Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46908 * 109.46985 * 2 1 4 4 C 1.46907 * 111.00001 * 293.95110 * 3 2 1 5 5 C 1.46902 * 111.00131 * 170.00341 * 3 2 1 6 6 C 1.52990 * 109.47164 * 190.00145 * 5 3 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 H 1.09004 * 112.85490 * 43.79871 * 11 10 9 13 13 C 1.53782 * 113.61548 * 174.99850 * 11 10 9 14 14 C 1.53788 * 87.08118 * 139.97841 * 13 11 10 15 15 H 1.08994 * 113.61183 * 220.01774 * 14 13 11 16 16 N 1.46507 * 113.61219 * 89.20104 * 14 13 11 17 17 C 1.36938 * 119.99802 * 154.99950 * 16 14 13 18 18 H 1.07999 * 120.00093 * 0.02562 * 17 16 14 19 19 C 1.38806 * 119.99805 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99988 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46899 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47075 * 120.00200 * 21 19 17 24 24 H 1.48496 * 109.47173 * 239.99944 * 21 19 17 25 25 C 1.53782 * 87.08103 * 334.56651 * 14 13 11 26 26 H 1.09005 * 109.47407 * 60.00246 * 1 2 3 27 27 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47627 * 300.00166 * 1 2 3 29 29 H 1.09005 * 109.47378 * 240.00568 * 2 1 3 30 30 H 1.08997 * 109.47639 * 119.99972 * 2 1 3 31 31 H 1.08999 * 109.47349 * 296.05244 * 4 3 2 32 32 H 1.09006 * 109.46455 * 56.04465 * 4 3 2 33 33 H 1.08998 * 109.47009 * 176.04655 * 4 3 2 34 34 H 1.08998 * 109.47355 * 69.99504 * 5 3 2 35 35 H 1.09011 * 109.46634 * 309.99945 * 5 3 2 36 36 H 1.08998 * 109.47508 * 59.99453 * 6 5 3 37 37 H 1.09002 * 109.47337 * 299.99738 * 6 5 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 40 40 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 41 41 H 1.09000 * 113.61210 * 254.52416 * 13 11 10 42 42 H 1.08999 * 113.61551 * 25.34682 * 13 11 10 43 43 H 0.96997 * 119.99833 * 334.99277 * 16 14 13 44 44 H 0.96998 * 120.00291 * 180.02562 * 20 19 17 45 45 H 1.08995 * 113.61722 * 270.88347 * 25 14 13 46 46 H 1.09001 * 113.60922 * 139.97720 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6701 2.0670 -1.2534 5 6 3.4684 1.4313 0.2381 6 6 3.8997 2.8792 0.4790 7 6 5.3860 2.9266 0.7239 8 8 6.0361 1.9028 0.7077 9 7 5.9925 4.1064 0.9619 10 6 7.4383 4.1531 1.1938 11 6 7.8704 5.6016 1.4300 12 1 7.1965 6.1413 2.0954 13 6 9.3546 5.7484 1.8048 14 6 9.3781 6.9936 0.9025 15 1 10.2874 7.0853 0.3086 16 7 9.0285 8.2322 1.6025 17 6 9.4781 9.4362 1.1297 18 1 10.0901 9.4727 0.2406 19 6 9.1464 10.6097 1.7926 20 7 8.4001 10.5653 2.8759 21 14 9.7603 12.2520 1.1481 22 1 10.5745 12.0311 -0.0740 23 1 8.6007 13.1197 0.8196 24 1 10.5932 12.9110 2.1859 25 6 8.2028 6.3639 0.1363 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.1768 1.5791 -2.0860 32 1 0.5918 2.0179 -1.4052 33 1 1.9823 3.1099 -1.1988 34 1 3.9924 1.0360 -0.6321 35 1 3.7121 0.8290 1.1134 36 1 3.3757 3.2744 1.3492 37 1 3.6560 3.4814 -0.3962 38 1 5.4725 4.9251 0.9751 39 1 7.6853 3.5529 2.0696 40 1 7.9591 3.7560 0.3226 41 1 9.5187 5.9702 2.8593 42 1 9.9794 4.9325 1.4416 43 1 8.4784 8.1995 2.4008 44 1 8.1680 11.3854 3.3389 45 1 8.5130 5.7170 -0.6842 46 1 7.4371 7.0826 -0.1560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691530183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = -12.250324 kcal Electronic energy + Delta-G solvation = -21803.430744 eV Core-core repulsion = 18535.639504 eV Total energy + Delta-G solvation = -3267.791240 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.92232 -38.64020 -37.89319 -34.64848 -33.22998 -32.63306 -30.33594 -29.70321 -27.63474 -26.56783 -25.07245 -23.86201 -23.04230 -21.65675 -21.11620 -20.26271 -18.41496 -17.47407 -17.12794 -16.27907 -16.01242 -15.62643 -15.38988 -14.96730 -14.54101 -14.39731 -14.07163 -13.86537 -13.55540 -13.30036 -12.91450 -12.86626 -12.45764 -12.30571 -12.16888 -12.10145 -11.93184 -11.63121 -11.40548 -11.20966 -11.13294 -11.05413 -10.87596 -10.50125 -10.18100 -10.10804 -9.77325 -9.71590 -9.46278 -8.99228 -8.90312 -8.68590 -7.02304 -5.83104 -3.12179 2.62762 3.08983 3.39851 3.45895 3.48004 3.72456 4.53708 4.58265 4.63863 4.80222 4.85608 4.90684 5.04972 5.09397 5.12064 5.15990 5.20233 5.23225 5.31340 5.43358 5.47274 5.58455 5.61551 5.65085 5.66942 5.69840 5.72621 5.86155 5.88766 5.95720 6.09880 6.19809 6.35862 6.43168 6.58213 6.70341 6.71346 6.72622 6.88795 7.02509 7.52032 7.67405 8.21650 8.36097 9.46854 10.04368 10.38595 11.39365 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.002376 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.050005 B =11779.840069 C =12387.860749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.016 3.984 5 C 0.071 3.929 6 C -0.139 4.139 7 C 0.511 3.489 8 O -0.551 6.551 9 N -0.724 5.724 10 C 0.130 3.870 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.148 4.148 14 C 0.167 3.833 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.242 4.242 18 H 0.073 0.927 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.168 4.168 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.042 0.958 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.067 0.933 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -18.788 -5.994 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.270 5.270 4 C -0.132 4.132 5 C -0.057 4.057 6 C -0.179 4.179 7 C 0.297 3.703 8 O -0.429 6.429 9 N -0.375 5.375 10 C 0.007 3.993 11 C -0.138 4.138 12 H 0.111 0.889 13 C -0.188 4.188 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.344 5.344 17 C -0.373 4.373 18 H 0.091 0.909 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.209 4.209 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.237 0.763 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.667 -19.097 -5.694 23.613 hybrid contribution 0.180 0.954 -0.696 1.194 sum -12.488 -18.143 -6.390 22.933 Atomic orbital electron populations 1.21809 0.94784 1.01550 1.02530 1.22081 0.96100 0.88649 1.00954 1.62009 1.13928 1.16115 1.34914 1.22514 1.01533 0.99475 0.89700 1.21802 0.86419 0.95587 1.01858 1.21635 0.92432 0.99173 1.04664 1.20612 0.89940 0.83481 0.76238 1.90690 1.67042 1.33627 1.51533 1.46099 1.09892 1.09291 1.72232 1.21470 0.79469 0.97412 1.00922 1.22710 0.97859 0.93287 0.99953 0.88881 1.23446 0.94358 0.99693 1.01290 1.21056 0.94955 0.85872 0.92643 0.91987 1.42176 1.60972 1.00311 1.30964 1.19339 1.25857 0.84152 1.07936 0.90929 1.24770 1.00539 0.97919 0.97723 1.69669 1.41553 1.26954 1.19862 0.86095 0.77928 0.84105 0.77922 1.20496 1.21843 1.21822 1.23885 1.02293 0.99323 0.95423 0.92664 0.92319 0.91758 0.94891 0.90664 0.95586 0.91073 0.91055 0.93971 0.89968 0.87975 0.88904 0.76264 0.91895 0.91700 0.91331 0.90490 0.78113 0.93479 0.91452 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.84 37.15 0.37 -0.56 16 2 C 0.05 0.38 5.68 -3.82 -0.02 0.36 16 3 N -0.55 -4.71 4.76 -242.91 -1.16 -5.87 16 4 C 0.02 0.12 9.13 60.07 0.55 0.67 16 5 C 0.07 0.70 4.25 -3.83 -0.02 0.68 16 6 C -0.14 -1.28 5.62 -27.89 -0.16 -1.44 16 7 C 0.51 6.39 7.83 -10.98 -0.09 6.30 16 8 O -0.55 -8.91 15.98 5.55 0.09 -8.82 16 9 N -0.72 -8.60 5.56 -60.30 -0.33 -8.93 16 10 C 0.13 1.74 5.51 -4.04 -0.02 1.72 16 11 C -0.12 -1.75 3.63 -89.80 -0.33 -2.08 16 12 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 13 C -0.15 -2.35 7.39 -25.91 -0.19 -2.55 16 14 C 0.17 3.22 4.56 -67.11 -0.31 2.91 16 15 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 16 N -0.71 -17.20 5.31 -52.63 -0.28 -17.48 16 17 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 18 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 C -0.17 -2.75 7.43 -25.91 -0.19 -2.94 16 26 H 0.05 0.33 6.47 -51.93 -0.34 -0.01 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.03 0.25 8.12 -51.93 -0.42 -0.17 16 30 H 0.07 0.56 7.93 -51.93 -0.41 0.15 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.46 6.30 -51.93 -0.33 0.13 16 33 H 0.07 0.49 6.47 -51.93 -0.34 0.16 16 34 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.08 0.87 7.89 -51.92 -0.41 0.46 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.73 6.55 -51.93 -0.34 0.39 16 38 H 0.40 4.09 8.47 -40.82 -0.35 3.74 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.90 7.84 -51.93 -0.41 0.49 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.38 9.91 7.90 -40.82 -0.32 9.59 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.07 1.00 7.90 -51.93 -0.41 0.59 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -31.25 369.29 -9.33 -40.57 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -8.26 Total: 8.98 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.65 Total: -4.15 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: -1.05 Total: -59.17 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.25 -9.33 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691530183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.322 kcal (2) G-P(sol) polarization free energy of solvation -31.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds