Wall clock time and date at job start Wed Apr 15 2020 11:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 110.99945 * 2 1 4 4 C 1.46895 * 111.00480 * 123.95705 * 2 1 3 5 5 C 1.52995 * 109.47183 * 170.00257 * 4 2 1 6 6 C 1.53007 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47054 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00212 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99928 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00030 * 354.97975 * 9 7 6 11 11 C 1.46500 * 120.00343 * 174.98650 * 9 7 6 12 12 C 1.53004 * 109.46917 * 275.14172 * 11 9 7 13 13 H 1.09004 * 112.73525 * 44.01555 * 12 11 9 14 14 C 1.53496 * 113.51847 * 273.22879 * 12 11 9 15 15 C 1.53756 * 83.25504 * 218.97114 * 14 12 11 16 16 N 1.47060 * 113.46859 * 174.76182 * 12 11 9 17 17 C 1.36933 * 136.05824 * 321.92633 * 16 12 11 18 18 H 1.08000 * 120.00214 * 355.14634 * 17 16 12 19 19 C 1.38812 * 120.00004 * 175.42533 * 17 16 12 20 20 N 1.31624 * 119.99965 * 359.72528 * 19 17 16 21 21 Si 1.86797 * 120.00275 * 179.72212 * 19 17 16 22 22 H 1.48502 * 109.47132 * 90.00117 * 21 19 17 23 23 H 1.48494 * 109.47324 * 210.00347 * 21 19 17 24 24 H 1.48505 * 109.46938 * 330.00149 * 21 19 17 25 25 H 1.09000 * 109.47003 * 296.04161 * 1 2 3 26 26 H 1.08995 * 109.47372 * 56.04380 * 1 2 3 27 27 H 1.08998 * 109.47214 * 176.04973 * 1 2 3 28 28 H 1.08999 * 109.46891 * 183.96115 * 3 2 1 29 29 H 1.09007 * 109.46911 * 303.95779 * 3 2 1 30 30 H 1.08998 * 109.47113 * 63.95500 * 3 2 1 31 31 H 1.09001 * 109.47062 * 49.99496 * 4 2 1 32 32 H 1.09011 * 109.46794 * 289.99758 * 4 2 1 33 33 H 1.09001 * 109.47743 * 59.99656 * 5 4 2 34 34 H 1.09005 * 109.47078 * 299.99117 * 5 4 2 35 35 H 1.09004 * 109.47127 * 59.99864 * 6 5 4 36 36 H 1.08995 * 109.47007 * 299.99893 * 6 5 4 37 37 H 1.09005 * 109.47620 * 270.00388 * 10 9 7 38 38 H 1.09006 * 109.46970 * 29.99961 * 10 9 7 39 39 H 1.08998 * 109.47386 * 150.00030 * 10 9 7 40 40 H 1.08995 * 109.47348 * 155.13986 * 11 9 7 41 41 H 1.09000 * 109.47025 * 35.14035 * 11 9 7 42 42 H 1.08995 * 114.20707 * 332.72828 * 14 12 11 43 43 H 1.09000 * 114.20928 * 105.35969 * 14 12 11 44 44 H 1.09001 * 113.46902 * 271.50285 * 15 14 12 45 45 H 1.08999 * 113.55133 * 140.98363 * 15 14 12 46 46 H 0.96998 * 120.00100 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9552 0.9702 6 6 4.0530 -1.7525 2.1553 7 6 5.5392 -1.9395 1.9902 8 8 6.1042 -1.4798 1.0204 9 7 6.2405 -2.6174 2.9202 10 6 5.5802 -3.0774 4.1444 11 6 7.6632 -2.8943 2.7071 12 6 7.8155 -4.1672 1.8717 13 1 7.1249 -4.2031 1.0291 14 6 7.8241 -5.4528 2.7103 15 6 8.9039 -5.8857 1.7049 16 7 9.2078 -4.4613 1.5009 17 6 10.3034 -3.7308 1.1252 18 1 10.2161 -2.6650 0.9745 19 6 11.5251 -4.3612 0.9323 20 7 11.6315 -5.6602 1.1159 21 14 13.0179 -3.3660 0.4122 22 1 13.7375 -2.8857 1.6192 23 1 13.9240 -4.2194 -0.3975 24 1 12.5787 -2.2018 -0.3984 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0710 29 1 1.5897 1.9164 -0.8525 30 1 1.7044 1.8724 0.9233 31 1 1.5090 -1.7407 1.1755 32 1 1.7976 -0.2247 2.0628 33 1 3.9910 0.0194 0.9321 34 1 3.7024 -1.4965 0.0449 35 1 3.5666 -2.7273 2.1937 36 1 3.8551 -1.2110 3.0802 37 1 5.6581 -2.3064 4.9110 38 1 4.5291 -3.2784 3.9368 39 1 6.0619 -3.9896 4.4963 40 1 8.1551 -3.0308 3.6701 41 1 8.1214 -2.0572 2.1805 42 1 8.1859 -5.3190 3.7297 43 1 6.9014 -6.0301 2.6528 44 1 8.5004 -6.3747 0.8183 45 1 9.7230 -6.4436 2.1587 46 1 12.4852 -6.1007 0.9815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691055466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:46 Heat of formation + Delta-G solvation = 27.261893 kcal Electronic energy + Delta-G solvation = -22725.964439 eV Core-core repulsion = 19459.886577 eV Total energy + Delta-G solvation = -3266.077862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.81851 -38.12203 -37.67822 -35.13282 -33.35229 -32.11277 -29.05118 -27.86697 -27.85146 -27.37782 -25.95117 -23.54477 -23.35697 -21.91877 -20.89214 -19.24185 -18.77602 -16.94294 -16.59366 -16.19520 -16.01224 -15.44715 -15.29412 -14.83061 -14.70719 -14.25254 -13.92814 -13.45124 -13.16448 -12.97874 -12.73087 -12.59563 -12.45820 -12.34916 -12.03550 -11.89486 -11.80249 -11.54807 -11.45766 -11.36370 -11.03957 -10.78563 -10.72123 -10.71269 -10.37533 -9.79485 -9.74183 -9.62634 -9.34506 -8.72563 -8.62579 -8.20913 -6.80247 -5.69279 -3.02533 2.88422 3.21458 3.44261 3.49420 3.52163 3.71968 4.51853 4.57800 4.76478 4.87515 4.92544 5.07747 5.10622 5.15264 5.23358 5.27142 5.33789 5.41098 5.42544 5.45759 5.48654 5.54158 5.55945 5.59013 5.70985 5.74455 5.86784 6.02468 6.06392 6.22345 6.26124 6.35952 6.51475 6.61267 6.74566 6.74943 6.78147 6.93309 7.30043 7.49516 7.65225 7.66262 8.06725 8.46213 9.11617 9.77899 10.71850 11.47477 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.003225 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.061562 B = 8679.869738 C = 9333.694943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.055 3.945 5 C -0.103 4.103 6 C -0.136 4.136 7 C 0.507 3.493 8 O -0.533 6.533 9 N -0.614 5.614 10 C 0.079 3.921 11 C 0.116 3.884 12 C 0.135 3.865 13 H 0.042 0.958 14 C -0.166 4.166 15 C 0.148 3.852 16 N -0.600 5.600 17 C -0.213 4.213 18 H 0.080 0.920 19 C -0.009 4.009 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.023 0.977 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.020 0.980 45 H 0.077 0.923 46 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.009 7.710 6.338 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.073 4.073 5 C -0.141 4.141 6 C -0.177 4.177 7 C 0.294 3.706 8 O -0.410 6.410 9 N -0.348 5.348 10 C -0.064 4.064 11 C -0.007 4.007 12 C 0.027 3.973 13 H 0.060 0.940 14 C -0.205 4.205 15 C 0.023 3.977 16 N -0.326 5.326 17 C -0.340 4.340 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.206 1.206 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.070 0.930 44 H 0.038 0.962 45 H 0.095 0.905 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -21.171 7.785 5.283 23.167 hybrid contribution 0.487 0.765 0.424 1.001 sum -20.684 8.550 5.707 23.098 Atomic orbital electron populations 1.22378 0.87405 1.02247 1.00335 1.61930 1.07663 1.14180 1.43421 1.22465 1.01647 0.88502 1.00200 1.22177 0.95955 0.98117 0.91010 1.21347 0.93222 1.01190 0.98328 1.21637 0.93047 1.02395 1.00619 1.20607 0.89318 0.78005 0.82628 1.90737 1.71535 1.48493 1.30206 1.47931 1.11360 1.55760 1.19737 1.21785 0.97924 1.00163 0.86574 1.21849 0.78512 0.99619 1.00694 1.22409 0.88817 0.92019 0.94075 0.94017 1.23765 0.99160 0.98415 0.99128 1.22137 0.94122 0.88124 0.93354 1.45668 1.04369 1.02845 1.79735 1.18943 0.85110 0.90928 1.39047 0.90250 1.24778 0.97461 0.95909 1.02365 1.69829 1.24214 1.07690 1.55125 0.86123 0.82714 0.78890 0.78115 1.21546 1.21684 1.20611 0.95840 0.91408 0.91338 0.90624 0.91500 0.95773 0.90711 0.94916 0.91155 0.90148 0.88977 0.89467 0.92989 0.91387 0.90670 0.90430 0.90259 0.90599 0.92974 0.96196 0.90520 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.57 60.06 0.57 0.76 16 2 N -0.55 -5.29 5.02 -251.26 -1.26 -6.55 16 3 C 0.02 0.18 9.32 60.07 0.56 0.74 16 4 C 0.06 0.49 4.96 -3.83 -0.02 0.47 16 5 C -0.10 -1.14 4.43 -26.73 -0.12 -1.26 16 6 C -0.14 -1.41 4.16 -27.88 -0.12 -1.53 16 7 C 0.51 7.88 7.63 -10.99 -0.08 7.79 16 8 O -0.53 -10.91 15.62 5.56 0.09 -10.82 16 9 N -0.61 -9.07 2.88 -181.57 -0.52 -9.59 16 10 C 0.08 0.78 10.24 59.85 0.61 1.39 16 11 C 0.12 2.19 5.34 -4.04 -0.02 2.16 16 12 C 0.14 2.90 4.27 -72.41 -0.31 2.59 16 13 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.17 -3.17 8.03 -26.08 -0.21 -3.38 16 15 C 0.15 3.61 7.53 -8.38 -0.06 3.55 16 16 N -0.60 -15.99 3.64 -176.85 -0.64 -16.63 16 17 C -0.21 -6.20 10.55 -15.06 -0.16 -6.36 16 18 H 0.08 2.28 7.83 -52.49 -0.41 1.87 16 19 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 20 N -0.92 -28.04 11.42 55.49 0.63 -27.40 16 21 Si 0.91 22.93 29.55 -169.99 -5.02 17.90 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 24 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 25 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 0.47 8.12 -51.93 -0.42 0.04 16 28 H 0.08 0.73 6.47 -51.93 -0.34 0.40 16 29 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 30 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.03 0.27 8.12 -51.92 -0.42 -0.16 16 33 H 0.07 0.87 6.51 -51.93 -0.34 0.53 16 34 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.09 0.79 7.58 -51.93 -0.39 0.39 16 36 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.50 6.44 -51.93 -0.33 0.16 16 39 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 40 H 0.08 1.38 7.77 -51.93 -0.40 0.98 16 41 H 0.08 1.74 7.51 -51.93 -0.39 1.35 16 42 H 0.08 1.38 7.94 -51.93 -0.41 0.96 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.08 2.04 6.92 -51.93 -0.36 1.69 16 46 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -34.72 367.89 -9.05 -43.77 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.41 Total: -2.79 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 0.55 Total: 6.58 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: -1.79 Total: -60.18 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.72 -9.05 -43.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691055466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.031 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds