233 7 C -0.105 4.105 8 C -0.052 4.052 9 H 0.124 0.876 10 C 0.002 3.998 11 O -0.277 6.277 12 C 0.006 3.994 13 C -0.067 4.067 14 H 0.106 0.894 15 C -0.099 4.099 16 N -0.234 5.234 17 C 0.033 3.967 18 C -0.547 4.547 19 H 0.099 0.901 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.700 3.300 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.196 1.196 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.010 0.990 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.859 3.712 -14.638 17.024 hybrid contribution -2.929 0.536 -0.074 2.978 sum 4.930 4.249 -14.712 16.087 Atomic orbital electron populations 1.22447 0.87602 1.02412 1.00355 1.61917 1.07891 1.13764 1.43656 1.22356 1.00803 0.88718 1.00339 1.22266 1.00901 0.93311 0.90909 1.22066 0.96922 0.92663 0.95049 1.62170 1.58027 1.01320 1.01811 1.22766 0.99307 0.98300 0.90124 1.22414 0.94717 0.89873 0.98189 0.87576 1.22479 0.93700 0.96620 0.86978 1.87969 1.76079 1.25988 1.37659 1.22376 0.91389 0.84906 1.00693 1.22555 0.97074 0.98274 0.88830 0.89400 1.22661 0.97063 0.90257 0.99880 1.62584 1.16928 1.15384 1.28532 1.20235 0.83105 0.95909 0.97442 1.20987 0.93671 1.43838 0.96160 0.90133 1.24872 0.98499 0.94918 0.94824 1.69887 1.20806 1.47462 1.15537 0.86907 0.82668 0.79033 0.81397 1.20042 1.21173 1.19628 0.95593 0.91551 0.91215 0.91258 0.91532 0.95684 0.94341 0.89780 0.90314 0.95684 0.90751 0.94180 0.89697 0.93348 0.93398 0.89721 0.91043 0.94961 0.95982 0.99009 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.07 0.56 0.79 16 2 N -0.55 -6.56 5.02 -251.25 -1.26 -7.82 16 3 C 0.03 0.26 9.57 60.06 0.57 0.83 16 4 C 0.05 0.70 4.22 -3.82 -0.02 0.69 16 5 C 0.06 0.87 5.21 -3.83 -0.02 0.85 16 6 N -0.51 -8.12 3.24 -234.42 -0.76 -8.88 16 7 C 0.02 0.42 3.98 -3.75 -0.01 0.41 16 8 C 0.06 1.07 2.87 -67.47 -0.19 0.88 16 9 H 0.11 2.21 6.84 -51.93 -0.36 1.85 16 10 C 0.08 1.28 6.41 37.23 0.24 1.52 16 11 O -0.36 -5.90 9.25 -35.23 -0.33 -6.23 16 12 C 0.08 1.26 6.41 37.23 0.24 1.50 16 13 C 0.04 0.72 3.03 -67.48 -0.20 0.52 16 14 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 15 C 0.03 0.51 4.64 -3.74 -0.02 0.49 16 16 N -0.51 -10.39 4.68 -219.52 -1.03 -11.42 16 17 C 0.16 3.76 3.06 -4.98 -0.02 3.74 16 18 C -0.51 -14.04 9.03 -34.44 -0.31 -14.36 16 19 H 0.08 2.42 7.42 -52.49 -0.39 2.03 16 20 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 21 N -0.90 -27.05 13.96 55.43 0.77 -26.28 16 22 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 26 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 28 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 29 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 30 H 0.07 0.57 8.12 -51.92 -0.42 0.15 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.04 0.54 6.24 -51.93 -0.32 0.22 16 33 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.38 6.49 -51.93 -0.34 0.04 16 36 H 0.07 1.18 6.00 -51.92 -0.31 0.87 16 37 H 0.04 0.82 6.38 -51.93 -0.33 0.48 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.03 0.59 6.75 -51.93 -0.35 0.24 16 44 H 0.02 0.53 7.46 -51.93 -0.39 0.15 16 45 H -0.01 -0.18 4.03 -51.93 -0.21 -0.39 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 335.63 15.07 5.06 5.06 Total: -1.00 -30.05 335.63 -9.47 -39.53 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.98 Total: -0.40 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 0.72 Total: -0.22 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -2.28 Total: -54.40 kcal Atomic # 8 Polarization: -5.90 SS G_CDS: -0.33 Total: -6.23 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.05 -9.47 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.398 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds