Wall clock time and date at job start Wed Apr 15 2020 11:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47339 * 119.99748 * 2 1 3 5 5 C 1.46897 * 110.99883 * 298.95595 * 4 2 1 6 6 C 1.46889 * 111.00059 * 174.99739 * 4 2 1 7 7 C 1.50706 * 109.47109 * 190.00199 * 6 4 2 8 8 O 1.21281 * 119.99699 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00080 * 180.02562 * 7 6 4 10 10 C 1.46506 * 119.99969 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47237 * 179.72043 * 10 9 7 12 12 H 1.08998 * 112.84967 * 316.19646 * 11 10 9 13 13 C 1.53789 * 113.61152 * 87.50111 * 11 10 9 14 14 C 1.53780 * 87.07735 * 139.98241 * 13 11 10 15 15 H 1.09004 * 113.61395 * 220.01775 * 14 13 11 16 16 N 1.46497 * 113.69220 * 89.12741 * 14 13 11 17 17 C 1.36940 * 120.00130 * 107.46406 * 16 14 13 18 18 H 1.07996 * 119.99500 * 359.97438 * 17 16 14 19 19 C 1.38804 * 120.00124 * 180.02562 * 17 16 14 20 20 N 1.31625 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00032 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46954 * 59.99926 * 21 19 17 23 23 H 1.48502 * 109.46801 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47125 * 299.99594 * 21 19 17 25 25 C 1.53781 * 87.08381 * 334.56357 * 14 13 11 26 26 H 1.09002 * 109.46918 * 300.00336 * 1 2 3 27 27 H 1.08998 * 109.46749 * 59.99986 * 1 2 3 28 28 H 1.08995 * 109.47470 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47560 * 240.00004 * 2 1 3 30 30 H 1.08998 * 109.46694 * 59.99474 * 3 2 1 31 31 H 1.08991 * 109.47107 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46409 * 300.00013 * 3 2 1 33 33 H 1.09002 * 109.47100 * 296.04283 * 5 4 2 34 34 H 1.09006 * 109.47354 * 56.03832 * 5 4 2 35 35 H 1.08997 * 109.47012 * 176.04034 * 5 4 2 36 36 H 1.09004 * 109.47256 * 70.00566 * 6 4 2 37 37 H 1.08998 * 109.47820 * 310.00376 * 6 4 2 38 38 H 0.97005 * 120.00161 * 359.72088 * 9 7 6 39 39 H 1.09001 * 109.46512 * 299.72412 * 10 9 7 40 40 H 1.08998 * 109.47174 * 59.71534 * 10 9 7 41 41 H 1.09001 * 113.60999 * 254.52627 * 13 11 10 42 42 H 1.09003 * 113.61481 * 25.43474 * 13 11 10 43 43 H 0.96998 * 120.00086 * 287.46401 * 16 14 13 44 44 H 0.97002 * 120.00023 * 180.02562 * 20 19 17 45 45 H 1.08997 * 113.61636 * 270.88696 * 25 14 13 46 46 H 1.08997 * 113.61300 * 139.97975 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5692 -0.0120 2.4209 6 6 3.4832 -0.8165 1.1751 7 6 3.9279 -1.7365 2.2828 8 8 3.1065 -2.2390 3.0202 9 7 5.2384 -2.0001 2.4546 10 6 5.6706 -2.8950 3.5311 11 6 7.1944 -3.0291 3.5019 12 1 7.5883 -3.1628 2.4944 13 6 7.9239 -1.9440 4.3116 14 6 8.8861 -3.0495 4.7772 15 1 9.1662 -2.9706 5.8277 16 7 10.0394 -3.2369 3.8935 17 6 11.2822 -2.8231 4.2927 18 1 11.4121 -2.3583 5.2588 19 6 12.3749 -3.0001 3.4551 20 7 12.2165 -3.5662 2.2774 21 14 14.0702 -2.4350 3.9994 22 1 14.4534 -3.1476 5.2445 23 1 15.0585 -2.7365 2.9328 24 1 14.0464 -0.9721 4.2535 25 6 7.7430 -4.0449 4.5177 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 2.0053 0.9861 2.4627 34 1 0.4820 0.0666 2.4132 35 1 1.8860 -0.5837 3.2932 36 1 3.9335 0.1661 1.3162 37 1 3.7973 -1.2256 0.2149 38 1 5.8951 -1.6008 1.8627 39 1 5.3603 -2.4839 4.4917 40 1 5.2167 -3.8762 3.3922 41 1 8.3997 -1.1833 3.6927 42 1 7.3224 -1.5212 5.1163 43 1 9.9226 -3.6540 3.0256 44 1 12.9802 -3.6902 1.6923 45 1 7.0920 -4.1964 5.3788 46 1 8.0727 -4.9801 4.0653 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691540670.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:01 Heat of formation + Delta-G solvation = -23.490487 kcal Electronic energy + Delta-G solvation = -22273.373869 eV Core-core repulsion = 19005.095219 eV Total energy + Delta-G solvation = -3268.278650 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.06500 -40.03797 -38.74698 -35.95407 -34.91834 -32.89150 -32.06613 -29.86447 -28.38776 -27.71767 -26.43108 -26.02556 -25.32043 -23.03328 -21.53542 -20.56085 -19.80687 -19.32183 -18.11710 -17.38600 -16.82034 -16.66764 -16.48400 -15.97725 -15.75270 -15.52694 -15.17716 -14.91329 -14.61333 -14.44816 -14.16192 -13.88765 -13.77056 -13.30548 -12.97493 -12.94316 -12.91006 -12.84970 -12.62282 -12.42898 -12.32330 -12.19823 -12.06735 -12.04209 -11.62189 -11.52715 -11.46959 -10.97653 -10.86203 -10.64416 -10.00594 -9.20998 -8.99697 -7.95090 -5.23402 1.48248 1.50669 1.56773 1.69213 2.13303 2.56072 3.06595 3.37351 3.70658 3.76764 3.80979 3.96123 3.96593 4.15729 4.17872 4.24337 4.32753 4.34250 4.42114 4.44561 4.53789 4.62631 4.74063 4.77660 4.80054 4.85994 4.93283 4.99112 5.00120 5.06986 5.09032 5.12936 5.30263 5.33691 5.37225 5.39428 5.50883 5.58588 5.67140 5.98509 6.16602 6.28575 6.63194 7.32263 7.33585 8.10821 8.33229 9.27959 Molecular weight = 283.20amu Principal moments of inertia in cm(-1) A = 0.029580 B = 0.002592 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.373079 B =10798.568779 C =11315.860978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 C -0.185 4.185 4 N -0.536 5.536 5 C 0.018 3.982 6 C 0.038 3.962 7 C 0.508 3.492 8 O -0.568 6.568 9 N -0.721 5.721 10 C 0.143 3.857 11 C -0.101 4.101 12 H 0.082 0.918 13 C -0.152 4.152 14 C 0.143 3.857 15 H 0.059 0.941 16 N -0.719 5.719 17 C -0.243 4.243 18 H 0.076 0.924 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.973 3.027 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.278 1.278 25 C -0.136 4.136 26 H 0.055 0.945 27 H 0.075 0.925 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.121 0.879 38 H 0.411 0.589 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.090 0.910 43 H 0.374 0.626 44 H 0.251 0.749 45 H 0.104 0.896 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.717 9.083 -4.016 23.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.035 4.035 3 C -0.244 4.244 4 N -0.260 5.260 5 C -0.129 4.129 6 C -0.093 4.093 7 C 0.295 3.705 8 O -0.447 6.447 9 N -0.374 5.374 10 C 0.019 3.981 11 C -0.120 4.120 12 H 0.100 0.900 13 C -0.192 4.192 14 C 0.033 3.967 15 H 0.077 0.923 16 N -0.358 5.358 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.802 3.198 22 H -0.205 1.205 23 H -0.222 1.222 24 H -0.204 1.204 25 C -0.175 4.175 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.051 0.949 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.139 0.861 38 H 0.247 0.753 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.108 0.892 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.122 0.878 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.344 8.309 -3.370 24.076 hybrid contribution 1.798 0.876 -0.406 2.041 sum -20.547 9.185 -3.776 22.821 Atomic orbital electron populations 1.21845 0.93598 1.02131 1.02394 1.21859 0.96496 0.92837 0.92281 1.22467 1.01513 0.97427 1.02973 1.61891 1.08626 1.52261 1.03246 1.22512 1.01446 0.96320 0.92669 1.22022 0.90023 0.98793 0.98481 1.21047 0.81931 0.81866 0.85621 1.90646 1.53109 1.53123 1.47837 1.46018 1.07566 1.49293 1.34474 1.21227 0.93158 0.93421 0.90261 1.22486 0.92611 0.97975 0.98913 0.89961 1.23698 0.98666 0.97142 0.99735 1.21382 0.86334 0.95280 0.93662 0.92330 1.42289 1.03280 1.71593 1.18612 1.19631 0.86129 1.31125 1.00631 0.90614 1.25547 1.01701 1.02593 0.96884 1.69804 1.30753 1.50769 1.10620 0.85226 0.79636 0.78171 0.76811 1.20495 1.22248 1.20389 1.23352 0.97656 0.97120 0.99380 0.92588 0.90610 0.92796 0.89285 0.92570 0.92390 0.90732 0.94899 0.90579 0.92147 0.90069 0.86093 0.75303 0.91729 0.92280 0.93258 0.89160 0.79337 0.94000 0.87793 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.00 71.98 0.65 -1.13 16 2 C 0.07 1.00 2.96 44.92 0.13 1.14 16 3 C -0.19 -2.09 8.50 71.98 0.61 -1.47 16 4 N -0.54 -10.24 4.49 -901.61 -4.05 -14.28 16 5 C 0.02 0.36 8.40 127.69 1.07 1.43 16 6 C 0.04 0.66 4.89 85.56 0.42 1.07 16 7 C 0.51 12.34 7.56 87.66 0.66 13.00 16 8 O -0.57 -18.35 14.31 -3.03 -0.04 -18.39 16 9 N -0.72 -15.99 5.56 -463.05 -2.57 -18.57 16 10 C 0.14 3.57 5.51 86.38 0.48 4.05 16 11 C -0.10 -2.83 3.63 -10.26 -0.04 -2.87 16 12 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 13 C -0.15 -4.74 7.43 31.12 0.23 -4.51 16 14 C 0.14 5.42 4.56 45.52 0.21 5.63 16 15 H 0.06 2.23 8.10 -2.38 -0.02 2.21 16 16 N -0.72 -35.29 5.31 -320.46 -1.70 -36.99 16 17 C -0.24 -13.28 9.97 84.03 0.84 -12.44 16 18 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 19 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 20 N -0.97 -58.29 13.06 21.65 0.28 -58.00 16 21 Si 0.97 45.43 29.55 68.60 2.03 47.46 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 26 H 0.06 0.71 6.34 -2.39 -0.02 0.70 16 27 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 1.12 8.03 -2.39 -0.02 1.10 16 30 H 0.06 0.69 6.47 -2.39 -0.02 0.67 16 31 H 0.06 0.64 6.75 -2.39 -0.02 0.63 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.03 0.56 6.51 -2.39 -0.02 0.54 16 34 H 0.08 1.34 6.13 -2.38 -0.01 1.33 16 35 H 0.06 1.53 5.88 -2.39 -0.01 1.52 16 36 H 0.08 1.16 6.94 -2.39 -0.02 1.14 16 37 H 0.12 1.65 8.00 -2.39 -0.02 1.63 16 38 H 0.41 7.55 8.47 -92.70 -0.79 6.76 16 39 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.09 2.43 7.90 -2.39 -0.02 2.41 16 43 H 0.37 19.64 7.90 -92.71 -0.73 18.91 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.10 2.63 8.10 -2.39 -0.02 2.61 16 46 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -67.42 361.38 -0.65 -68.07 By element: Atomic # 1 Polarization: 35.04 SS G_CDS: -0.55 Total: 34.49 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.96 Total: -3.78 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -8.04 Total: -127.85 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.04 Total: -18.39 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -67.42 -0.65 -68.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691540670.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.578 kcal (2) G-P(sol) polarization free energy of solvation -67.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds