Wall clock time and date at job start Wed Apr 15 2020 11:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 110.99958 * 2 1 4 4 C 1.46900 * 111.00168 * 123.94938 * 2 1 3 5 5 C 1.53006 * 109.46842 * 66.04938 * 4 2 1 6 6 N 1.46895 * 109.47159 * 180.02562 * 5 4 2 7 7 C 1.48384 * 110.80587 * 314.02557 * 6 5 4 8 8 C 1.53144 * 108.52311 * 178.06241 * 7 6 5 9 9 H 1.08995 * 109.64719 * 177.32117 * 8 7 6 10 10 C 1.53147 * 109.26154 * 297.51509 * 8 7 6 11 11 N 1.47005 * 109.22816 * 62.47320 * 10 8 7 12 12 C 1.46906 * 110.99890 * 182.24417 * 11 10 8 13 13 C 1.50701 * 109.46965 * 170.00002 * 12 11 10 14 14 H 1.08005 * 120.00268 * 359.97438 * 13 12 11 15 15 C 1.37875 * 119.99915 * 180.02562 * 13 12 11 16 16 N 1.31520 * 119.99666 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46970 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47088 * 119.99589 * 17 15 13 20 20 H 1.48494 * 109.47293 * 239.99660 * 17 15 13 21 21 C 1.47009 * 110.81931 * 58.42440 * 11 10 8 22 22 C 1.53146 * 109.25041 * 301.58827 * 21 11 10 23 23 H 1.08997 * 110.17556 * 177.62311 * 22 21 11 24 24 C 1.47010 * 110.99902 * 189.99948 * 6 5 4 25 25 O 1.43184 * 109.04260 * 57.23757 * 22 21 11 26 26 H 1.09006 * 109.47353 * 296.04685 * 1 2 3 27 27 H 1.09003 * 109.47598 * 56.04488 * 1 2 3 28 28 H 1.09003 * 109.47198 * 176.04923 * 1 2 3 29 29 H 1.09002 * 109.47419 * 183.95331 * 3 2 1 30 30 H 1.09004 * 109.47542 * 303.95566 * 3 2 1 31 31 H 1.09009 * 109.47618 * 63.95352 * 3 2 1 32 32 H 1.08994 * 109.47542 * 306.05387 * 4 2 1 33 33 H 1.08991 * 109.47650 * 186.04404 * 4 2 1 34 34 H 1.08997 * 109.47412 * 59.99810 * 5 4 2 35 35 H 1.09004 * 109.46979 * 299.99660 * 5 4 2 36 36 H 1.08993 * 110.38246 * 58.05094 * 7 6 5 37 37 H 1.08995 * 109.35174 * 297.46367 * 7 6 5 38 38 H 1.08994 * 109.50808 * 302.54542 * 10 8 7 39 39 H 1.08997 * 109.55372 * 182.42313 * 10 8 7 40 40 H 1.08993 * 109.47164 * 289.99945 * 12 11 10 41 41 H 1.08996 * 109.46920 * 49.99979 * 12 11 10 42 42 H 0.97001 * 119.99343 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.50811 * 61.52306 * 21 11 10 44 44 H 1.09006 * 109.51019 * 181.65952 * 21 11 10 45 45 H 1.08995 * 109.51564 * 62.31836 * 24 6 5 46 46 H 1.09006 * 109.55087 * 302.19143 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9704 6 7 2.1574 -3.0084 2.1083 7 6 3.5625 -2.6276 2.3956 8 6 4.0411 -3.4188 3.6164 9 1 5.0876 -3.1882 3.8152 10 6 3.1899 -3.0373 4.8311 11 7 1.7907 -3.4106 4.5783 12 6 0.9290 -3.0130 5.6996 13 6 -0.5161 -3.1844 5.3079 14 1 -0.7691 -3.5515 4.3242 15 6 -1.5153 -2.8715 6.2049 16 7 -1.2072 -2.4239 7.4027 17 14 -3.3066 -3.0845 5.7197 18 1 -3.3848 -3.5995 4.3291 19 1 -3.9580 -4.0486 6.6425 20 1 -4.0008 -1.7745 5.8017 21 6 1.6747 -4.8513 4.3099 22 6 2.5442 -5.2115 3.1017 23 1 2.5023 -6.2845 2.9149 24 6 2.0373 -4.4542 1.8708 25 8 3.8962 -4.8212 3.3663 26 1 -0.3634 0.4513 0.9233 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0708 29 1 3.0827 1.3433 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 1.5611 -0.3872 2.0628 33 1 3.0796 -0.6611 1.1757 34 1 2.0658 -2.6213 0.0452 35 1 0.5472 -2.3475 0.9324 36 1 3.6314 -1.5600 2.6039 37 1 4.1861 -2.8724 1.5359 38 1 3.2554 -1.9622 4.9982 39 1 3.5542 -3.5655 5.7121 40 1 1.1474 -3.6383 6.5652 41 1 1.1164 -1.9687 5.9493 42 1 -1.9102 -2.2041 8.0339 43 1 2.0120 -5.4123 5.1813 44 1 0.6348 -5.0993 4.0967 45 1 2.6340 -4.7313 1.0018 46 1 0.9927 -4.7089 1.6914 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277939408.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:40 Heat of formation + Delta-G solvation = -1.513306 kcal Electronic energy + Delta-G solvation = -24538.463428 eV Core-core repulsion = 21271.137780 eV Total energy + Delta-G solvation = -3267.325648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.19484 -37.71860 -35.50449 -34.86049 -32.46463 -32.28511 -29.78092 -27.84926 -27.55904 -26.36274 -25.48720 -24.03705 -22.74556 -22.32784 -20.94802 -20.11647 -18.07491 -16.45481 -16.32233 -15.79434 -15.42416 -15.28235 -14.90656 -14.77011 -14.48031 -14.20268 -13.92638 -13.76699 -13.67099 -12.91743 -12.73289 -12.53031 -12.32202 -12.06212 -11.91685 -11.72264 -11.65853 -11.33930 -11.17663 -11.07725 -10.82682 -10.72723 -10.62689 -10.51482 -10.33993 -10.02641 -9.61670 -9.25052 -8.93075 -8.38310 -8.34052 -7.74555 -6.83466 -5.96918 -3.96564 3.32353 3.39903 3.44242 3.79950 4.13018 4.39001 4.46888 4.96304 5.02713 5.16657 5.19271 5.25635 5.32207 5.33885 5.39141 5.40963 5.47238 5.53021 5.61584 5.69179 5.74370 5.78145 5.79243 5.94158 5.96655 6.00133 6.02714 6.06422 6.17920 6.22452 6.23787 6.36887 6.55959 6.67385 6.98845 7.03568 7.35677 7.42638 7.43545 7.50085 7.53860 7.89170 8.19030 8.33190 8.67014 9.12367 9.66947 11.14193 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.011533 B = 0.006944 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.235515 B = 4031.138402 C = 5560.806950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.550 5.550 3 C 0.026 3.974 4 C 0.053 3.947 5 C 0.064 3.936 6 N -0.485 5.485 7 C 0.036 3.964 8 C 0.091 3.909 9 H 0.098 0.902 10 C 0.035 3.965 11 N -0.493 5.493 12 C 0.194 3.806 13 C -0.493 4.493 14 H 0.064 0.936 15 C 0.052 3.948 16 N -0.902 5.902 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.286 1.286 21 C 0.047 3.953 22 C 0.088 3.912 23 H 0.101 0.899 24 C 0.045 3.955 25 O -0.383 6.383 26 H 0.031 0.969 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.028 0.972 38 H 0.073 0.927 39 H 0.022 0.978 40 H -0.016 1.016 41 H 0.027 0.973 42 H 0.259 0.741 43 H 0.021 0.979 44 H 0.089 0.911 45 H 0.026 0.974 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 1.591 -13.051 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.274 5.274 3 C -0.123 4.123 4 C -0.075 4.075 5 C -0.065 4.065 6 N -0.209 5.209 7 C -0.093 4.093 8 C 0.032 3.968 9 H 0.116 0.884 10 C -0.095 4.095 11 N -0.217 5.217 12 C 0.069 3.931 13 C -0.532 4.532 14 H 0.082 0.918 15 C -0.148 4.148 16 N -0.542 5.542 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.213 1.213 20 H -0.212 1.212 21 C -0.082 4.082 22 C 0.030 3.970 23 H 0.119 0.881 24 C -0.084 4.084 25 O -0.302 6.302 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.040 0.960 40 H 0.002 0.998 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.039 0.961 44 H 0.107 0.893 45 H 0.044 0.956 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.123 1.664 -13.317 15.688 hybrid contribution -0.807 -0.031 0.707 1.073 sum 7.317 1.632 -12.610 14.670 Atomic orbital electron populations 1.22437 0.87271 1.02591 1.00437 1.61997 1.08299 1.13561 1.43593 1.22345 1.00444 0.89039 1.00436 1.22241 0.99656 0.93664 0.91907 1.22047 1.00708 0.92433 0.91282 1.62509 1.17622 1.03551 1.37239 1.22891 0.89335 1.00389 0.96637 1.22427 0.98731 0.81216 0.94389 0.88402 1.22529 0.91545 1.00684 0.94711 1.62287 1.03695 1.12969 1.42776 1.19714 0.91739 0.95512 0.86166 1.21175 0.90133 1.42327 0.99542 0.91789 1.24989 0.99077 0.95763 0.95004 1.69979 1.32594 1.45681 1.05956 0.86503 0.85188 0.77585 0.78482 1.19724 1.21270 1.21231 1.22436 1.00367 0.90578 0.94861 1.22552 0.82022 0.97766 0.94637 0.88127 1.22538 1.01324 0.88637 0.95873 1.88053 1.27240 1.23790 1.91076 0.95083 0.91897 0.90963 0.91657 0.91639 0.95514 0.92953 0.91067 0.95386 0.90652 0.89764 0.95363 0.90867 0.95951 0.99792 0.95493 0.93180 0.96057 0.89269 0.95619 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.32 60.06 0.56 0.81 16 2 N -0.55 -6.92 5.02 -251.26 -1.26 -8.18 16 3 C 0.03 0.27 9.57 60.06 0.57 0.85 16 4 C 0.05 0.73 4.23 -3.82 -0.02 0.71 16 5 C 0.06 0.92 5.21 -3.82 -0.02 0.90 16 6 N -0.48 -7.79 3.18 -233.06 -0.74 -8.53 16 7 C 0.04 0.52 4.41 -2.93 -0.01 0.51 16 8 C 0.09 1.41 3.96 -26.58 -0.11 1.31 16 9 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 10 C 0.03 0.64 5.06 -3.69 -0.02 0.62 16 11 N -0.49 -10.49 3.01 -235.70 -0.71 -11.20 16 12 C 0.19 5.06 4.72 -4.97 -0.02 5.03 16 13 C -0.49 -13.70 8.49 -34.44 -0.29 -13.99 16 14 H 0.06 1.77 7.13 -52.48 -0.37 1.39 16 15 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 16 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 17 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 18 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 C 0.05 0.91 4.88 -3.69 -0.02 0.90 16 22 C 0.09 1.44 4.01 -26.58 -0.11 1.33 16 23 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 24 C 0.04 0.69 5.06 -3.68 -0.02 0.67 16 25 O -0.38 -6.49 10.59 -35.23 -0.37 -6.87 16 26 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 28 H 0.07 0.89 6.47 -51.93 -0.34 0.55 16 29 H 0.06 0.63 8.12 -51.93 -0.42 0.20 16 30 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 33 H 0.07 0.91 6.19 -51.93 -0.32 0.59 16 34 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 35 H 0.08 1.17 6.55 -51.93 -0.34 0.82 16 36 H 0.08 1.16 6.14 -51.93 -0.32 0.84 16 37 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 1.32 8.09 -51.93 -0.42 0.90 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H -0.02 -0.45 8.12 -51.93 -0.42 -0.87 16 41 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16 42 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 1.85 6.82 -51.93 -0.35 1.50 16 45 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -30.55 346.03 -10.10 -40.65 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -8.35 Total: -2.54 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 0.41 Total: 1.03 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: -1.98 Total: -54.15 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.37 Total: -6.87 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.55 -10.10 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277939408.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.134 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds