Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.47258 * 2 1 4 4 C 1.46902 * 111.00062 * 66.04881 * 3 2 1 5 5 C 1.46902 * 110.99644 * 190.00051 * 3 2 1 6 6 C 1.53006 * 109.46626 * 170.00094 * 5 3 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09010 * 112.84497 * 43.80444 * 11 10 9 13 13 C 1.53776 * 113.61603 * 174.99577 * 11 10 9 14 14 C 1.53784 * 87.08070 * 139.98508 * 13 11 10 15 15 H 1.09001 * 113.61226 * 89.11744 * 14 13 11 16 16 N 1.46498 * 113.61575 * 220.02022 * 14 13 11 17 17 C 1.36937 * 120.00086 * 204.99545 * 16 14 13 18 18 H 1.08009 * 119.99687 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00241 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00166 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47242 * 60.00154 * 21 19 17 23 23 H 1.48498 * 109.47140 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46915 * 300.00015 * 21 19 17 25 25 C 1.53771 * 113.61696 * 272.49943 * 11 10 9 26 26 H 1.08997 * 109.46846 * 60.00016 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46805 * 300.00116 * 1 2 3 29 29 H 1.09000 * 109.46805 * 239.99884 * 2 1 3 30 30 H 1.09000 * 109.47303 * 120.00171 * 2 1 3 31 31 H 1.08992 * 109.47140 * 183.95767 * 4 3 2 32 32 H 1.09002 * 109.46408 * 303.95149 * 4 3 2 33 33 H 1.09000 * 109.47025 * 63.94802 * 4 3 2 34 34 H 1.08993 * 109.47737 * 50.00226 * 5 3 2 35 35 H 1.09000 * 109.47263 * 289.99788 * 5 3 2 36 36 H 1.09000 * 109.47050 * 299.99824 * 6 5 3 37 37 H 1.09001 * 109.46801 * 59.99937 * 6 5 3 38 38 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46923 * 300.00119 * 10 9 7 40 40 H 1.09004 * 109.47042 * 59.99705 * 10 9 7 41 41 H 1.08997 * 113.62213 * 254.53367 * 13 11 10 42 42 H 1.08997 * 113.61311 * 25.44201 * 13 11 10 43 43 H 0.97000 * 120.00197 * 25.00342 * 16 14 13 44 44 H 0.96997 * 119.99982 * 179.97438 * 20 19 17 45 45 H 1.08999 * 113.61840 * 334.56661 * 25 11 10 46 46 H 1.09007 * 113.61650 * 105.47000 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6704 2.0669 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.9000 2.8791 -0.4791 7 6 5.3864 2.9264 -0.7228 8 8 6.0367 1.9029 -0.7050 9 7 5.9933 4.1063 -0.9595 10 6 7.4381 4.1523 -1.1970 11 6 7.8696 5.6003 -1.4378 12 1 7.4123 6.3001 -0.7382 13 6 9.3911 5.7746 -1.5775 14 6 9.0934 6.7822 -2.7005 15 1 8.9705 7.8060 -2.3472 16 7 10.0082 6.6781 -3.8400 17 6 10.2223 7.7631 -4.6475 18 1 9.7171 8.6958 -4.4440 19 6 11.0886 7.6643 -5.7276 20 7 11.7039 6.5276 -5.9758 21 14 11.3813 9.1447 -6.8286 22 1 11.9397 10.2591 -6.0217 23 1 12.3407 8.7811 -7.9022 24 1 10.0956 9.5703 -7.4377 25 6 7.7636 6.0383 -2.9080 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9825 3.1098 1.1988 32 1 0.5921 2.0179 1.4051 33 1 2.1771 1.5790 2.0859 34 1 3.7123 0.8289 -1.1134 35 1 3.9926 1.0358 0.6321 36 1 3.3760 3.2743 -1.3494 37 1 3.6563 3.4812 0.3962 38 1 5.4732 4.9250 -0.9734 39 1 7.9621 3.7566 -0.3269 40 1 7.6818 3.5506 -2.0726 41 1 9.8615 6.2227 -0.7023 42 1 9.9037 4.8763 -1.9215 43 1 10.4621 5.8405 -4.0227 44 1 12.3089 6.4585 -6.7308 45 1 7.8312 5.2122 -3.6158 46 1 6.9200 6.6994 -3.1069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691123787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = -12.813615 kcal Electronic energy + Delta-G solvation = -21664.140672 eV Core-core repulsion = 18396.325006 eV Total energy + Delta-G solvation = -3267.815666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.95119 -38.60471 -37.91029 -34.67959 -33.29708 -32.66343 -30.39567 -29.76235 -27.65515 -26.58126 -25.08766 -23.98187 -23.02010 -21.20874 -21.01520 -20.30570 -19.03556 -17.39219 -17.01143 -16.29831 -16.11211 -15.68518 -15.46050 -14.81147 -14.74119 -14.52433 -14.16137 -13.76997 -13.52016 -13.34340 -13.02844 -12.77361 -12.48898 -12.22079 -12.17010 -11.90067 -11.81357 -11.64900 -11.39460 -11.24280 -11.23448 -11.16062 -10.82515 -10.53657 -10.25210 -10.16605 -9.82849 -9.82657 -9.47698 -9.01976 -8.86392 -8.71874 -6.96500 -5.78159 -3.07134 2.59778 3.04320 3.43152 3.47523 3.48760 3.68603 4.54454 4.58264 4.60401 4.76197 4.82539 4.87124 4.97462 5.03608 5.08313 5.13471 5.15853 5.22907 5.26736 5.44083 5.46606 5.51253 5.55132 5.61901 5.63403 5.70052 5.82756 5.85594 5.86463 5.94083 6.09150 6.26250 6.31649 6.36385 6.46517 6.59541 6.67056 6.68204 6.82928 7.11361 7.46953 7.68297 8.18596 8.40383 9.51251 10.09673 10.43836 11.44130 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.002178 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.414190 B =12850.003276 C =13036.182237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.070 3.930 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.547 6.547 9 N -0.725 5.725 10 C 0.131 3.869 11 C -0.127 4.127 12 H 0.088 0.912 13 C -0.143 4.143 14 C 0.166 3.834 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.245 4.245 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.161 4.161 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.401 0.599 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.078 0.922 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.974 -8.663 15.511 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.132 4.132 5 C -0.058 4.058 6 C -0.178 4.178 7 C 0.296 3.704 8 O -0.424 6.424 9 N -0.376 5.376 10 C 0.008 3.992 11 C -0.146 4.146 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.350 5.350 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.202 4.202 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.044 0.956 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.234 0.766 39 H 0.081 0.919 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.664 -8.985 15.008 27.074 hybrid contribution 0.468 0.520 -0.045 0.701 sum -20.196 -8.465 14.963 26.523 Atomic orbital electron populations 1.21809 0.94776 1.01587 1.02484 1.22087 0.96098 0.88601 1.01030 1.62004 1.13940 1.16192 1.34823 1.22505 1.01525 0.99379 0.89767 1.21813 0.86395 0.95594 1.01958 1.21630 0.92429 0.99204 1.04529 1.20615 0.89926 0.83506 0.76344 1.90710 1.66966 1.33569 1.51183 1.46075 1.09941 1.09198 1.72430 1.21436 0.79243 0.97217 1.01289 1.22634 0.98442 0.94482 0.99064 0.89420 1.23450 0.93458 1.01245 1.00094 1.21521 0.89451 0.95720 0.87963 0.90686 1.42405 1.50604 1.13111 1.28928 1.19260 1.21205 0.91479 1.05693 0.91151 1.24775 0.99791 0.97157 0.99222 1.69649 1.32892 1.24333 1.31136 0.86257 0.77549 0.82043 0.80260 1.21245 1.21684 1.21248 1.23947 1.01361 1.01224 0.93640 0.91760 0.92287 0.92698 0.90593 0.94867 0.91161 0.91089 0.95607 0.89868 0.93946 0.87969 0.89038 0.76558 0.91872 0.91256 0.92031 0.90122 0.78060 0.93392 0.90359 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.84 37.16 0.37 -0.52 16 2 C 0.05 0.36 5.68 -3.82 -0.02 0.34 16 3 N -0.55 -4.47 4.76 -242.91 -1.16 -5.63 16 4 C 0.02 0.11 9.13 60.07 0.55 0.66 16 5 C 0.07 0.66 4.25 -3.82 -0.02 0.65 16 6 C -0.14 -1.17 5.62 -27.88 -0.16 -1.33 16 7 C 0.51 6.14 7.83 -10.99 -0.09 6.06 16 8 O -0.55 -8.87 15.98 5.56 0.09 -8.78 16 9 N -0.73 -7.93 5.56 -60.29 -0.33 -8.27 16 10 C 0.13 1.72 5.51 -4.04 -0.02 1.70 16 11 C -0.13 -1.67 3.75 -89.82 -0.34 -2.01 16 12 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 13 C -0.14 -2.26 7.39 -25.92 -0.19 -2.45 16 14 C 0.17 3.19 4.48 -67.12 -0.30 2.89 16 15 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 16 N -0.71 -17.79 5.40 -52.63 -0.28 -18.08 16 17 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 21 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 C -0.16 -2.63 7.43 -25.92 -0.19 -2.82 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.05 0.31 6.47 -51.93 -0.34 -0.03 16 29 H 0.08 0.56 7.93 -51.93 -0.41 0.15 16 30 H 0.03 0.24 8.12 -51.93 -0.42 -0.18 16 31 H 0.07 0.41 6.47 -51.93 -0.34 0.08 16 32 H 0.07 0.41 6.30 -51.93 -0.33 0.08 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.88 7.89 -51.93 -0.41 0.47 16 35 H 0.04 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.61 6.55 -51.93 -0.34 0.27 16 38 H 0.40 3.32 8.47 -40.82 -0.35 2.97 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.05 7.84 -51.93 -0.41 0.64 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 43 H 0.39 10.27 7.92 -40.82 -0.32 9.94 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.08 1.43 7.89 -51.93 -0.41 1.02 16 46 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -32.23 369.42 -9.33 -41.56 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.26 Total: 8.09 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.66 Total: -4.26 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: -1.05 Total: -59.47 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.23 -9.33 -41.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691123787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.751 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds