Wall clock time and date at job start Wed Apr 15 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00057 * 2 1 4 4 C 1.46900 * 111.00293 * 123.95762 * 2 1 3 5 5 C 1.53002 * 109.47159 * 169.99987 * 4 2 1 6 6 C 1.53001 * 109.47106 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47378 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99550 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00348 * 179.97438 * 7 6 5 10 10 C 1.46503 * 119.99621 * 0.02562 * 9 7 6 11 11 C 1.46498 * 120.00351 * 180.02562 * 9 7 6 12 12 C 1.53004 * 109.46933 * 264.36694 * 11 9 7 13 13 H 1.08991 * 112.78006 * 316.23261 * 12 11 9 14 14 C 1.53754 * 113.55238 * 87.09230 * 12 11 9 15 15 C 1.53496 * 83.25808 * 140.98316 * 14 12 11 16 16 N 1.47069 * 87.98784 * 333.76422 * 15 14 12 17 17 C 1.36934 * 136.05813 * 207.08833 * 16 15 14 18 18 H 1.08009 * 119.99607 * 172.13701 * 17 16 15 19 19 C 1.38807 * 120.00007 * 351.85766 * 17 16 15 20 20 N 1.31613 * 120.00127 * 0.27757 * 19 17 16 21 21 Si 1.86802 * 119.99886 * 180.27667 * 19 17 16 22 22 H 1.48501 * 109.47329 * 60.00159 * 21 19 17 23 23 H 1.48497 * 109.47030 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47295 * 300.00334 * 21 19 17 25 25 H 1.09000 * 109.47144 * 296.04254 * 1 2 3 26 26 H 1.09001 * 109.47275 * 56.04696 * 1 2 3 27 27 H 1.08999 * 109.47109 * 176.04614 * 1 2 3 28 28 H 1.09006 * 109.47313 * 183.96063 * 3 2 1 29 29 H 1.09000 * 109.47058 * 303.95519 * 3 2 1 30 30 H 1.08992 * 109.47291 * 63.95647 * 3 2 1 31 31 H 1.08998 * 109.47493 * 49.99635 * 4 2 1 32 32 H 1.09005 * 109.46958 * 289.99591 * 4 2 1 33 33 H 1.08998 * 109.47205 * 59.99472 * 5 4 2 34 34 H 1.09005 * 109.46862 * 299.99663 * 5 4 2 35 35 H 1.09003 * 109.46841 * 59.99928 * 6 5 4 36 36 H 1.08997 * 109.47021 * 300.00046 * 6 5 4 37 37 H 1.09003 * 109.46576 * 270.21896 * 10 9 7 38 38 H 1.08998 * 109.47217 * 30.21266 * 10 9 7 39 39 H 1.08998 * 109.47183 * 150.22079 * 10 9 7 40 40 H 1.08993 * 109.47200 * 144.36309 * 11 9 7 41 41 H 1.09004 * 109.47038 * 24.36247 * 11 9 7 42 42 H 1.09002 * 114.39426 * 27.42443 * 14 12 11 43 43 H 1.08999 * 114.26870 * 254.53490 * 14 12 11 44 44 H 1.09002 * 113.46916 * 218.98183 * 15 14 12 45 45 H 1.09005 * 113.52179 * 88.54961 * 15 14 12 46 46 H 0.97005 * 120.00306 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0530 -1.7527 2.1553 7 6 5.5391 -1.9397 1.9902 8 8 6.1041 -1.4801 1.0204 9 7 6.2406 -2.6168 2.9207 10 6 5.5582 -3.1715 4.0925 11 6 7.6855 -2.7982 2.7606 12 6 7.9602 -4.1565 2.1121 13 1 7.3557 -4.9573 2.5378 14 6 7.9336 -4.1201 0.5752 15 6 9.1171 -5.0880 0.7121 16 7 9.3910 -4.4854 2.0254 17 6 10.4925 -4.3121 2.8203 18 1 10.4252 -3.7057 3.7116 19 6 11.6939 -4.9204 2.4837 20 7 11.7759 -5.6593 1.3977 21 14 13.1945 -4.6902 3.5722 22 1 12.9014 -5.2041 4.9344 23 1 14.3419 -5.4378 2.9980 24 1 13.5328 -3.2464 3.6501 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3432 -0.0710 29 1 1.5897 1.9163 -0.8524 30 1 1.7044 1.8723 0.9232 31 1 1.5090 -1.7407 1.1756 32 1 1.7976 -0.2248 2.0628 33 1 3.9910 0.0193 0.9321 34 1 3.7024 -1.4966 0.0449 35 1 3.5665 -2.7274 2.1937 36 1 3.8551 -1.2111 3.0803 37 1 5.5522 -2.4319 4.8932 38 1 4.5326 -3.4286 3.8277 39 1 6.0821 -4.0664 4.4283 40 1 8.1672 -2.7578 3.7374 41 1 8.0830 -2.0057 2.1264 42 1 8.1943 -3.1539 0.1431 43 1 7.0423 -4.5640 0.1319 44 1 9.9070 -4.9141 -0.0186 45 1 8.8186 -6.1349 0.7688 46 1 12.6156 -6.0841 1.1622 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691055465.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:42 Heat of formation + Delta-G solvation = 3.557306 kcal Electronic energy + Delta-G solvation = -22721.591840 eV Core-core repulsion = 19454.486070 eV Total energy + Delta-G solvation = -3267.105770 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.07653 -39.68627 -38.50457 -36.40727 -34.36550 -34.10671 -30.34259 -29.90892 -28.47360 -28.20799 -27.10594 -25.41446 -24.55825 -23.24277 -21.66148 -21.05576 -19.96744 -18.71978 -17.83858 -17.38543 -17.06281 -16.79395 -16.25358 -16.10456 -15.80054 -15.54785 -15.49144 -14.74551 -14.65447 -14.00072 -13.84239 -13.79287 -13.43318 -13.27459 -13.18796 -13.10310 -12.97850 -12.67411 -12.64961 -12.55719 -12.49790 -12.30610 -12.17996 -12.15660 -11.84351 -11.67567 -11.49522 -11.18066 -10.85877 -10.68542 -9.55099 -9.25579 -8.90669 -7.91617 -5.25355 1.44321 1.48776 1.54627 1.76091 2.07596 2.48816 3.06835 3.29365 3.43596 3.69875 3.86198 4.02995 4.14752 4.20062 4.28852 4.34834 4.38347 4.40869 4.46306 4.54782 4.58569 4.66772 4.69749 4.72689 4.78371 4.82094 4.84778 4.87115 4.99274 5.01200 5.05493 5.05886 5.09118 5.19944 5.24389 5.40798 5.46928 5.54142 5.72766 5.91468 6.11753 6.16988 6.55028 6.88751 7.31751 7.59387 8.61789 9.27554 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.036387 B = 0.002923 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.322646 B = 9575.957585 C = 9784.472322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.571 5.571 3 C 0.021 3.979 4 C 0.061 3.939 5 C -0.096 4.096 6 C -0.124 4.124 7 C 0.501 3.499 8 O -0.584 6.584 9 N -0.613 5.613 10 C 0.072 3.928 11 C 0.129 3.871 12 C 0.138 3.862 13 H 0.054 0.946 14 C -0.133 4.133 15 C 0.154 3.846 16 N -0.630 5.630 17 C -0.226 4.226 18 H 0.090 0.910 19 C -0.072 4.072 20 N -0.957 5.957 21 Si 0.981 3.019 22 H -0.272 1.272 23 H -0.296 1.296 24 H -0.276 1.276 25 H 0.031 0.969 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.088 0.912 32 H 0.046 0.954 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.027 0.973 45 H 0.020 0.980 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.995 9.612 4.737 27.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.295 5.295 3 C -0.127 4.127 4 C -0.067 4.067 5 C -0.135 4.135 6 C -0.163 4.163 7 C 0.291 3.709 8 O -0.464 6.464 9 N -0.346 5.346 10 C -0.070 4.070 11 C 0.004 3.996 12 C 0.031 3.969 13 H 0.071 0.929 14 C -0.171 4.171 15 C 0.029 3.971 16 N -0.356 5.356 17 C -0.353 4.353 18 H 0.107 0.893 19 C -0.264 4.264 20 N -0.606 5.606 21 Si 0.809 3.191 22 H -0.198 1.198 23 H -0.223 1.223 24 H -0.202 1.202 25 H 0.050 0.950 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.136 0.864 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.217 9.587 3.936 26.342 hybrid contribution 1.242 0.069 0.901 1.536 sum -22.975 9.656 4.837 25.387 Atomic orbital electron populations 1.22407 0.86072 1.02851 1.00935 1.61920 1.09012 1.14474 1.44091 1.22426 1.00719 0.88625 1.00895 1.22125 0.94224 0.98962 0.91379 1.21242 0.94822 0.99894 0.97495 1.21651 0.89008 1.04176 1.01513 1.21502 0.91178 0.76824 0.81412 1.90697 1.72872 1.50959 1.31844 1.47985 1.07679 1.54780 1.24174 1.22081 0.98808 0.99408 0.86707 1.21356 0.80774 0.96881 1.00554 1.22546 0.85249 0.94968 0.94127 0.92856 1.23416 0.97851 0.99279 0.96541 1.21899 0.93588 0.93927 0.87736 1.45984 1.02518 1.67452 1.19656 1.19285 0.87263 1.24232 1.04564 0.89277 1.25752 1.01259 0.99571 0.99843 1.70045 1.25842 1.37509 1.27188 0.85112 0.78253 0.77600 0.78141 1.19786 1.22258 1.20212 0.95040 0.91047 0.90717 0.92135 0.90919 0.94997 0.89386 0.93570 0.93001 0.92871 0.86191 0.86370 0.90831 0.87916 0.91337 0.91102 0.92374 0.91588 0.90642 0.95493 0.96188 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.57 127.69 1.22 1.52 16 2 N -0.57 -9.55 5.02 -948.86 -4.76 -14.32 16 3 C 0.02 0.34 9.32 127.69 1.19 1.53 16 4 C 0.06 0.88 4.96 86.30 0.43 1.30 16 5 C -0.10 -1.88 4.43 30.60 0.14 -1.75 16 6 C -0.12 -2.04 4.26 29.85 0.13 -1.91 16 7 C 0.50 13.97 7.67 87.66 0.67 14.65 16 8 O -0.58 -22.23 15.48 -3.04 -0.05 -22.28 16 9 N -0.61 -16.62 2.87 -846.76 -2.43 -19.06 16 10 C 0.07 1.19 10.26 127.77 1.31 2.50 16 11 C 0.13 4.73 5.42 86.38 0.47 5.20 16 12 C 0.14 5.79 4.31 41.88 0.18 5.97 16 13 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.13 -5.68 8.03 31.02 0.25 -5.43 16 15 C 0.15 7.98 7.22 83.18 0.60 8.58 16 16 N -0.63 -33.65 3.64 -713.36 -2.59 -36.24 16 17 C -0.23 -12.86 10.55 84.03 0.89 -11.97 16 18 H 0.09 4.74 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 20 N -0.96 -60.17 11.73 21.65 0.25 -59.91 16 21 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 27 H 0.07 0.79 8.12 -2.39 -0.02 0.77 16 28 H 0.06 1.12 6.47 -2.38 -0.02 1.10 16 29 H 0.07 1.02 8.12 -2.39 -0.02 1.00 16 30 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 1.04 8.06 -2.39 -0.02 1.02 16 32 H 0.05 0.56 8.12 -2.38 -0.02 0.54 16 33 H 0.05 1.20 6.51 -2.39 -0.02 1.18 16 34 H 0.05 1.33 8.10 -2.38 -0.02 1.31 16 35 H 0.12 1.36 7.40 -2.39 -0.02 1.35 16 36 H 0.12 1.30 8.11 -2.39 -0.02 1.28 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.10 1.02 6.45 -2.39 -0.02 1.01 16 39 H 0.07 1.26 8.07 -2.39 -0.02 1.24 16 40 H 0.07 2.57 8.11 -2.39 -0.02 2.55 16 41 H 0.06 2.49 7.00 -2.38 -0.02 2.47 16 42 H 0.07 3.04 7.95 -2.39 -0.02 3.02 16 43 H 0.08 2.82 8.14 -2.39 -0.02 2.81 16 44 H 0.03 1.55 7.50 -2.39 -0.02 1.53 16 45 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 Total: -1.00 -76.15 368.33 1.30 -74.85 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.92 Total: 11.91 kcal Atomic # 6 Polarization: 8.54 SS G_CDS: 7.94 Total: 16.48 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -9.54 Total: -129.53 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.15 1.30 -74.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691055465.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.407 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds