Wall clock time and date at job start Wed Apr 15 2020 11:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46894 * 110.99967 * 2 1 4 4 C 1.46897 * 110.99584 * 123.95025 * 2 1 3 5 5 C 1.53008 * 109.46941 * 170.00048 * 4 2 1 6 6 C 1.52995 * 109.46807 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99759 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00344 * 179.97438 * 7 6 5 10 10 C 1.46502 * 119.99992 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47035 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.91541 * 308.90373 * 11 10 9 13 13 C 1.55153 * 111.00503 * 185.00063 * 11 10 9 14 14 C 1.54323 * 103.10236 * 206.33608 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36932 * 125.59278 * 181.00707 * 15 14 13 17 17 H 1.08009 * 119.99968 * 180.02562 * 16 15 14 18 18 C 1.38806 * 120.00375 * 0.02562 * 16 15 14 19 19 N 1.31621 * 119.99804 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00331 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46765 * 89.99781 * 20 18 16 22 22 H 1.48499 * 109.47272 * 209.99882 * 20 18 16 23 23 H 1.48499 * 109.47136 * 330.00058 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.09004 * 109.47491 * 296.05027 * 1 2 3 26 26 H 1.09008 * 109.47209 * 56.05088 * 1 2 3 27 27 H 1.09000 * 109.47256 * 176.04767 * 1 2 3 28 28 H 1.09005 * 109.47316 * 183.95281 * 3 2 1 29 29 H 1.09003 * 109.47348 * 303.95182 * 3 2 1 30 30 H 1.09002 * 109.47474 * 63.94830 * 3 2 1 31 31 H 1.09004 * 109.47287 * 49.99776 * 4 2 1 32 32 H 1.09001 * 109.47561 * 289.99787 * 4 2 1 33 33 H 1.08996 * 109.46586 * 59.99969 * 5 4 2 34 34 H 1.08992 * 109.46717 * 299.99988 * 5 4 2 35 35 H 1.08997 * 109.48072 * 60.00006 * 6 5 4 36 36 H 1.09001 * 109.47435 * 299.99580 * 6 5 4 37 37 H 0.97002 * 119.99905 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.47022 * 60.00359 * 10 9 7 39 39 H 1.08994 * 109.47334 * 299.99712 * 10 9 7 40 40 H 1.09002 * 110.72030 * 324.78875 * 13 11 10 41 41 H 1.09003 * 110.72184 * 87.88526 * 13 11 10 42 42 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 43 43 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 44 44 H 0.97005 * 120.00149 * 180.02562 * 19 18 16 45 45 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 46 46 H 1.08996 * 110.46287 * 94.77884 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9953 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9705 6 6 4.0525 -1.7536 2.1550 7 6 5.5389 -1.9396 1.9907 8 8 6.1041 -1.4794 1.0213 9 7 6.2402 -2.6173 2.9209 10 6 7.6851 -2.7986 2.7608 11 6 8.2333 -3.5968 3.9454 12 1 7.9132 -3.1591 4.8910 13 6 9.7797 -3.7027 3.8768 14 6 10.0756 -5.0065 4.6475 15 7 8.8419 -5.8143 4.6200 16 6 8.6780 -7.0392 5.2096 17 1 7.7314 -7.5536 5.1321 18 6 9.7283 -7.6200 5.9070 19 7 10.8820 -6.9934 6.0011 20 14 9.5049 -9.2914 6.7108 21 1 9.8814 -10.3577 5.7482 22 1 10.3710 -9.3820 7.9136 23 1 8.0847 -9.4632 7.1093 24 6 7.8152 -5.0856 3.8529 25 1 -0.3634 0.4513 0.9233 26 1 -0.3634 0.5739 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3432 -0.0708 29 1 1.5898 1.9163 -0.8525 30 1 1.7043 1.8724 0.9232 31 1 1.5088 -1.7406 1.1758 32 1 1.7975 -0.2247 2.0629 33 1 3.9908 0.0193 0.9324 34 1 3.7023 -1.4966 0.0453 35 1 3.5660 -2.7282 2.1928 36 1 3.8546 -1.2127 3.0804 37 1 5.7882 -2.9850 3.6964 38 1 8.1715 -1.8240 2.7227 39 1 7.8831 -3.3400 1.8358 40 1 10.1154 -3.7813 2.8427 41 1 10.2469 -2.8495 4.3687 42 1 10.8874 -5.5482 4.1619 43 1 10.3460 -4.7749 5.6778 44 1 11.6161 -7.3994 6.4881 45 1 6.8322 -5.2320 4.3005 46 1 7.8109 -5.4145 2.8138 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691153645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:54 Heat of formation + Delta-G solvation = -44.559762 kcal Electronic energy + Delta-G solvation = -22009.812775 eV Core-core repulsion = 18740.620493 eV Total energy + Delta-G solvation = -3269.192282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81479 -39.27606 -38.50546 -36.00756 -34.35888 -34.08583 -31.63690 -30.07721 -28.54286 -28.38200 -27.11032 -25.29051 -23.81822 -22.10103 -21.68735 -21.48927 -20.84008 -18.86825 -17.92638 -17.30385 -17.00908 -16.70102 -16.41334 -16.11623 -15.86907 -15.59377 -15.42599 -15.01612 -14.44599 -14.39210 -13.96867 -13.80411 -13.48767 -13.27176 -13.12085 -13.02523 -12.79191 -12.74683 -12.63617 -12.56185 -12.28792 -12.19030 -12.01599 -11.87370 -11.84124 -11.53504 -11.52011 -11.45706 -10.80702 -10.70625 -10.02218 -9.27756 -8.89616 -7.84497 -5.20047 1.46226 1.48331 1.56838 1.72384 2.26203 2.50060 3.07884 3.33811 3.61855 3.74682 3.87995 4.01820 4.03778 4.06032 4.15116 4.28338 4.43513 4.46993 4.53419 4.57010 4.63057 4.68568 4.69130 4.76072 4.79004 4.82368 4.85148 4.93805 5.03851 5.04297 5.07523 5.08391 5.22528 5.35753 5.40431 5.46158 5.54072 5.67684 5.78347 6.10450 6.14299 6.20050 6.63389 7.10198 7.32850 7.78158 8.43105 9.26153 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.032790 B = 0.002453 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.712999 B =11411.452308 C =12121.135556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.569 5.569 3 C 0.021 3.979 4 C 0.058 3.942 5 C -0.095 4.095 6 C -0.131 4.131 7 C 0.507 3.493 8 O -0.591 6.591 9 N -0.719 5.719 10 C 0.144 3.856 11 C -0.093 4.093 12 H 0.091 0.909 13 C -0.125 4.125 14 C 0.183 3.817 15 N -0.631 5.631 16 C -0.241 4.241 17 H 0.084 0.916 18 C -0.071 4.071 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.266 1.266 24 C 0.138 3.862 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.030 0.970 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.414 0.586 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.003 0.997 43 H 0.014 0.986 44 H 0.246 0.754 45 H 0.051 0.949 46 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.532 15.399 -7.025 25.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.294 5.294 3 C -0.127 4.127 4 C -0.070 4.070 5 C -0.133 4.133 6 C -0.171 4.171 7 C 0.295 3.705 8 O -0.472 6.472 9 N -0.371 5.371 10 C 0.019 3.981 11 C -0.113 4.113 12 H 0.110 0.890 13 C -0.163 4.163 14 C 0.058 3.942 15 N -0.357 5.357 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.264 4.264 19 N -0.602 5.602 20 Si 0.808 3.192 21 H -0.216 1.216 22 H -0.222 1.222 23 H -0.190 1.190 24 C 0.013 3.987 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.251 0.749 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.022 0.978 43 H 0.032 0.968 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.880 15.349 -8.017 25.619 hybrid contribution 0.224 -0.901 1.476 1.743 sum -18.657 14.448 -6.541 24.487 Atomic orbital electron populations 1.22413 0.86193 1.02799 1.00943 1.61938 1.08928 1.14556 1.43937 1.22440 1.00853 0.88521 1.00899 1.22146 0.94520 0.98890 0.91419 1.21226 0.94633 1.00042 0.97445 1.21646 0.89364 1.04360 1.01701 1.21344 0.91014 0.76625 0.81492 1.90687 1.73099 1.51115 1.32249 1.46032 1.08751 1.56240 1.26115 1.21101 0.80565 0.99385 0.97034 1.22404 0.95735 0.94752 0.98412 0.89040 1.22726 0.95128 0.97859 1.00619 1.20994 0.87996 0.88837 0.96360 1.44941 1.10444 1.18795 1.61519 1.19484 0.97985 0.94007 1.25491 0.89790 1.25691 0.95890 1.02644 1.02126 1.70196 1.03286 1.39415 1.47325 0.85061 0.77659 0.79229 0.77281 1.21562 1.22173 1.19034 1.21756 0.92351 0.90603 0.93958 0.95145 0.90923 0.90846 0.91830 0.90868 0.95099 0.89664 0.93688 0.92579 0.92711 0.86486 0.86307 0.74905 0.91164 0.92765 0.91318 0.89652 0.97840 0.96787 0.94481 0.93102 0.96621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.57 127.69 1.22 1.50 16 2 N -0.57 -8.85 5.02 -948.81 -4.76 -13.62 16 3 C 0.02 0.30 9.32 127.69 1.19 1.49 16 4 C 0.06 0.79 4.96 86.31 0.43 1.22 16 5 C -0.09 -1.66 4.43 30.60 0.14 -1.52 16 6 C -0.13 -1.89 5.70 29.85 0.17 -1.72 16 7 C 0.51 11.90 7.83 87.66 0.69 12.59 16 8 O -0.59 -19.37 15.98 -3.04 -0.05 -19.42 16 9 N -0.72 -15.73 5.50 -463.07 -2.55 -18.28 16 10 C 0.14 3.82 5.13 86.38 0.44 4.27 16 11 C -0.09 -2.87 3.05 -9.40 -0.03 -2.90 16 12 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 13 C -0.12 -4.41 6.41 31.78 0.20 -4.20 16 14 C 0.18 9.04 5.39 86.64 0.47 9.50 16 15 N -0.63 -32.09 3.41 -690.79 -2.35 -34.44 16 16 C -0.24 -13.42 10.28 84.03 0.86 -12.55 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 19 N -0.95 -57.78 10.31 21.65 0.22 -57.56 16 20 Si 0.98 45.69 29.55 68.60 2.03 47.72 16 21 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 C 0.14 5.32 6.65 86.86 0.58 5.90 16 25 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.07 0.74 8.12 -2.38 -0.02 0.72 16 27 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 28 H 0.06 1.02 6.47 -2.38 -0.02 1.01 16 29 H 0.07 0.90 8.12 -2.39 -0.02 0.88 16 30 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 0.99 8.06 -2.38 -0.02 0.97 16 32 H 0.04 0.52 8.12 -2.39 -0.02 0.50 16 33 H 0.06 1.13 6.51 -2.39 -0.02 1.12 16 34 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.41 7.00 8.47 -92.71 -0.79 6.21 16 38 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.63 7.96 -2.39 -0.02 1.61 16 40 H 0.07 2.31 8.04 -2.39 -0.02 2.29 16 41 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.00 0.19 7.51 -2.39 -0.02 0.17 16 43 H 0.01 0.76 7.39 -2.38 -0.02 0.75 16 44 H 0.25 14.52 8.31 -92.70 -0.77 13.75 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.02 0.63 7.90 -2.39 -0.02 0.61 16 Total: -1.00 -73.04 365.48 -0.49 -73.52 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.15 Total: 12.08 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 6.82 Total: 9.98 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -9.44 Total: -123.89 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.05 Total: -19.42 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -73.04 -0.49 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691153645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.964 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds