Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 110.99953 * 2 1 4 4 C 1.46901 * 110.99770 * 123.95307 * 2 1 3 5 5 C 1.53002 * 109.47454 * 66.04522 * 4 2 1 6 6 N 1.46893 * 109.47201 * 180.02562 * 5 4 2 7 7 C 1.46945 * 111.00298 * 46.12105 * 6 5 4 8 8 C 1.53095 * 109.34830 * 183.04542 * 7 6 5 9 9 H 1.09000 * 109.61486 * 181.15947 * 8 7 6 10 10 C 1.53133 * 109.29422 * 60.49037 * 8 7 6 11 11 O 1.43007 * 109.24910 * 297.80634 * 10 8 7 12 12 C 1.43016 * 113.79201 * 301.48258 * 11 10 8 13 13 C 1.53135 * 109.23934 * 58.51912 * 12 11 10 14 14 H 1.09001 * 110.03368 * 182.59265 * 13 12 11 15 15 C 1.46955 * 110.99944 * 170.00078 * 6 5 4 16 16 N 1.47114 * 109.10967 * 302.88787 * 13 12 11 17 17 C 1.46903 * 110.99907 * 182.79469 * 16 13 12 18 18 C 1.50694 * 109.47066 * 169.99866 * 17 16 13 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99792 * 179.72330 * 20 18 17 22 22 Si 1.86795 * 120.00009 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47088 * 89.99795 * 22 20 18 24 24 H 1.48495 * 109.47293 * 209.99997 * 22 20 18 25 25 H 1.48507 * 109.47015 * 329.99955 * 22 20 18 26 26 H 1.08998 * 109.47271 * 296.04823 * 1 2 3 27 27 H 1.09006 * 109.47015 * 56.04921 * 1 2 3 28 28 H 1.09005 * 109.47314 * 176.04866 * 1 2 3 29 29 H 1.09003 * 109.46888 * 183.95715 * 3 2 1 30 30 H 1.09007 * 109.46970 * 303.94684 * 3 2 1 31 31 H 1.08990 * 109.47110 * 63.95217 * 3 2 1 32 32 H 1.09002 * 109.46773 * 306.04780 * 4 2 1 33 33 H 1.08999 * 109.47182 * 186.04497 * 4 2 1 34 34 H 1.09002 * 109.46785 * 59.99393 * 5 4 2 35 35 H 1.08999 * 109.46906 * 300.00145 * 5 4 2 36 36 H 1.09010 * 109.49238 * 303.00643 * 7 6 5 37 37 H 1.09000 * 109.49628 * 63.07924 * 7 6 5 38 38 H 1.08996 * 109.50463 * 57.73159 * 10 8 7 39 39 H 1.09001 * 109.51176 * 177.82596 * 10 8 7 40 40 H 1.09004 * 109.50781 * 298.59561 * 12 11 10 41 41 H 1.08999 * 109.51028 * 178.45681 * 12 11 10 42 42 H 1.08994 * 109.49001 * 56.99470 * 15 6 5 43 43 H 1.09000 * 109.50651 * 296.93822 * 15 6 5 44 44 H 1.08998 * 109.46809 * 49.99967 * 17 16 13 45 45 H 1.09002 * 109.47056 * 289.99708 * 17 16 13 46 46 H 0.97000 * 119.99468 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6314 -2.2426 0.9705 6 7 2.1573 -3.0084 2.1084 7 6 1.8623 -2.3326 3.3794 8 6 2.4911 -3.1213 4.5311 9 1 2.2575 -2.6349 5.4781 10 6 4.0083 -3.1828 4.3332 11 8 4.2974 -3.8771 3.1168 12 6 3.7788 -5.2093 3.0756 13 6 2.2595 -5.1653 3.2625 14 1 1.8559 -6.1777 3.2791 15 6 1.6306 -4.3803 2.1083 16 7 1.9497 -4.4893 4.5318 17 6 0.5027 -4.4826 4.7852 18 6 0.2413 -4.0091 6.1917 19 1 1.0673 -3.7395 6.8332 20 6 -1.0527 -3.9189 6.6595 21 7 -1.2805 -3.5108 7.8888 22 14 -2.4815 -4.3844 5.5499 23 1 -2.7862 -5.8284 5.7148 24 1 -3.6754 -3.5814 5.9172 25 1 -2.1186 -4.1134 4.1356 26 1 -0.3634 0.4513 0.9233 27 1 -0.3633 0.5740 -0.8525 28 1 -0.3634 -1.0253 -0.0708 29 1 3.0828 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8526 31 1 1.7044 1.8723 0.9232 32 1 1.5610 -0.3872 2.0628 33 1 3.0797 -0.6611 1.1757 34 1 2.0657 -2.6214 0.0452 35 1 0.5471 -2.3475 0.9324 36 1 2.2766 -1.3245 3.3601 37 1 0.7828 -2.2799 3.5214 38 1 4.4095 -2.1708 4.2787 39 1 4.4637 -3.7104 5.1712 40 1 4.2269 -5.7992 3.8752 41 1 4.0143 -5.6620 2.1125 42 1 1.8761 -4.8641 1.1630 43 1 0.5481 -4.3546 2.2333 44 1 0.1077 -5.4910 4.6620 45 1 0.0133 -3.8118 4.0791 46 1 -2.1909 -3.4470 8.2177 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277939153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -22.837047 kcal Electronic energy + Delta-G solvation = -24702.609727 eV Core-core repulsion = 21434.359412 eV Total energy + Delta-G solvation = -3268.250315 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.85108 -38.89969 -37.32012 -36.12511 -34.53948 -33.68005 -31.14525 -29.79800 -28.56851 -27.69160 -27.18200 -25.80393 -23.90460 -23.42021 -23.22522 -21.44900 -19.26236 -18.91340 -17.83387 -16.94888 -16.87765 -16.57714 -16.32724 -16.19198 -16.14478 -15.62441 -15.38875 -15.27457 -15.01179 -14.90883 -14.53727 -13.96161 -13.84715 -13.36339 -13.25480 -13.05586 -12.89440 -12.78985 -12.67805 -12.59091 -12.51416 -12.23587 -12.02741 -11.96356 -11.90050 -11.82311 -11.36095 -11.18751 -10.83266 -10.34638 -9.50124 -9.32025 -8.77998 -8.34232 -6.36286 1.25990 1.26372 1.35885 2.26005 2.59321 2.98180 3.05806 3.14495 3.31609 3.85638 3.90047 3.95101 4.06162 4.08822 4.18551 4.19755 4.24275 4.40382 4.47510 4.50555 4.53764 4.58671 4.61221 4.64731 4.68977 4.73175 4.81716 4.85741 4.87608 4.88706 4.93008 4.98510 4.99278 5.01414 5.07018 5.17774 5.47707 5.88001 5.94646 5.97548 6.06772 6.13469 6.27507 6.46714 6.58128 6.69334 7.26738 8.82258 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.013530 B = 0.006536 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.909226 B = 4283.037689 C = 5460.229264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.554 5.554 3 C 0.025 3.975 4 C 0.062 3.938 5 C 0.066 3.934 6 N -0.503 5.503 7 C 0.037 3.963 8 C 0.055 3.945 9 H 0.072 0.928 10 C 0.089 3.911 11 O -0.362 6.362 12 C 0.087 3.913 13 C 0.038 3.962 14 H 0.096 0.904 15 C 0.033 3.967 16 N -0.527 5.527 17 C 0.175 3.825 18 C -0.511 4.511 19 H 0.040 0.960 20 C 0.014 3.986 21 N -0.944 5.944 22 Si 0.940 3.060 23 H -0.263 1.263 24 H -0.281 1.281 25 H -0.262 1.262 26 H 0.016 0.984 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.015 0.985 36 H 0.089 0.911 37 H 0.004 0.996 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.117 0.883 42 H 0.100 0.900 43 H 0.009 0.991 44 H 0.022 0.978 45 H -0.014 1.014 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.677 3.800 -17.445 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.278 5.278 3 C -0.123 4.123 4 C -0.066 4.066 5 C -0.062 4.062 6 N -0.227 5.227 7 C -0.092 4.092 8 C -0.055 4.055 9 H 0.090 0.910 10 C 0.012 3.988 11 O -0.279 6.279 12 C 0.010 3.990 13 C -0.072 4.072 14 H 0.114 0.886 15 C -0.096 4.096 16 N -0.251 5.251 17 C 0.048 3.952 18 C -0.549 4.549 19 H 0.059 0.941 20 C -0.184 4.184 21 N -0.584 5.584 22 Si 0.764 3.236 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.034 0.966 27 H 0.104 0.896 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.040 0.960 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.033 0.967 36 H 0.107 0.893 37 H 0.022 0.978 38 H 0.124 0.876 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.135 0.865 42 H 0.119 0.881 43 H 0.027 0.973 44 H 0.040 0.960 45 H 0.004 0.996 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.551 3.386 -17.562 19.824 hybrid contribution -3.059 0.663 0.852 3.243 sum 5.492 4.050 -16.710 18.050 Atomic orbital electron populations 1.22464 0.87339 1.02233 1.00716 1.61953 1.08202 1.14921 1.42717 1.22434 1.01361 0.87603 1.00886 1.22130 1.00942 0.92712 0.90806 1.22075 0.96325 0.93274 0.94525 1.62217 1.57739 1.01379 1.01386 1.22577 0.96876 0.99082 0.90712 1.22387 0.96843 0.89100 0.97164 0.90990 1.22420 0.91313 0.97943 0.87134 1.87967 1.75930 1.26625 1.37392 1.22513 0.89509 0.84473 1.02551 1.22748 0.98857 0.98301 0.87251 0.88563 1.22673 0.95544 0.90508 1.00896 1.62475 1.14565 1.16662 1.31353 1.19897 0.85605 0.95086 0.94578 1.21197 0.92697 1.43328 0.97689 0.94130 1.25722 1.01496 0.94921 0.96230 1.70033 1.21641 1.49160 1.17613 0.85823 0.78912 0.79215 0.79616 1.18770 1.20657 1.18627 0.96560 0.89626 0.91934 0.90463 0.89943 0.96007 0.95904 0.89436 0.89188 0.96654 0.89313 0.97773 0.87556 0.93519 0.93174 0.86542 0.88145 0.97301 0.96047 0.99613 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.32 127.69 1.19 1.63 16 2 N -0.55 -12.17 5.02 -948.82 -4.76 -16.93 16 3 C 0.03 0.44 9.57 127.69 1.22 1.66 16 4 C 0.06 1.53 4.22 86.30 0.36 1.90 16 5 C 0.07 1.76 5.21 86.31 0.45 2.21 16 6 N -0.50 -15.23 3.24 -895.58 -2.91 -18.13 16 7 C 0.04 1.30 3.98 86.33 0.34 1.64 16 8 C 0.05 2.06 2.87 44.95 0.13 2.19 16 9 H 0.07 3.18 6.84 -2.39 -0.02 3.17 16 10 C 0.09 2.77 6.41 72.03 0.46 3.23 16 11 O -0.36 -10.89 9.25 -148.98 -1.38 -12.27 16 12 C 0.09 2.36 6.41 72.03 0.46 2.82 16 13 C 0.04 1.21 3.03 44.95 0.14 1.35 16 14 H 0.10 2.92 8.07 -2.39 -0.02 2.90 16 15 C 0.03 1.02 4.64 86.32 0.40 1.42 16 16 N -0.53 -21.53 4.68 -848.43 -3.97 -25.50 16 17 C 0.18 8.40 3.06 85.55 0.26 8.66 16 18 C -0.51 -29.36 9.03 25.60 0.23 -29.13 16 19 H 0.04 2.59 7.42 -2.91 -0.02 2.57 16 20 C 0.01 0.82 5.47 84.66 0.46 1.28 16 21 N -0.94 -58.73 13.96 21.45 0.30 -58.44 16 22 Si 0.94 44.54 27.47 68.60 1.88 46.42 16 23 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.26 -11.90 6.54 99.48 0.65 -11.25 16 26 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 27 H 0.09 1.45 8.12 -2.38 -0.02 1.43 16 28 H 0.06 1.39 6.47 -2.38 -0.02 1.38 16 29 H 0.08 1.23 8.12 -2.39 -0.02 1.21 16 30 H 0.08 1.18 8.12 -2.38 -0.02 1.16 16 31 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.02 0.63 6.24 -2.39 -0.01 0.62 16 33 H 0.09 2.10 8.06 -2.39 -0.02 2.09 16 34 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 35 H 0.02 0.45 6.49 -2.39 -0.02 0.43 16 36 H 0.09 2.81 6.00 -2.38 -0.01 2.79 16 37 H 0.00 0.17 6.38 -2.39 -0.02 0.16 16 38 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 39 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.01 0.31 6.75 -2.39 -0.02 0.30 16 44 H 0.02 1.03 7.46 -2.39 -0.02 1.01 16 45 H -0.01 -0.67 4.03 -2.39 -0.01 -0.68 16 46 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -66.15 335.63 -3.83 -69.98 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.89 Total: 13.99 kcal Atomic # 6 Polarization: -5.25 SS G_CDS: 6.12 Total: 0.87 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -11.34 Total: -119.00 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.38 Total: -12.27 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.42 kcal Total: -66.15 -3.83 -69.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.146 kcal (2) G-P(sol) polarization free energy of solvation -66.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds