Wall clock time and date at job start Wed Apr 15 2020 11:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46909 * 110.99945 * 2 1 4 4 C 1.46895 * 111.00480 * 123.95705 * 2 1 3 5 5 C 1.52995 * 109.47183 * 170.00257 * 4 2 1 6 6 C 1.53007 * 109.47085 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.47054 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00212 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99928 * 180.02562 * 7 6 5 10 10 C 1.46501 * 120.00030 * 354.97975 * 9 7 6 11 11 C 1.46500 * 120.00343 * 174.98650 * 9 7 6 12 12 C 1.53004 * 109.46917 * 275.14172 * 11 9 7 13 13 H 1.09004 * 112.73525 * 44.01555 * 12 11 9 14 14 C 1.53496 * 113.51847 * 273.22879 * 12 11 9 15 15 C 1.53756 * 83.25504 * 218.97114 * 14 12 11 16 16 N 1.47060 * 113.46859 * 174.76182 * 12 11 9 17 17 C 1.36933 * 136.05824 * 321.92633 * 16 12 11 18 18 H 1.08000 * 120.00214 * 355.14634 * 17 16 12 19 19 C 1.38812 * 120.00004 * 175.42533 * 17 16 12 20 20 N 1.31624 * 119.99965 * 359.72528 * 19 17 16 21 21 Si 1.86797 * 120.00275 * 179.72212 * 19 17 16 22 22 H 1.48502 * 109.47132 * 90.00117 * 21 19 17 23 23 H 1.48494 * 109.47324 * 210.00347 * 21 19 17 24 24 H 1.48505 * 109.46938 * 330.00149 * 21 19 17 25 25 H 1.09000 * 109.47003 * 296.04161 * 1 2 3 26 26 H 1.08995 * 109.47372 * 56.04380 * 1 2 3 27 27 H 1.08998 * 109.47214 * 176.04973 * 1 2 3 28 28 H 1.08999 * 109.46891 * 183.96115 * 3 2 1 29 29 H 1.09007 * 109.46911 * 303.95779 * 3 2 1 30 30 H 1.08998 * 109.47113 * 63.95500 * 3 2 1 31 31 H 1.09001 * 109.47062 * 49.99496 * 4 2 1 32 32 H 1.09011 * 109.46794 * 289.99758 * 4 2 1 33 33 H 1.09001 * 109.47743 * 59.99656 * 5 4 2 34 34 H 1.09005 * 109.47078 * 299.99117 * 5 4 2 35 35 H 1.09004 * 109.47127 * 59.99864 * 6 5 4 36 36 H 1.08995 * 109.47007 * 299.99893 * 6 5 4 37 37 H 1.09005 * 109.47620 * 270.00388 * 10 9 7 38 38 H 1.09006 * 109.46970 * 29.99961 * 10 9 7 39 39 H 1.08998 * 109.47386 * 150.00030 * 10 9 7 40 40 H 1.08995 * 109.47348 * 155.13986 * 11 9 7 41 41 H 1.09000 * 109.47025 * 35.14035 * 11 9 7 42 42 H 1.08995 * 114.20707 * 332.72828 * 14 12 11 43 43 H 1.09000 * 114.20928 * 105.35969 * 14 12 11 44 44 H 1.09001 * 113.46902 * 271.50285 * 15 14 12 45 45 H 1.08999 * 113.55133 * 140.98363 * 15 14 12 46 46 H 0.96998 * 120.00100 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9552 0.9702 6 6 4.0530 -1.7525 2.1553 7 6 5.5392 -1.9395 1.9902 8 8 6.1042 -1.4798 1.0204 9 7 6.2405 -2.6174 2.9202 10 6 5.5802 -3.0774 4.1444 11 6 7.6632 -2.8943 2.7071 12 6 7.8155 -4.1672 1.8717 13 1 7.1249 -4.2031 1.0291 14 6 7.8241 -5.4528 2.7103 15 6 8.9039 -5.8857 1.7049 16 7 9.2078 -4.4613 1.5009 17 6 10.3034 -3.7308 1.1252 18 1 10.2161 -2.6650 0.9745 19 6 11.5251 -4.3612 0.9323 20 7 11.6315 -5.6602 1.1159 21 14 13.0179 -3.3660 0.4122 22 1 13.7375 -2.8857 1.6192 23 1 13.9240 -4.2194 -0.3975 24 1 12.5787 -2.2018 -0.3984 25 1 -0.3633 0.4512 0.9233 26 1 -0.3634 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0710 29 1 1.5897 1.9164 -0.8525 30 1 1.7044 1.8724 0.9233 31 1 1.5090 -1.7407 1.1755 32 1 1.7976 -0.2247 2.0628 33 1 3.9910 0.0194 0.9321 34 1 3.7024 -1.4965 0.0449 35 1 3.5666 -2.7273 2.1937 36 1 3.8551 -1.2110 3.0802 37 1 5.6581 -2.3064 4.9110 38 1 4.5291 -3.2784 3.9368 39 1 6.0619 -3.9896 4.4963 40 1 8.1551 -3.0308 3.6701 41 1 8.1214 -2.0572 2.1805 42 1 8.1859 -5.3190 3.7297 43 1 6.9014 -6.0301 2.6528 44 1 8.5004 -6.3747 0.8183 45 1 9.7230 -6.4436 2.1587 46 1 12.4852 -6.1007 0.9815 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691055466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:45 Heat of formation + Delta-G solvation = 2.705188 kcal Electronic energy + Delta-G solvation = -22727.029297 eV Core-core repulsion = 19459.886577 eV Total energy + Delta-G solvation = -3267.142720 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.10069 -39.71859 -38.53213 -36.42338 -34.37760 -34.14315 -30.35369 -29.91430 -28.49750 -28.26007 -27.00269 -25.43976 -24.59272 -23.24840 -21.69318 -21.07310 -19.98103 -18.76527 -17.85786 -17.39013 -17.09440 -16.82562 -16.26495 -16.16815 -15.77056 -15.53160 -15.50031 -14.70358 -14.62793 -14.25831 -13.87729 -13.65112 -13.45486 -13.28947 -13.21289 -13.08863 -12.95943 -12.79386 -12.65764 -12.58651 -12.46379 -12.28704 -12.19704 -12.16117 -11.80526 -11.64074 -11.53649 -11.27690 -10.87742 -10.72948 -9.54363 -9.27295 -8.92294 -7.92249 -5.26879 1.41258 1.43852 1.52697 1.70632 2.07141 2.46495 3.05091 3.27087 3.47755 3.62746 3.83773 3.99748 4.10687 4.18421 4.27217 4.32781 4.40851 4.41778 4.49739 4.54177 4.57826 4.67061 4.69563 4.73360 4.76296 4.79942 4.86742 4.93330 4.98574 5.02069 5.04136 5.04675 5.09986 5.20564 5.23375 5.37335 5.49518 5.54913 5.76398 5.95105 6.09571 6.15432 6.52928 6.90347 7.28438 7.58089 8.59654 9.24112 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.003225 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.061562 B = 8679.869738 C = 9333.694943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.573 5.573 3 C 0.022 3.978 4 C 0.062 3.938 5 C -0.098 4.098 6 C -0.121 4.121 7 C 0.496 3.504 8 O -0.597 6.597 9 N -0.611 5.611 10 C 0.070 3.930 11 C 0.131 3.869 12 C 0.135 3.865 13 H 0.022 0.978 14 C -0.124 4.124 15 C 0.137 3.863 16 N -0.632 5.632 17 C -0.226 4.226 18 H 0.071 0.929 19 C -0.064 4.064 20 N -0.950 5.950 21 Si 0.977 3.023 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.033 0.967 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.034 0.966 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.090 0.910 41 H 0.036 0.964 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.008 0.992 45 H 0.049 0.951 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.544 7.867 8.587 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.297 5.297 3 C -0.127 4.127 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.161 4.161 7 C 0.286 3.714 8 O -0.478 6.478 9 N -0.344 5.344 10 C -0.072 4.072 11 C 0.007 3.993 12 C 0.028 3.972 13 H 0.040 0.960 14 C -0.162 4.162 15 C 0.012 3.988 16 N -0.358 5.358 17 C -0.355 4.355 18 H 0.089 0.911 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.805 3.195 22 H -0.205 1.205 23 H -0.216 1.216 24 H -0.203 1.203 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.090 0.910 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.767 7.939 7.585 26.181 hybrid contribution 1.214 0.718 -0.311 1.445 sum -22.552 8.657 7.274 25.229 Atomic orbital electron populations 1.22404 0.85927 1.02882 1.01003 1.61910 1.09141 1.14491 1.44203 1.22424 1.00583 0.88651 1.00994 1.22114 0.93897 0.99057 0.91470 1.21255 0.95133 0.99802 0.97448 1.21653 0.88627 1.04302 1.01544 1.21652 0.91424 0.76771 0.81535 1.90715 1.73122 1.51090 1.32869 1.48015 1.09644 1.55367 1.21372 1.22173 0.99388 1.01005 0.84593 1.21378 0.81439 0.96510 1.00006 1.22474 0.85752 0.94841 0.94173 0.96017 1.23516 0.98706 0.95917 0.98047 1.22196 0.95135 0.87004 0.94484 1.46084 1.05857 1.04131 1.79764 1.19179 0.86570 0.91028 1.38676 0.91122 1.25597 1.00167 0.97035 1.02930 1.70003 1.24574 1.09034 1.56274 0.85108 0.79104 0.77427 0.77886 1.20456 1.21649 1.20253 0.94874 0.91075 0.90690 0.92389 0.90902 0.94792 0.89260 0.93256 0.93175 0.93419 0.85941 0.85907 0.90963 0.87941 0.90063 0.89147 0.94497 0.88883 0.88850 0.97377 0.93295 0.94149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 9.57 127.69 1.22 1.55 16 2 N -0.57 -10.24 5.02 -948.84 -4.76 -15.00 16 3 C 0.02 0.37 9.32 127.69 1.19 1.56 16 4 C 0.06 0.96 4.96 86.30 0.43 1.39 16 5 C -0.10 -2.10 4.43 30.59 0.14 -1.97 16 6 C -0.12 -2.15 4.16 29.85 0.12 -2.03 16 7 C 0.50 15.01 7.63 87.66 0.67 15.68 16 8 O -0.60 -25.54 15.62 -3.03 -0.05 -25.58 16 9 N -0.61 -16.90 2.88 -846.74 -2.44 -19.34 16 10 C 0.07 1.04 10.24 127.77 1.31 2.35 16 11 C 0.13 4.92 5.34 86.38 0.46 5.38 16 12 C 0.13 5.80 4.27 41.79 0.18 5.98 16 13 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 14 C -0.12 -4.46 8.03 31.02 0.25 -4.21 16 15 C 0.14 6.79 7.53 83.26 0.63 7.42 16 16 N -0.63 -34.54 3.64 -713.43 -2.60 -37.14 16 17 C -0.23 -13.61 10.55 84.03 0.89 -12.73 16 18 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 19 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 20 N -0.95 -59.34 11.42 21.65 0.25 -59.10 16 21 Si 0.98 48.23 29.55 68.60 2.03 50.26 16 22 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 23 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 24 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 25 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 27 H 0.07 0.84 8.12 -2.39 -0.02 0.82 16 28 H 0.06 1.16 6.47 -2.39 -0.02 1.15 16 29 H 0.07 1.10 8.12 -2.38 -0.02 1.08 16 30 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.09 1.12 8.06 -2.39 -0.02 1.10 16 32 H 0.05 0.61 8.12 -2.38 -0.02 0.60 16 33 H 0.05 1.26 6.51 -2.39 -0.02 1.25 16 34 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 35 H 0.12 1.50 7.58 -2.39 -0.02 1.48 16 36 H 0.12 1.38 8.05 -2.39 -0.02 1.36 16 37 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.10 0.88 6.44 -2.38 -0.02 0.86 16 39 H 0.08 1.17 8.07 -2.39 -0.02 1.15 16 40 H 0.09 3.11 7.77 -2.39 -0.02 3.10 16 41 H 0.04 1.69 7.51 -2.39 -0.02 1.67 16 42 H 0.09 3.08 7.94 -2.39 -0.02 3.06 16 43 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.05 2.67 6.92 -2.39 -0.02 2.66 16 46 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -81.24 367.89 1.29 -79.95 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: 0.92 Total: 8.96 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 7.95 Total: 16.98 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -9.56 Total: -130.58 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.58 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -81.24 1.29 -79.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691055466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.658 kcal (2) G-P(sol) polarization free energy of solvation -81.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds