Wall clock time and date at job start Wed Apr 15 2020 11:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46901 * 109.47258 * 2 1 4 4 C 1.46902 * 111.00062 * 66.04881 * 3 2 1 5 5 C 1.46902 * 110.99644 * 190.00051 * 3 2 1 6 6 C 1.53006 * 109.46626 * 170.00094 * 5 3 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 3 8 8 O 1.21282 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00169 * 180.02562 * 9 7 6 11 11 C 1.52996 * 109.47364 * 179.97438 * 10 9 7 12 12 H 1.09010 * 112.84497 * 43.80444 * 11 10 9 13 13 C 1.53776 * 113.61603 * 174.99577 * 11 10 9 14 14 C 1.53784 * 87.08070 * 139.98508 * 13 11 10 15 15 H 1.09001 * 113.61226 * 89.11744 * 14 13 11 16 16 N 1.46498 * 113.61575 * 220.02022 * 14 13 11 17 17 C 1.36937 * 120.00086 * 204.99545 * 16 14 13 18 18 H 1.08009 * 119.99687 * 0.02562 * 17 16 14 19 19 C 1.38809 * 120.00241 * 180.02562 * 17 16 14 20 20 N 1.31615 * 119.99811 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00166 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47242 * 60.00154 * 21 19 17 23 23 H 1.48498 * 109.47140 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46915 * 300.00015 * 21 19 17 25 25 C 1.53771 * 113.61696 * 272.49943 * 11 10 9 26 26 H 1.08997 * 109.46846 * 60.00016 * 1 2 3 27 27 H 1.08996 * 109.46969 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46805 * 300.00116 * 1 2 3 29 29 H 1.09000 * 109.46805 * 239.99884 * 2 1 3 30 30 H 1.09000 * 109.47303 * 120.00171 * 2 1 3 31 31 H 1.08992 * 109.47140 * 183.95767 * 4 3 2 32 32 H 1.09002 * 109.46408 * 303.95149 * 4 3 2 33 33 H 1.09000 * 109.47025 * 63.94802 * 4 3 2 34 34 H 1.08993 * 109.47737 * 50.00226 * 5 3 2 35 35 H 1.09000 * 109.47263 * 289.99788 * 5 3 2 36 36 H 1.09000 * 109.47050 * 299.99824 * 6 5 3 37 37 H 1.09001 * 109.46801 * 59.99937 * 6 5 3 38 38 H 0.96996 * 119.99844 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46923 * 300.00119 * 10 9 7 40 40 H 1.09004 * 109.47042 * 59.99705 * 10 9 7 41 41 H 1.08997 * 113.62213 * 254.53367 * 13 11 10 42 42 H 1.08997 * 113.61311 * 25.44201 * 13 11 10 43 43 H 0.97000 * 120.00197 * 25.00342 * 16 14 13 44 44 H 0.96997 * 119.99982 * 179.97438 * 20 19 17 45 45 H 1.08999 * 113.61840 * 334.56661 * 25 11 10 46 46 H 1.09007 * 113.61650 * 105.47000 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.6704 2.0669 1.2533 5 6 3.4686 1.4310 -0.2382 6 6 3.9000 2.8791 -0.4791 7 6 5.3864 2.9264 -0.7228 8 8 6.0367 1.9029 -0.7050 9 7 5.9933 4.1063 -0.9595 10 6 7.4381 4.1523 -1.1970 11 6 7.8696 5.6003 -1.4378 12 1 7.4123 6.3001 -0.7382 13 6 9.3911 5.7746 -1.5775 14 6 9.0934 6.7822 -2.7005 15 1 8.9705 7.8060 -2.3472 16 7 10.0082 6.6781 -3.8400 17 6 10.2223 7.7631 -4.6475 18 1 9.7171 8.6958 -4.4440 19 6 11.0886 7.6643 -5.7276 20 7 11.7039 6.5276 -5.9758 21 14 11.3813 9.1447 -6.8286 22 1 11.9397 10.2591 -6.0217 23 1 12.3407 8.7811 -7.9022 24 1 10.0956 9.5703 -7.4377 25 6 7.7636 6.0383 -2.9080 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.9825 3.1098 1.1988 32 1 0.5921 2.0179 1.4051 33 1 2.1771 1.5790 2.0859 34 1 3.7123 0.8289 -1.1134 35 1 3.9926 1.0358 0.6321 36 1 3.3760 3.2743 -1.3494 37 1 3.6563 3.4812 0.3962 38 1 5.4732 4.9250 -0.9734 39 1 7.9621 3.7566 -0.3269 40 1 7.6818 3.5506 -2.0726 41 1 9.8615 6.2227 -0.7023 42 1 9.9037 4.8763 -1.9215 43 1 10.4621 5.8405 -4.0227 44 1 12.3089 6.4585 -6.7308 45 1 7.8312 5.2122 -3.6158 46 1 6.9200 6.6994 -3.1069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691123787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:48 Heat of formation + Delta-G solvation = -36.129187 kcal Electronic energy + Delta-G solvation = -21665.151711 eV Core-core repulsion = 18396.325006 eV Total energy + Delta-G solvation = -3268.826705 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96759 -39.85863 -38.63755 -36.03891 -34.98752 -33.38076 -32.17315 -30.53453 -28.70594 -27.37110 -26.44772 -25.79786 -23.88129 -22.38865 -21.82104 -21.28914 -20.40327 -19.04649 -18.21151 -17.24365 -17.05743 -16.66336 -16.36161 -16.24010 -15.99133 -15.39959 -15.20736 -15.11896 -14.89147 -14.41093 -14.22509 -13.64544 -13.41014 -13.23070 -13.09297 -13.01230 -12.90461 -12.79659 -12.68219 -12.60219 -12.28319 -12.23482 -12.07739 -11.85423 -11.75109 -11.57771 -11.54487 -11.10527 -10.85990 -10.75606 -10.05070 -9.35228 -8.97135 -7.93815 -5.22294 1.47604 1.50792 1.56858 1.65382 2.16506 2.57454 3.01633 3.37902 3.71003 3.76584 3.82390 3.89986 3.98844 4.12958 4.19764 4.26698 4.31013 4.36800 4.44487 4.55744 4.57472 4.59200 4.61956 4.64815 4.79134 4.90920 4.94261 4.98756 4.99817 5.01975 5.04338 5.06976 5.14223 5.23795 5.37301 5.38379 5.45912 5.54231 5.74695 6.03042 6.10095 6.28258 6.59827 7.28825 7.33592 8.12312 8.33892 9.29507 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.036430 B = 0.002178 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.414190 B =12850.003276 C =13036.182237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.045 3.955 3 N -0.548 5.548 4 C 0.014 3.986 5 C 0.074 3.926 6 C -0.124 4.124 7 C 0.507 3.493 8 O -0.594 6.594 9 N -0.713 5.713 10 C 0.137 3.863 11 C -0.094 4.094 12 H 0.124 0.876 13 C -0.138 4.138 14 C 0.142 3.858 15 H 0.082 0.918 16 N -0.731 5.731 17 C -0.243 4.243 18 H 0.080 0.920 19 C -0.081 4.081 20 N -0.973 5.973 21 Si 0.975 3.025 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.277 1.277 25 C -0.153 4.153 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.022 0.978 34 H 0.064 0.936 35 H 0.027 0.973 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.418 0.582 39 H 0.063 0.937 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.053 0.947 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.258 -7.023 17.029 29.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 N -0.273 5.273 4 C -0.134 4.134 5 C -0.054 4.054 6 C -0.164 4.164 7 C 0.295 3.705 8 O -0.475 6.475 9 N -0.365 5.365 10 C 0.013 3.987 11 C -0.113 4.113 12 H 0.142 0.858 13 C -0.178 4.178 14 C 0.033 3.967 15 H 0.100 0.900 16 N -0.368 5.368 17 C -0.375 4.375 18 H 0.098 0.902 19 C -0.273 4.273 20 N -0.623 5.623 21 Si 0.804 3.196 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.203 1.203 25 C -0.194 4.194 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.255 0.745 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.072 0.928 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.021 -7.294 16.577 29.291 hybrid contribution 1.123 -0.016 -0.439 1.206 sum -21.898 -7.310 16.138 28.167 Atomic orbital electron populations 1.21764 0.93467 1.02295 1.02519 1.22158 0.97150 0.88316 1.00658 1.62052 1.12738 1.16679 1.35835 1.22592 1.02221 0.99744 0.88829 1.21699 0.87263 0.95981 1.00506 1.21584 0.89551 0.98986 1.06314 1.21244 0.91230 0.82847 0.75177 1.90697 1.68260 1.35275 1.53315 1.45932 1.09085 1.09875 1.71654 1.21195 0.80728 0.96588 1.00178 1.22463 0.96284 0.95128 0.97383 0.85839 1.23336 0.95663 0.99557 0.99209 1.21975 0.90019 0.97245 0.87470 0.90000 1.42636 1.51812 1.11882 1.30451 1.19713 1.19979 0.92348 1.05477 0.90222 1.25621 1.00537 0.99899 1.01252 1.69822 1.34202 1.26505 1.31804 0.85190 0.77369 0.78914 0.78167 1.20219 1.22490 1.20333 1.23718 0.99969 1.00204 0.95476 0.92203 0.91327 0.92065 0.91245 0.95074 0.89973 0.90038 0.95927 0.91754 0.95486 0.86422 0.86300 0.74533 0.91899 0.93894 0.90293 0.91701 0.79720 0.94139 0.92813 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.84 71.98 0.71 -0.78 16 2 C 0.04 0.63 5.68 86.30 0.49 1.12 16 3 N -0.55 -8.21 4.76 -922.43 -4.39 -12.60 16 4 C 0.01 0.15 9.13 127.69 1.17 1.32 16 5 C 0.07 1.34 4.25 86.31 0.37 1.71 16 6 C -0.12 -1.84 5.62 29.85 0.17 -1.67 16 7 C 0.51 11.52 7.83 87.66 0.69 12.21 16 8 O -0.59 -19.41 15.98 -3.04 -0.05 -19.46 16 9 N -0.71 -13.91 5.56 -463.05 -2.57 -16.49 16 10 C 0.14 3.39 5.51 86.38 0.48 3.87 16 11 C -0.09 -2.22 3.75 -10.27 -0.04 -2.26 16 12 H 0.12 2.18 8.14 -2.38 -0.02 2.16 16 13 C -0.14 -4.19 7.39 31.12 0.23 -3.96 16 14 C 0.14 5.32 4.48 45.52 0.20 5.53 16 15 H 0.08 2.94 8.10 -2.39 -0.02 2.92 16 16 N -0.73 -36.87 5.40 -320.43 -1.73 -38.60 16 17 C -0.24 -13.47 9.97 84.03 0.84 -12.63 16 18 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 19 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 20 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 21 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 C -0.15 -4.78 7.43 31.12 0.23 -4.55 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 6.47 -2.39 -0.02 0.54 16 29 H 0.07 1.03 7.93 -2.39 -0.02 1.01 16 30 H 0.03 0.44 8.12 -2.39 -0.02 0.42 16 31 H 0.08 0.70 6.47 -2.39 -0.02 0.69 16 32 H 0.08 0.74 6.30 -2.39 -0.02 0.72 16 33 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.06 1.39 7.89 -2.39 -0.02 1.37 16 35 H 0.03 0.56 8.08 -2.39 -0.02 0.55 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.12 1.14 6.55 -2.39 -0.02 1.13 16 38 H 0.42 5.32 8.47 -92.71 -0.79 4.54 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.04 1.31 7.84 -2.38 -0.02 1.29 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 43 H 0.37 20.45 7.92 -92.71 -0.73 19.71 16 44 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.05 1.96 7.89 -2.39 -0.02 1.95 16 46 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 Total: -1.00 -71.56 369.42 -1.01 -72.57 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.56 Total: 30.83 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: 5.99 Total: -4.33 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -8.41 Total: -127.84 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -71.56 -1.01 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691123787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.436 kcal (2) G-P(sol) polarization free energy of solvation -71.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds