Wall clock time and date at job start Wed Apr 15 2020 11:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.05138 * 4 2 1 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46958 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.63714 * 56.68777 * 11 10 9 13 13 C 1.55157 * 110.71706 * 180.02562 * 11 10 9 14 14 C 1.54913 * 101.57923 * 153.86426 * 13 11 10 15 15 N 1.47425 * 104.83300 * 322.99755 * 14 13 11 16 16 C 1.36939 * 125.64419 * 204.16693 * 15 14 13 17 17 H 1.08002 * 119.99964 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00283 * 359.94475 * 16 15 14 19 19 N 1.31622 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00243 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46727 * 90.00499 * 20 18 16 22 22 H 1.48495 * 109.47304 * 210.00644 * 20 18 16 23 23 H 1.48503 * 109.47063 * 330.01148 * 20 18 16 24 24 C 1.47019 * 108.70669 * 24.12098 * 15 14 13 25 25 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 26 26 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 27 27 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 28 28 H 1.08998 * 109.46995 * 183.95294 * 3 2 1 29 29 H 1.09001 * 109.46977 * 303.95046 * 3 2 1 30 30 H 1.08998 * 109.47089 * 63.95199 * 3 2 1 31 31 H 1.09002 * 109.47401 * 306.04845 * 4 2 1 32 32 H 1.09001 * 109.46874 * 186.04858 * 4 2 1 33 33 H 1.09001 * 109.47194 * 299.99524 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99697 * 5 4 2 35 35 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 36 36 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 37 37 H 0.97003 * 119.99640 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47168 * 300.00640 * 10 9 7 39 39 H 1.09002 * 109.46801 * 60.00474 * 10 9 7 40 40 H 1.08993 * 111.00529 * 271.93859 * 13 11 10 41 41 H 1.08998 * 111.00350 * 35.79774 * 13 11 10 42 42 H 1.08991 * 110.37031 * 204.15112 * 14 13 11 43 43 H 1.09007 * 110.45648 * 81.87834 * 14 13 11 44 44 H 0.97001 * 119.99362 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.88391 * 239.52916 * 24 15 14 46 46 H 1.08999 * 110.00923 * 118.43014 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9704 6 6 2.1793 -3.0402 2.1556 7 6 1.8203 -4.4945 1.9912 8 8 1.1882 -4.8573 1.0218 9 7 2.2017 -5.3921 2.9214 10 6 1.8523 -6.8059 2.7619 11 6 2.4012 -7.6037 3.9464 12 1 2.0250 -7.2023 4.8873 13 6 2.0475 -9.1079 3.8062 14 6 3.1868 -9.7724 4.6187 15 7 4.3799 -8.9545 4.3342 16 6 5.6787 -9.3784 4.4271 17 1 6.4862 -8.6996 4.1956 18 6 5.9575 -10.6805 4.8193 19 7 4.9734 -11.5077 5.1014 20 14 7.7292 -11.2585 4.9467 21 1 8.2365 -11.0006 6.3183 22 1 7.7970 -12.7138 4.6593 23 1 8.5626 -10.5204 3.9638 24 6 3.9444 -7.6088 3.9331 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 1.5611 -0.3871 2.0629 32 1 3.0797 -0.6609 1.1757 33 1 0.5472 -2.3475 0.9324 34 1 2.0658 -2.6213 0.0452 35 1 3.2635 -2.9354 2.1940 36 1 1.7446 -2.6613 3.0806 37 1 2.7076 -5.1020 3.6966 38 1 0.7679 -6.9101 2.7243 39 1 2.2860 -7.1851 1.8366 40 1 1.0750 -9.3234 4.2486 41 1 2.0782 -9.4208 2.7625 42 1 3.3419 -10.7984 4.2855 43 1 2.9574 -9.7508 5.6842 44 1 5.1683 -12.4177 5.3751 45 1 4.3072 -7.3854 2.9299 46 1 4.3235 -6.8686 4.6377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691153644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:52 Heat of formation + Delta-G solvation = -20.135600 kcal Electronic energy + Delta-G solvation = -22055.657689 eV Core-core repulsion = 18787.524518 eV Total energy + Delta-G solvation = -3268.133171 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.75779 -38.02684 -37.56356 -34.63546 -33.43369 -32.46867 -29.91246 -28.57913 -27.92670 -27.43701 -25.48369 -23.91775 -22.86334 -21.10217 -20.57461 -19.89410 -19.52363 -17.16487 -16.71992 -16.29831 -16.02154 -15.60942 -15.28398 -14.93391 -14.87165 -14.63738 -13.93796 -13.73007 -13.41541 -12.92853 -12.74033 -12.51186 -12.49767 -12.12820 -11.98489 -11.80031 -11.72848 -11.59499 -11.50325 -11.46591 -10.95805 -10.82379 -10.81416 -10.43162 -10.14157 -10.01473 -9.89543 -9.70557 -9.48869 -8.92016 -8.70148 -8.65795 -6.84325 -5.66263 -3.07991 2.71368 3.22162 3.39284 3.44219 3.46410 3.68007 4.47810 4.59290 4.69257 4.80370 4.85477 5.01427 5.07822 5.11822 5.18173 5.26413 5.28200 5.35997 5.38419 5.39955 5.43636 5.51026 5.52331 5.63444 5.70453 5.89309 5.93015 6.08282 6.12616 6.13475 6.34292 6.48802 6.54800 6.58762 6.67464 6.69966 6.72782 6.90657 7.50650 7.59480 7.61877 7.85095 8.30472 8.35852 9.21323 9.82322 10.47162 11.37704 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.002495 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.294810 B =11219.658963 C =11895.542922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.053 3.947 5 C -0.101 4.101 6 C -0.141 4.141 7 C 0.510 3.490 8 O -0.545 6.545 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.114 4.114 12 H 0.075 0.925 13 C -0.135 4.135 14 C 0.151 3.849 15 N -0.605 5.605 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.922 5.922 20 Si 0.915 3.085 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.142 3.858 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.012 0.988 44 H 0.252 0.748 45 H 0.024 0.976 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 21.396 -5.040 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.272 5.272 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.139 4.139 6 C -0.181 4.181 7 C 0.296 3.704 8 O -0.423 6.423 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.134 4.134 12 H 0.094 0.906 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.331 5.331 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.208 4.208 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.207 1.207 24 C 0.015 3.985 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.235 0.765 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.030 0.970 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.684 20.707 -6.125 23.274 hybrid contribution 0.914 0.286 1.393 1.691 sum -7.771 20.993 -4.732 22.879 Atomic orbital electron populations 1.22463 0.87293 1.02804 1.00269 1.61943 1.08196 1.13690 1.43355 1.22386 1.00846 0.88792 1.00395 1.22190 1.00246 0.93892 0.91109 1.21321 1.01969 0.92472 0.98142 1.21630 1.03332 0.92220 1.00934 1.20633 0.79215 0.88076 0.82493 1.90701 1.40108 1.81111 1.30388 1.46127 1.57414 1.08634 1.25631 1.21438 0.99661 0.79099 0.98950 1.22442 0.97278 0.96828 0.96824 0.90649 1.23004 0.99848 0.93167 1.01436 1.21936 0.82469 0.98114 0.94825 1.44507 1.02579 1.06608 1.79382 1.19076 0.82011 0.95416 1.38612 0.90542 1.24801 0.97795 0.96409 1.01768 1.69801 1.28872 1.05928 1.52496 0.86062 0.83770 0.77875 0.77732 1.21650 1.21625 1.20697 1.21314 0.90863 0.89191 0.97084 0.95731 0.91492 0.90705 0.91293 0.91385 0.95765 0.94803 0.90612 0.91158 0.90205 0.88738 0.89142 0.76485 0.91792 0.91330 0.92140 0.91826 0.87536 0.97004 0.93721 0.95814 0.96471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.32 60.07 0.56 0.71 16 2 N -0.55 -4.74 5.02 -251.25 -1.26 -6.00 16 3 C 0.02 0.16 9.57 60.07 0.57 0.74 16 4 C 0.05 0.43 4.96 -3.82 -0.02 0.41 16 5 C -0.10 -0.97 4.43 -26.73 -0.12 -1.09 16 6 C -0.14 -1.25 5.70 -27.88 -0.16 -1.40 16 7 C 0.51 6.64 7.83 -10.99 -0.09 6.56 16 8 O -0.55 -9.32 15.98 5.55 0.09 -9.23 16 9 N -0.73 -9.14 5.40 -60.29 -0.33 -9.46 16 10 C 0.13 1.96 4.99 -4.04 -0.02 1.94 16 11 C -0.11 -1.89 3.02 -88.78 -0.27 -2.16 16 12 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 13 C -0.14 -2.51 6.53 -24.58 -0.16 -2.67 16 14 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 15 N -0.60 -15.44 3.39 -170.08 -0.58 -16.02 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -26.91 10.09 55.49 0.56 -26.35 16 20 Si 0.92 22.08 29.55 -169.99 -5.02 17.05 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.14 2.86 6.52 -3.07 -0.02 2.84 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 27 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.07 0.74 6.51 -51.93 -0.34 0.40 16 34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.40 4.18 8.33 -40.82 -0.34 3.84 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.14 8.06 -51.93 -0.42 0.72 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 42 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 43 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.79 16 45 H 0.02 0.49 7.76 -51.93 -0.40 0.09 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 364.40 15.07 5.49 5.49 Total: -1.00 -32.58 364.40 -9.46 -42.05 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -8.44 Total: -0.22 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 0.02 Total: 2.69 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -1.60 Total: -57.83 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.58 -9.46 -42.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691153644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.911 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds