Wall clock time and date at job start Wed Apr 15 2020 11:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47339 * 119.99748 * 2 1 3 5 5 C 1.46897 * 110.99883 * 298.95595 * 4 2 1 6 6 C 1.46889 * 111.00059 * 174.99739 * 4 2 1 7 7 C 1.50706 * 109.47109 * 190.00199 * 6 4 2 8 8 O 1.21281 * 119.99699 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00080 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 H 1.08998 * 112.84967 * 316.19646 * 11 10 9 13 13 C 1.53789 * 113.61152 * 87.50111 * 11 10 9 14 14 C 1.53780 * 87.07735 * 139.98241 * 13 11 10 15 15 H 1.09004 * 113.61395 * 220.01775 * 14 13 11 16 16 N 1.46497 * 113.69220 * 89.12741 * 14 13 11 17 17 C 1.36940 * 120.00130 * 107.46406 * 16 14 13 18 18 H 1.07996 * 119.99500 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00124 * 180.02562 * 17 16 14 20 20 N 1.31625 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46954 * 59.99926 * 21 19 17 23 23 H 1.48502 * 109.46801 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47125 * 299.99594 * 21 19 17 25 25 C 1.53781 * 87.08381 * 334.56357 * 14 13 11 26 26 H 1.09002 * 109.46918 * 300.00336 * 1 2 3 27 27 H 1.08998 * 109.46749 * 59.99986 * 1 2 3 28 28 H 1.08995 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47560 * 240.00004 * 2 1 3 30 30 H 1.08998 * 109.46694 * 59.99474 * 3 2 1 31 31 H 1.08991 * 109.47107 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46409 * 300.00013 * 3 2 1 33 33 H 1.09002 * 109.47100 * 296.04283 * 5 4 2 34 34 H 1.09006 * 109.47354 * 56.03832 * 5 4 2 35 35 H 1.08997 * 109.47012 * 176.04034 * 5 4 2 36 36 H 1.09004 * 109.47256 * 70.00566 * 6 4 2 37 37 H 1.08998 * 109.47820 * 310.00376 * 6 4 2 38 38 H 0.97005 * 120.00161 * 359.72088 * 9 7 6 39 39 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 40 40 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 41 41 H 1.09001 * 113.60999 * 254.52627 * 13 11 10 42 42 H 1.09003 * 113.61481 * 25.43474 * 13 11 10 43 43 H 0.96998 * 120.00086 * 287.46401 * 16 14 13 44 44 H 0.97002 * 120.00023 * 180.02562 * 20 19 17 45 45 H 1.08997 * 113.61636 * 270.88696 * 25 14 13 46 46 H 1.08997 * 113.61300 * 139.97975 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5692 -0.0120 2.4209 6 6 3.4832 -0.8165 1.1751 7 6 3.9279 -1.7365 2.2828 8 8 3.1065 -2.2390 3.0202 9 7 5.2384 -2.0001 2.4546 10 6 5.6706 -2.8950 3.5311 11 6 7.1944 -3.0291 3.5019 12 1 7.5883 -3.1628 2.4944 13 6 7.9239 -1.9440 4.3116 14 6 8.8861 -3.0495 4.7772 15 1 9.1662 -2.9706 5.8277 16 7 10.0394 -3.2369 3.8935 17 6 11.2822 -2.8231 4.2927 18 1 11.4121 -2.3583 5.2588 19 6 12.3749 -3.0001 3.4551 20 7 12.2165 -3.5662 2.2774 21 14 14.0702 -2.4350 3.9994 22 1 14.4534 -3.1476 5.2445 23 1 15.0585 -2.7365 2.9328 24 1 14.0464 -0.9721 4.2535 25 6 7.7430 -4.0449 4.5177 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 2.0053 0.9861 2.4627 34 1 0.4820 0.0666 2.4132 35 1 1.8860 -0.5837 3.2932 36 1 3.9335 0.1661 1.3162 37 1 3.7973 -1.2256 0.2149 38 1 5.8951 -1.6008 1.8627 39 1 5.3603 -2.4839 4.4917 40 1 5.2167 -3.8762 3.3922 41 1 8.3997 -1.1833 3.6927 42 1 7.3224 -1.5212 5.1163 43 1 9.9226 -3.6540 3.0256 44 1 12.9802 -3.6902 1.6923 45 1 7.0920 -4.1964 5.3788 46 1 8.0727 -4.9801 4.0653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691540670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:01 Heat of formation + Delta-G solvation = -1.385952 kcal Electronic energy + Delta-G solvation = -22272.415345 eV Core-core repulsion = 19005.095219 eV Total energy + Delta-G solvation = -3267.320125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07647 -38.78037 -37.85963 -34.60141 -33.20972 -32.18309 -30.27153 -28.86503 -27.58982 -26.83842 -25.08575 -24.94100 -23.60863 -21.69402 -20.55864 -19.87123 -18.40304 -17.43321 -17.11934 -16.42187 -15.88022 -15.62163 -15.09158 -14.80211 -14.55278 -14.30425 -13.89368 -13.84695 -13.46591 -13.28575 -13.10296 -12.89856 -12.42321 -12.31028 -12.16124 -11.93262 -11.77094 -11.63867 -11.47000 -11.32375 -11.05756 -11.03179 -10.84491 -10.49649 -10.22357 -10.07298 -9.71193 -9.70166 -9.44710 -8.96140 -8.89125 -8.48606 -7.02310 -5.82790 -3.11927 2.66992 3.03835 3.40789 3.45370 3.46238 3.81875 4.53157 4.53840 4.63628 4.76749 4.91409 4.96832 5.06199 5.06899 5.11315 5.21724 5.24397 5.30811 5.35544 5.42600 5.43579 5.55352 5.61955 5.62721 5.70621 5.79094 5.86816 5.91513 5.96393 6.03261 6.11043 6.20526 6.36487 6.46442 6.59115 6.70368 6.73346 6.84270 6.89731 7.02986 7.56945 7.66487 8.28939 8.36511 9.47030 10.04645 10.38858 11.39575 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.002592 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.373079 B =10798.568779 C =11315.860978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.074 3.926 3 C -0.190 4.190 4 N -0.517 5.517 5 C 0.012 3.988 6 C 0.033 3.967 7 C 0.511 3.489 8 O -0.529 6.529 9 N -0.727 5.727 10 C 0.133 3.867 11 C -0.119 4.119 12 H 0.093 0.907 13 C -0.168 4.168 14 C 0.167 3.833 15 H 0.062 0.938 16 N -0.706 5.706 17 C -0.243 4.243 18 H 0.072 0.928 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.148 4.148 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.023 0.977 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.401 0.599 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.077 0.923 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 7.882 -3.967 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.249 4.249 4 N -0.240 5.240 5 C -0.135 4.135 6 C -0.098 4.098 7 C 0.296 3.704 8 O -0.405 6.405 9 N -0.379 5.379 10 C 0.010 3.990 11 C -0.138 4.138 12 H 0.111 0.889 13 C -0.209 4.209 14 C 0.055 3.945 15 H 0.080 0.920 16 N -0.344 5.344 17 C -0.374 4.374 18 H 0.090 0.910 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.188 4.188 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.505 7.080 -3.345 22.886 hybrid contribution 1.625 1.256 -0.474 2.108 sum -19.880 8.335 -3.819 21.893 Atomic orbital electron populations 1.21857 0.94018 1.02644 1.01666 1.21783 0.96138 0.92303 0.93203 1.22520 1.01518 0.98243 1.02602 1.61914 1.08276 1.51307 1.02543 1.22637 1.01011 0.96430 0.93462 1.22003 0.90018 0.98752 0.99051 1.20478 0.82334 0.82102 0.85485 1.90657 1.52134 1.51489 1.46245 1.46076 1.07312 1.49744 1.34760 1.21445 0.94662 0.93206 0.89709 1.22709 0.91743 0.99457 0.99895 0.88917 1.23885 0.99553 0.98168 0.99312 1.21054 0.86523 0.92313 0.94627 0.92010 1.42161 1.02561 1.71374 1.18321 1.19246 0.84859 1.32508 1.00776 0.91049 1.24765 0.98115 1.01455 0.96543 1.69652 1.30226 1.48784 1.09454 0.86242 0.84025 0.78363 0.77396 1.21181 1.21673 1.21227 1.23443 0.98957 0.98206 0.98167 0.92423 0.92229 0.91679 0.89865 0.92151 0.92479 0.91909 0.95858 0.91195 0.89418 0.91761 0.87959 0.76486 0.91742 0.91892 0.91570 0.91454 0.78113 0.93378 0.90476 0.91329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.00 37.16 0.33 -0.69 16 2 C 0.07 0.58 2.96 -67.71 -0.20 0.38 16 3 C -0.19 -1.30 8.50 37.16 0.32 -0.98 16 4 N -0.52 -5.30 4.49 -236.33 -1.06 -6.36 16 5 C 0.01 0.12 8.40 60.06 0.50 0.63 16 6 C 0.03 0.32 4.89 -4.98 -0.02 0.29 16 7 C 0.51 6.52 7.56 -10.98 -0.08 6.44 16 8 O -0.53 -8.66 14.31 5.56 0.08 -8.58 16 9 N -0.73 -8.64 5.56 -60.29 -0.33 -8.97 16 10 C 0.13 1.77 5.51 -4.04 -0.02 1.75 16 11 C -0.12 -1.75 3.63 -89.80 -0.33 -2.08 16 12 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.17 -2.75 7.43 -25.91 -0.19 -2.94 16 14 C 0.17 3.22 4.56 -67.12 -0.31 2.92 16 15 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 16 N -0.71 -17.21 5.31 -52.64 -0.28 -17.49 16 17 C -0.24 -6.62 9.97 -15.06 -0.15 -6.77 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.63 13.06 55.49 0.72 -26.91 16 21 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 25 C -0.15 -2.36 7.39 -25.92 -0.19 -2.55 16 26 H 0.06 0.41 6.34 -51.93 -0.33 0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 30 H 0.06 0.43 6.47 -51.93 -0.34 0.10 16 31 H 0.06 0.39 6.75 -51.93 -0.35 0.04 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.21 6.51 -51.93 -0.34 -0.13 16 34 H 0.07 0.64 6.13 -51.93 -0.32 0.32 16 35 H 0.09 1.11 5.88 -51.93 -0.31 0.81 16 36 H 0.06 0.54 6.94 -51.93 -0.36 0.18 16 37 H 0.10 0.83 8.00 -51.93 -0.42 0.41 16 38 H 0.40 4.05 8.47 -40.82 -0.35 3.70 16 39 H 0.06 0.89 7.84 -51.93 -0.41 0.49 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.07 0.99 7.90 -51.93 -0.41 0.58 16 43 H 0.38 9.91 7.90 -40.82 -0.32 9.59 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -31.28 361.38 -8.89 -40.17 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -8.00 Total: 9.75 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.44 Total: -4.05 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.95 Total: -59.73 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.28 -8.89 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691540670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.781 kcal (2) G-P(sol) polarization free energy of solvation -31.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds