Wall clock time and date at job start Wed Apr 15 2020 11:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 110.99788 * 2 1 4 4 C 1.46901 * 110.99975 * 123.94949 * 2 1 3 5 5 C 1.53000 * 109.46769 * 66.05138 * 4 2 1 6 6 C 1.53001 * 109.46886 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.47291 * 179.97438 * 6 5 4 8 8 O 1.21288 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00369 * 179.97438 * 7 6 5 10 10 C 1.46505 * 120.00115 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46958 * 179.97438 * 10 9 7 12 12 H 1.08995 * 110.63714 * 56.68777 * 11 10 9 13 13 C 1.55157 * 110.71706 * 180.02562 * 11 10 9 14 14 C 1.54913 * 101.57923 * 153.86426 * 13 11 10 15 15 N 1.47425 * 104.83300 * 322.99755 * 14 13 11 16 16 C 1.36939 * 125.64419 * 204.16693 * 15 14 13 17 17 H 1.08002 * 119.99964 * 179.97438 * 16 15 14 18 18 C 1.38813 * 120.00283 * 359.94475 * 16 15 14 19 19 N 1.31622 * 119.99647 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00243 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46727 * 90.00499 * 20 18 16 22 22 H 1.48495 * 109.47304 * 210.00644 * 20 18 16 23 23 H 1.48503 * 109.47063 * 330.01148 * 20 18 16 24 24 C 1.47019 * 108.70669 * 24.12098 * 15 14 13 25 25 H 1.09001 * 109.47121 * 296.04690 * 1 2 3 26 26 H 1.09005 * 109.47342 * 56.04784 * 1 2 3 27 27 H 1.08999 * 109.46894 * 176.04703 * 1 2 3 28 28 H 1.08998 * 109.46995 * 183.95294 * 3 2 1 29 29 H 1.09001 * 109.46977 * 303.95046 * 3 2 1 30 30 H 1.08998 * 109.47089 * 63.95199 * 3 2 1 31 31 H 1.09002 * 109.47401 * 306.04845 * 4 2 1 32 32 H 1.09001 * 109.46874 * 186.04858 * 4 2 1 33 33 H 1.09001 * 109.47194 * 299.99524 * 5 4 2 34 34 H 1.08992 * 109.47399 * 59.99697 * 5 4 2 35 35 H 1.09001 * 109.47109 * 299.99380 * 6 5 4 36 36 H 1.09002 * 109.47508 * 59.99571 * 6 5 4 37 37 H 0.97003 * 119.99640 * 359.97438 * 9 7 6 38 38 H 1.08998 * 109.47168 * 300.00640 * 10 9 7 39 39 H 1.09002 * 109.46801 * 60.00474 * 10 9 7 40 40 H 1.08993 * 111.00529 * 271.93859 * 13 11 10 41 41 H 1.08998 * 111.00350 * 35.79774 * 13 11 10 42 42 H 1.08991 * 110.37031 * 204.15112 * 14 13 11 43 43 H 1.09007 * 110.45648 * 81.87834 * 14 13 11 44 44 H 0.97001 * 119.99362 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.88391 * 239.52916 * 24 15 14 46 46 H 1.08999 * 110.00923 * 118.43014 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6315 -2.2425 0.9704 6 6 2.1793 -3.0402 2.1556 7 6 1.8203 -4.4945 1.9912 8 8 1.1882 -4.8573 1.0218 9 7 2.2017 -5.3921 2.9214 10 6 1.8523 -6.8059 2.7619 11 6 2.4012 -7.6037 3.9464 12 1 2.0250 -7.2023 4.8873 13 6 2.0475 -9.1079 3.8062 14 6 3.1868 -9.7724 4.6187 15 7 4.3799 -8.9545 4.3342 16 6 5.6787 -9.3784 4.4271 17 1 6.4862 -8.6996 4.1956 18 6 5.9575 -10.6805 4.8193 19 7 4.9734 -11.5077 5.1014 20 14 7.7292 -11.2585 4.9467 21 1 8.2365 -11.0006 6.3183 22 1 7.7970 -12.7138 4.6593 23 1 8.5626 -10.5204 3.9638 24 6 3.9444 -7.6088 3.9331 25 1 -0.3633 0.4513 0.9233 26 1 -0.3634 0.5740 -0.8525 27 1 -0.3633 -1.0252 -0.0708 28 1 3.0827 1.3433 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9233 31 1 1.5611 -0.3871 2.0629 32 1 3.0797 -0.6609 1.1757 33 1 0.5472 -2.3475 0.9324 34 1 2.0658 -2.6213 0.0452 35 1 3.2635 -2.9354 2.1940 36 1 1.7446 -2.6613 3.0806 37 1 2.7076 -5.1020 3.6966 38 1 0.7679 -6.9101 2.7243 39 1 2.2860 -7.1851 1.8366 40 1 1.0750 -9.3234 4.2486 41 1 2.0782 -9.4208 2.7625 42 1 3.3419 -10.7984 4.2855 43 1 2.9574 -9.7508 5.6842 44 1 5.1683 -12.4177 5.3751 45 1 4.3072 -7.3854 2.9299 46 1 4.3235 -6.8686 4.6377 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691153644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:51 Heat of formation + Delta-G solvation = -43.097303 kcal Electronic energy + Delta-G solvation = -22056.653383 eV Core-core repulsion = 18787.524518 eV Total energy + Delta-G solvation = -3269.128865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.83995 -39.30668 -38.51039 -36.03520 -34.36539 -34.08989 -31.65774 -30.04263 -28.54035 -28.38066 -27.15192 -25.29399 -23.83713 -22.21184 -21.69794 -21.32354 -20.84922 -18.90354 -17.97133 -17.29582 -16.99707 -16.76912 -16.48943 -16.08878 -15.92477 -15.61276 -15.46152 -14.92036 -14.50311 -14.27447 -14.16873 -13.54307 -13.43588 -13.26748 -13.18340 -13.05933 -12.82666 -12.76867 -12.67786 -12.57276 -12.29300 -12.20003 -12.01462 -11.88491 -11.82309 -11.57621 -11.52932 -11.36812 -10.81673 -10.73209 -10.04217 -9.27999 -8.87866 -7.77480 -5.21605 1.46536 1.48371 1.57117 1.70952 2.24999 2.49743 3.07379 3.32118 3.63824 3.76259 3.86431 3.99919 4.01621 4.07333 4.14239 4.27936 4.43076 4.47110 4.52940 4.56773 4.65589 4.68219 4.68375 4.73165 4.78009 4.81526 4.85435 4.92534 5.03487 5.03941 5.07372 5.13305 5.21683 5.35549 5.38688 5.46877 5.51767 5.66200 5.83221 6.10124 6.13941 6.32158 6.62025 7.11320 7.31617 7.79442 8.42863 9.24471 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.002495 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.294810 B =11219.658963 C =11895.542922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.570 5.570 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.095 4.095 6 C -0.130 4.130 7 C 0.506 3.494 8 O -0.591 6.591 9 N -0.719 5.719 10 C 0.143 3.857 11 C -0.093 4.093 12 H 0.097 0.903 13 C -0.124 4.124 14 C 0.151 3.849 15 N -0.629 5.629 16 C -0.238 4.238 17 H 0.080 0.920 18 C -0.070 4.070 19 N -0.949 5.949 20 Si 0.981 3.019 21 H -0.285 1.285 22 H -0.294 1.294 23 H -0.270 1.270 24 C 0.138 3.862 25 H 0.031 0.969 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.415 0.585 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.089 0.911 41 H 0.060 0.940 42 H 0.070 0.930 43 H -0.009 1.009 44 H 0.247 0.753 45 H 0.019 0.981 46 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 23.667 -4.497 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.294 5.294 3 C -0.123 4.123 4 C -0.069 4.069 5 C -0.134 4.134 6 C -0.170 4.170 7 C 0.295 3.705 8 O -0.472 6.472 9 N -0.371 5.371 10 C 0.019 3.981 11 C -0.112 4.112 12 H 0.115 0.885 13 C -0.163 4.163 14 C 0.026 3.974 15 N -0.355 5.355 16 C -0.367 4.367 17 H 0.098 0.902 18 C -0.263 4.263 19 N -0.599 5.599 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.195 1.195 24 C 0.013 3.987 25 H 0.050 0.950 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.251 0.749 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.088 0.912 43 H 0.009 0.991 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.524 23.027 -5.569 25.178 hybrid contribution 0.858 -0.395 1.200 1.527 sum -7.666 22.632 -4.368 24.291 Atomic orbital electron populations 1.22441 0.87079 1.02261 1.00922 1.61938 1.08653 1.14872 1.43954 1.22411 1.01074 0.87887 1.00962 1.22140 1.00830 0.92516 0.91455 1.21227 1.00924 0.93817 0.97394 1.21646 1.04782 0.88834 1.01767 1.21372 0.78075 0.89613 0.81481 1.90689 1.42221 1.82061 1.32226 1.46029 1.57328 1.07609 1.26163 1.21147 0.99772 0.80194 0.96992 1.22281 0.94565 0.95736 0.98618 0.88450 1.22849 0.98993 0.94045 1.00381 1.21733 0.84285 0.97013 0.94335 1.44836 1.02276 1.08975 1.79450 1.19458 0.83500 0.95749 1.38040 0.90173 1.25658 1.01737 0.96706 1.02153 1.70062 1.30613 1.05815 1.53440 0.85042 0.79309 0.76920 0.77843 1.21226 1.22061 1.19501 1.21495 0.93419 0.87018 0.96787 0.95044 0.90866 0.91859 0.90878 0.90919 0.95098 0.93594 0.89704 0.92532 0.92819 0.86574 0.86145 0.74897 0.91000 0.93401 0.89271 0.92138 0.91212 0.99070 0.94366 0.96259 0.95054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.32 127.69 1.19 1.49 16 2 N -0.57 -9.03 5.02 -948.82 -4.76 -13.79 16 3 C 0.02 0.28 9.57 127.69 1.22 1.51 16 4 C 0.06 0.81 4.96 86.30 0.43 1.24 16 5 C -0.10 -1.71 4.43 30.59 0.14 -1.57 16 6 C -0.13 -1.94 5.70 29.85 0.17 -1.77 16 7 C 0.51 12.27 7.83 87.66 0.69 12.96 16 8 O -0.59 -19.92 15.98 -3.05 -0.05 -19.97 16 9 N -0.72 -16.27 5.40 -463.04 -2.50 -18.77 16 10 C 0.14 3.97 4.99 86.38 0.43 4.40 16 11 C -0.09 -2.87 3.02 -9.60 -0.03 -2.89 16 12 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.12 -4.45 6.53 31.99 0.21 -4.24 16 14 C 0.15 7.41 5.89 86.86 0.51 7.92 16 15 N -0.63 -32.23 3.39 -692.00 -2.35 -34.57 16 16 C -0.24 -13.39 10.27 84.03 0.86 -12.53 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -4.00 5.49 84.86 0.47 -3.54 16 19 N -0.95 -56.86 10.09 21.65 0.22 -56.64 16 20 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.14 5.38 6.52 86.73 0.57 5.94 16 25 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.07 0.92 8.12 -2.38 -0.02 0.90 16 27 H 0.06 1.03 6.47 -2.39 -0.02 1.02 16 28 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 29 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.03 0.31 8.14 -2.39 -0.02 0.30 16 31 H 0.05 0.54 8.12 -2.39 -0.02 0.52 16 32 H 0.08 1.02 8.06 -2.39 -0.02 1.00 16 33 H 0.06 1.16 6.51 -2.39 -0.02 1.15 16 34 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.41 7.21 8.33 -92.71 -0.77 6.44 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.55 8.06 -2.39 -0.02 1.53 16 40 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 41 H 0.06 2.21 8.05 -2.39 -0.02 2.20 16 42 H 0.07 3.94 5.87 -2.39 -0.01 3.93 16 43 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 44 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 45 H 0.02 0.78 7.76 -2.39 -0.02 0.76 16 46 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -72.38 364.40 -0.40 -72.78 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.16 Total: 14.27 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.85 Total: 8.91 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -9.39 Total: -123.78 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -72.38 -0.40 -72.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691153644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.687 kcal (2) G-P(sol) polarization free energy of solvation -72.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds