Wall clock time and date at job start Wed Apr 15 2020 11:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46908 * 109.46985 * 2 1 4 4 C 1.46907 * 111.00001 * 293.95110 * 3 2 1 5 5 C 1.46902 * 111.00131 * 170.00341 * 3 2 1 6 6 C 1.52990 * 109.47164 * 190.00145 * 5 3 2 7 7 C 1.50703 * 109.47398 * 179.97438 * 6 5 3 8 8 O 1.21283 * 119.99488 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00290 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27728 * 9 7 6 11 11 C 1.52996 * 109.47059 * 179.72339 * 10 9 7 12 12 H 1.09004 * 112.85490 * 43.79871 * 11 10 9 13 13 C 1.53782 * 113.61548 * 174.99850 * 11 10 9 14 14 C 1.53788 * 87.08118 * 139.97841 * 13 11 10 15 15 H 1.08994 * 113.61183 * 220.01774 * 14 13 11 16 16 N 1.46507 * 113.61219 * 89.20104 * 14 13 11 17 17 C 1.36938 * 119.99802 * 154.99950 * 16 14 13 18 18 H 1.07999 * 120.00093 * 0.02562 * 17 16 14 19 19 C 1.38806 * 119.99805 * 179.97438 * 17 16 14 20 20 N 1.31622 * 120.00175 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99988 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46899 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47075 * 120.00200 * 21 19 17 24 24 H 1.48496 * 109.47173 * 239.99944 * 21 19 17 25 25 C 1.53782 * 87.08103 * 334.56651 * 14 13 11 26 26 H 1.09005 * 109.47407 * 60.00246 * 1 2 3 27 27 H 1.09001 * 109.47561 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47627 * 300.00166 * 1 2 3 29 29 H 1.09005 * 109.47378 * 240.00568 * 2 1 3 30 30 H 1.08997 * 109.47639 * 119.99972 * 2 1 3 31 31 H 1.08999 * 109.47349 * 296.05244 * 4 3 2 32 32 H 1.09006 * 109.46455 * 56.04465 * 4 3 2 33 33 H 1.08998 * 109.47009 * 176.04655 * 4 3 2 34 34 H 1.08998 * 109.47355 * 69.99504 * 5 3 2 35 35 H 1.09011 * 109.46634 * 309.99945 * 5 3 2 36 36 H 1.08998 * 109.47508 * 59.99453 * 6 5 3 37 37 H 1.09002 * 109.47337 * 299.99738 * 6 5 3 38 38 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 39 39 H 1.09004 * 109.46963 * 299.72135 * 10 9 7 40 40 H 1.08994 * 109.47567 * 59.72287 * 10 9 7 41 41 H 1.09000 * 113.61210 * 254.52416 * 13 11 10 42 42 H 1.08999 * 113.61551 * 25.34682 * 13 11 10 43 43 H 0.96997 * 119.99833 * 334.99277 * 16 14 13 44 44 H 0.96998 * 120.00291 * 180.02562 * 20 19 17 45 45 H 1.08995 * 113.61722 * 270.88347 * 25 14 13 46 46 H 1.09001 * 113.60922 * 139.97720 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.6701 2.0670 -1.2534 5 6 3.4684 1.4313 0.2381 6 6 3.8997 2.8792 0.4790 7 6 5.3860 2.9266 0.7239 8 8 6.0361 1.9028 0.7077 9 7 5.9925 4.1064 0.9619 10 6 7.4383 4.1531 1.1938 11 6 7.8704 5.6016 1.4300 12 1 7.1965 6.1413 2.0954 13 6 9.3546 5.7484 1.8048 14 6 9.3781 6.9936 0.9025 15 1 10.2874 7.0853 0.3086 16 7 9.0285 8.2322 1.6025 17 6 9.4781 9.4362 1.1297 18 1 10.0901 9.4727 0.2406 19 6 9.1464 10.6097 1.7926 20 7 8.4001 10.5653 2.8759 21 14 9.7603 12.2520 1.1481 22 1 10.5745 12.0311 -0.0740 23 1 8.6007 13.1197 0.8196 24 1 10.5932 12.9110 2.1859 25 6 8.2028 6.3639 0.1363 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 2.1768 1.5791 -2.0860 32 1 0.5918 2.0179 -1.4052 33 1 1.9823 3.1099 -1.1988 34 1 3.9924 1.0360 -0.6321 35 1 3.7121 0.8290 1.1134 36 1 3.3757 3.2744 1.3492 37 1 3.6560 3.4814 -0.3962 38 1 5.4725 4.9251 0.9751 39 1 7.6853 3.5529 2.0696 40 1 7.9591 3.7560 0.3226 41 1 9.5187 5.9702 2.8593 42 1 9.9794 4.9325 1.4416 43 1 8.4784 8.1995 2.4008 44 1 8.1680 11.3854 3.3389 45 1 8.5130 5.7170 -0.6842 46 1 7.4371 7.0826 -0.1560 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691530183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:58 Heat of formation + Delta-G solvation = -34.129879 kcal Electronic energy + Delta-G solvation = -21804.379513 eV Core-core repulsion = 18535.639504 eV Total energy + Delta-G solvation = -3268.740009 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97811 -39.93315 -38.64322 -35.99537 -34.93580 -33.38107 -32.06604 -30.52816 -28.72769 -27.38578 -26.43266 -25.68992 -23.99736 -22.89657 -21.80532 -21.23086 -19.80870 -19.32482 -18.19202 -17.16210 -17.04201 -16.67073 -16.38641 -16.25665 -15.83943 -15.53853 -15.19019 -15.08720 -14.65229 -14.52301 -14.38247 -13.76964 -13.61447 -13.28521 -13.08931 -12.94647 -12.91388 -12.80167 -12.68999 -12.62526 -12.28164 -12.12836 -12.04144 -11.86046 -11.75125 -11.54730 -11.47723 -11.04034 -10.89233 -10.70983 -10.04151 -9.35448 -8.99655 -7.95400 -5.23588 1.48423 1.48736 1.58827 1.64648 2.17571 2.55839 3.01388 3.37402 3.71534 3.79718 3.80271 3.86328 3.97548 4.12775 4.15613 4.20708 4.31257 4.33323 4.41702 4.55398 4.58670 4.62026 4.62936 4.73935 4.78262 4.90681 4.92975 4.94429 4.99857 5.01435 5.03775 5.12404 5.13702 5.30298 5.36246 5.37539 5.50352 5.56747 5.66987 6.03330 6.09258 6.28533 6.56925 7.25069 7.33528 8.10655 8.33002 9.27999 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.028104 B = 0.002376 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.050005 B =11779.840069 C =12387.860749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.549 5.549 4 C 0.014 3.986 5 C 0.076 3.924 6 C -0.128 4.128 7 C 0.511 3.489 8 O -0.590 6.590 9 N -0.719 5.719 10 C 0.140 3.860 11 C -0.101 4.101 12 H 0.082 0.918 13 C -0.136 4.136 14 C 0.143 3.857 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.241 4.241 18 H 0.077 0.923 19 C -0.076 4.076 20 N -0.969 5.969 21 Si 0.972 3.028 22 H -0.266 1.266 23 H -0.293 1.293 24 H -0.295 1.295 25 C -0.152 4.152 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.023 0.977 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.069 0.931 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.413 0.587 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 -19.348 -7.103 24.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 N -0.274 5.274 4 C -0.134 4.134 5 C -0.052 4.052 6 C -0.168 4.168 7 C 0.299 3.701 8 O -0.471 6.471 9 N -0.370 5.370 10 C 0.016 3.984 11 C -0.120 4.120 12 H 0.101 0.899 13 C -0.175 4.175 14 C 0.033 3.967 15 H 0.077 0.923 16 N -0.358 5.358 17 C -0.373 4.373 18 H 0.094 0.906 19 C -0.268 4.268 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.191 1.191 23 H -0.221 1.221 24 H -0.222 1.222 25 C -0.193 4.193 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.041 0.959 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.130 0.870 38 H 0.249 0.751 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.109 0.891 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.262 -19.681 -6.842 24.699 hybrid contribution 0.390 1.041 -0.388 1.177 sum -12.871 -18.640 -7.230 23.778 Atomic orbital electron populations 1.21769 0.93579 1.02321 1.02450 1.22157 0.97071 0.88177 1.00783 1.62052 1.12878 1.16785 1.35685 1.22581 1.02214 0.99618 0.88989 1.21688 0.87175 0.95676 1.00676 1.21598 0.89966 0.99188 1.06062 1.21126 0.91072 0.82779 0.75167 1.90676 1.68132 1.34940 1.53337 1.46048 1.09438 1.09776 1.71746 1.21270 0.80399 0.95900 1.00851 1.22487 0.97059 0.93921 0.98540 0.89948 1.23354 0.95639 0.98490 1.00022 1.21389 0.95934 0.85413 0.93973 0.92296 1.42302 1.61062 1.01286 1.31111 1.19707 1.24695 0.85393 1.07496 0.90558 1.25549 1.01616 1.01253 0.98407 1.69814 1.43433 1.27335 1.21342 0.85084 0.77217 0.79953 0.77567 1.19079 1.22070 1.22211 1.23700 1.00103 0.98995 0.96473 0.92268 0.91193 0.92213 0.95040 0.90931 0.95861 0.90038 0.90390 0.95443 0.91237 0.86538 0.86999 0.75096 0.92118 0.91651 0.92430 0.87770 0.79333 0.94026 0.89139 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.84 71.98 0.71 -0.86 16 2 C 0.05 0.65 5.68 86.30 0.49 1.14 16 3 N -0.55 -8.76 4.76 -922.43 -4.39 -13.15 16 4 C 0.01 0.18 9.13 127.69 1.17 1.34 16 5 C 0.08 1.43 4.25 86.30 0.37 1.79 16 6 C -0.13 -2.13 5.62 29.85 0.17 -1.96 16 7 C 0.51 12.04 7.83 87.66 0.69 12.72 16 8 O -0.59 -18.66 15.98 -3.04 -0.05 -18.71 16 9 N -0.72 -15.75 5.56 -463.07 -2.57 -18.32 16 10 C 0.14 3.45 5.51 86.38 0.48 3.92 16 11 C -0.10 -2.82 3.63 -10.27 -0.04 -2.86 16 12 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 13 C -0.14 -4.10 7.39 31.12 0.23 -3.87 16 14 C 0.14 5.38 4.56 45.52 0.21 5.59 16 15 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 16 N -0.72 -35.19 5.31 -320.43 -1.70 -36.89 16 17 C -0.24 -13.14 9.97 84.03 0.84 -12.30 16 18 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 19 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 20 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 21 Si 0.97 45.49 29.55 68.60 2.03 47.52 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 24 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 25 C -0.15 -4.72 7.43 31.12 0.23 -4.49 16 26 H 0.06 0.60 6.47 -2.38 -0.02 0.58 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.03 0.45 8.12 -2.38 -0.02 0.43 16 30 H 0.07 1.05 7.93 -2.39 -0.02 1.03 16 31 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.89 6.30 -2.38 -0.02 0.87 16 33 H 0.08 0.90 6.47 -2.39 -0.02 0.88 16 34 H 0.03 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.07 1.46 7.89 -2.38 -0.02 1.44 16 36 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.47 6.55 -2.39 -0.02 1.45 16 38 H 0.41 7.53 8.47 -92.71 -0.79 6.74 16 39 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.07 1.65 7.84 -2.39 -0.02 1.64 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.10 2.60 8.10 -2.39 -0.02 2.59 16 43 H 0.37 19.60 7.90 -92.71 -0.73 18.87 16 44 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.09 2.42 7.90 -2.39 -0.02 2.40 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -66.98 369.29 -0.97 -67.95 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: -0.56 Total: 33.24 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 6.00 Total: -3.67 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -8.39 Total: -126.34 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.71 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -66.98 -0.97 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691530183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.821 kcal (2) G-P(sol) polarization free energy of solvation -66.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds