Wall clock time and date at job start Wed Apr 15 2020 11:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 110.99967 * 2 1 4 4 C 1.46897 * 110.99584 * 123.95025 * 2 1 3 5 5 C 1.53008 * 109.46941 * 170.00048 * 4 2 1 6 6 C 1.52995 * 109.46807 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99759 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00344 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47035 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.91541 * 308.90373 * 11 10 9 13 13 C 1.55153 * 111.00503 * 185.00063 * 11 10 9 14 14 C 1.54323 * 103.10236 * 206.33608 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36932 * 125.59278 * 181.00707 * 15 14 13 17 17 H 1.08009 * 119.99968 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00375 * 0.02562 * 16 15 14 19 19 N 1.31621 * 119.99804 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00331 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46765 * 89.99781 * 20 18 16 22 22 H 1.48499 * 109.47272 * 209.99882 * 20 18 16 23 23 H 1.48499 * 109.47136 * 330.00058 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.09004 * 109.47491 * 296.05027 * 1 2 3 26 26 H 1.09008 * 109.47209 * 56.05088 * 1 2 3 27 27 H 1.09000 * 109.47256 * 176.04767 * 1 2 3 28 28 H 1.09005 * 109.47316 * 183.95281 * 3 2 1 29 29 H 1.09003 * 109.47348 * 303.95182 * 3 2 1 30 30 H 1.09002 * 109.47474 * 63.94830 * 3 2 1 31 31 H 1.09004 * 109.47287 * 49.99776 * 4 2 1 32 32 H 1.09001 * 109.47561 * 289.99787 * 4 2 1 33 33 H 1.08996 * 109.46586 * 59.99969 * 5 4 2 34 34 H 1.08992 * 109.46717 * 299.99988 * 5 4 2 35 35 H 1.08997 * 109.48072 * 60.00006 * 6 5 4 36 36 H 1.09001 * 109.47435 * 299.99580 * 6 5 4 37 37 H 0.97002 * 119.99905 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.47022 * 60.00359 * 10 9 7 39 39 H 1.08994 * 109.47334 * 299.99712 * 10 9 7 40 40 H 1.09002 * 110.72030 * 324.78875 * 13 11 10 41 41 H 1.09003 * 110.72184 * 87.88526 * 13 11 10 42 42 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 43 43 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 44 44 H 0.97005 * 120.00149 * 180.02562 * 19 18 16 45 45 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 46 46 H 1.08996 * 110.46287 * 94.77884 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9705 6 6 4.0525 -1.7536 2.1550 7 6 5.5389 -1.9396 1.9907 8 8 6.1041 -1.4794 1.0213 9 7 6.2402 -2.6173 2.9209 10 6 7.6851 -2.7986 2.7608 11 6 8.2333 -3.5968 3.9454 12 1 7.9132 -3.1591 4.8910 13 6 9.7797 -3.7027 3.8768 14 6 10.0756 -5.0065 4.6475 15 7 8.8419 -5.8143 4.6200 16 6 8.6780 -7.0392 5.2096 17 1 7.7314 -7.5536 5.1321 18 6 9.7283 -7.6200 5.9070 19 7 10.8820 -6.9934 6.0011 20 14 9.5049 -9.2914 6.7108 21 1 9.8814 -10.3577 5.7482 22 1 10.3710 -9.3820 7.9136 23 1 8.0847 -9.4632 7.1093 24 6 7.8152 -5.0856 3.8529 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9232 31 1 1.5088 -1.7406 1.1758 32 1 1.7975 -0.2247 2.0629 33 1 3.9908 0.0193 0.9324 34 1 3.7023 -1.4966 0.0453 35 1 3.5660 -2.7282 2.1928 36 1 3.8546 -1.2127 3.0804 37 1 5.7882 -2.9850 3.6964 38 1 8.1715 -1.8240 2.7227 39 1 7.8831 -3.3400 1.8358 40 1 10.1154 -3.7813 2.8427 41 1 10.2469 -2.8495 4.3687 42 1 10.8874 -5.5482 4.1619 43 1 10.3460 -4.7749 5.6778 44 1 11.6161 -7.3994 6.4881 45 1 6.8322 -5.2320 4.3005 46 1 7.8109 -5.4145 2.8138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691153645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:55 Heat of formation + Delta-G solvation = -21.303054 kcal Electronic energy + Delta-G solvation = -22008.804289 eV Core-core repulsion = 18740.620493 eV Total energy + Delta-G solvation = -3268.183796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.75984 -38.02011 -37.54530 -34.63497 -33.44123 -32.46177 -29.89514 -28.60404 -27.93298 -27.46311 -25.45044 -23.91582 -22.86211 -21.09842 -20.51966 -19.98673 -19.56362 -17.16425 -16.67466 -16.29982 -16.07678 -15.58223 -15.31749 -14.93368 -14.74533 -14.58595 -13.98662 -13.74272 -13.35626 -13.07918 -12.74660 -12.56059 -12.33416 -12.17363 -12.03677 -11.92792 -11.78415 -11.61985 -11.51033 -11.37088 -10.90484 -10.83107 -10.80250 -10.39502 -10.15851 -10.01167 -9.88187 -9.68400 -9.63237 -8.92783 -8.70710 -8.61096 -6.84038 -5.71806 -3.05347 2.70235 3.21216 3.39345 3.44064 3.46109 3.67452 4.48654 4.58573 4.68605 4.79785 4.84998 5.01076 5.07502 5.11507 5.17014 5.23487 5.27227 5.35579 5.37838 5.40532 5.44417 5.50531 5.55145 5.62945 5.69122 5.90380 5.92348 6.05997 6.07410 6.12198 6.35139 6.47094 6.50305 6.53879 6.66892 6.69316 6.69746 6.91448 7.55184 7.58625 7.62557 7.81950 8.24781 8.29358 9.20889 9.81744 10.48041 11.40027 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.002453 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.712999 B =11411.452308 C =12121.135556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.548 5.548 3 C 0.020 3.980 4 C 0.053 3.947 5 C -0.101 4.101 6 C -0.141 4.141 7 C 0.510 3.490 8 O -0.546 6.546 9 N -0.727 5.727 10 C 0.132 3.868 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.136 4.136 14 C 0.178 3.822 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.143 3.857 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.024 0.976 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.401 0.599 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.252 0.748 45 H 0.035 0.965 46 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.107 14.824 -7.438 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.272 5.272 3 C -0.128 4.128 4 C -0.075 4.075 5 C -0.139 4.139 6 C -0.181 4.181 7 C 0.296 3.704 8 O -0.424 6.424 9 N -0.378 5.378 10 C 0.008 3.992 11 C -0.137 4.137 12 H 0.097 0.903 13 C -0.175 4.175 14 C 0.053 3.947 15 N -0.334 5.334 16 C -0.357 4.357 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.017 3.983 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.236 0.764 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -16.401 14.768 -8.433 23.626 hybrid contribution -0.513 -0.728 1.660 1.883 sum -16.914 14.041 -6.773 23.002 Atomic orbital electron populations 1.22387 0.87324 1.02309 1.00403 1.61941 1.07749 1.14142 1.43348 1.22463 1.01528 0.88565 1.00280 1.22192 0.95871 0.98266 0.91124 1.21320 0.93377 1.01067 0.98132 1.21631 0.92646 1.02892 1.00959 1.20631 0.89480 0.77798 0.82490 1.90698 1.71918 1.49301 1.30435 1.46126 1.09654 1.56396 1.25601 1.21387 0.79097 0.99795 0.98901 1.22607 0.97385 0.96802 0.96880 0.90289 1.22859 0.93353 1.00399 1.00845 1.21228 0.89007 0.86650 0.97810 1.44601 1.08760 1.18803 1.61231 1.19054 0.97790 0.92850 1.25976 0.90506 1.24813 0.95981 0.98904 1.00892 1.69966 1.02651 1.37970 1.46386 0.86113 0.77175 0.83705 0.78721 1.21606 1.21688 1.20727 1.21568 0.92859 0.88991 0.94932 0.95757 0.91386 0.91295 0.90705 0.91495 0.95722 0.90614 0.94792 0.91151 0.90225 0.88735 0.89123 0.76439 0.91795 0.91411 0.92221 0.92033 0.93840 0.93529 0.93757 0.94670 0.96349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.73 16 2 N -0.55 -4.67 5.02 -251.25 -1.26 -5.93 16 3 C 0.02 0.15 9.32 60.06 0.56 0.71 16 4 C 0.05 0.42 4.96 -3.82 -0.02 0.40 16 5 C -0.10 -0.95 4.43 -26.73 -0.12 -1.07 16 6 C -0.14 -1.22 5.70 -27.88 -0.16 -1.38 16 7 C 0.51 6.50 7.83 -10.99 -0.09 6.42 16 8 O -0.55 -9.15 15.98 5.56 0.09 -9.06 16 9 N -0.73 -8.93 5.50 -60.30 -0.33 -9.26 16 10 C 0.13 1.90 5.13 -4.04 -0.02 1.88 16 11 C -0.12 -1.92 3.05 -88.47 -0.27 -2.19 16 12 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 13 C -0.14 -2.47 6.41 -24.90 -0.16 -2.63 16 14 C 0.18 4.29 5.39 -2.81 -0.02 4.27 16 15 N -0.61 -15.42 3.41 -169.69 -0.58 -15.99 16 16 C -0.23 -6.35 10.28 -15.06 -0.15 -6.51 16 17 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 18 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.12 10.31 55.49 0.57 -26.55 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 C 0.14 2.85 6.65 -2.52 -0.02 2.83 16 25 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 26 H 0.07 0.40 8.12 -51.92 -0.42 -0.02 16 27 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.07 0.61 6.47 -51.93 -0.34 0.27 16 29 H 0.07 0.45 8.12 -51.93 -0.42 0.02 16 30 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 32 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 33 H 0.07 0.73 6.51 -51.93 -0.34 0.39 16 34 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.40 4.10 8.47 -40.82 -0.35 3.76 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 40 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 43 H 0.05 1.24 7.39 -51.93 -0.38 0.85 16 44 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.02 0.38 7.90 -51.93 -0.41 -0.03 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -32.79 365.48 -9.49 -42.28 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.49 Total: -1.13 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 0.02 Total: 3.10 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -1.60 Total: -57.74 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.79 -9.49 -42.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691153645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.979 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds