Wall clock time and date at job start Wed Apr 15 2020 11:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38163 * 119.97989 * 2 1 4 4 C 1.38701 * 119.95399 * 180.02562 * 3 2 1 5 5 O 1.35920 * 120.04711 * 180.02562 * 4 3 2 6 6 C 1.42901 * 117.00110 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46990 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00025 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99843 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00242 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99751 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47103 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46832 * 120.00248 * 12 10 8 15 15 H 1.48499 * 109.47151 * 240.00200 * 12 10 8 16 16 C 1.38748 * 119.91061 * 359.97438 * 4 3 2 17 17 C 1.38125 * 119.95415 * 359.97438 * 16 4 3 18 18 C 1.38325 * 119.97338 * 179.97438 * 2 1 3 19 19 Br 1.89095 * 119.95582 * 359.72474 * 18 2 1 20 20 H 1.08998 * 109.47137 * 270.02517 * 1 2 3 21 21 H 1.09007 * 109.47193 * 30.02586 * 1 2 3 22 22 H 1.08997 * 109.47388 * 150.02345 * 1 2 3 23 23 H 1.08001 * 120.02132 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.46918 * 299.99691 * 6 5 4 25 25 H 1.08993 * 109.47185 * 59.99478 * 6 5 4 26 26 H 1.09003 * 109.47183 * 299.99658 * 7 6 5 27 27 H 1.09001 * 109.47371 * 60.00090 * 7 6 5 28 28 H 0.97000 * 119.99723 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.02859 * 180.02562 * 16 4 3 30 30 H 1.07994 * 119.97792 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1968 0.0000 4 6 3.5844 1.1961 -0.0005 5 8 4.2655 2.3724 0.0000 6 6 5.6924 2.2958 -0.0012 7 6 6.2789 3.7089 -0.0010 8 6 7.7838 3.6281 -0.0016 9 1 8.2729 2.6652 -0.0017 10 6 8.5361 4.7836 -0.0021 11 7 7.9405 5.9561 -0.0016 12 14 10.4014 4.6835 -0.0021 13 1 10.8207 3.2589 -0.0022 14 1 10.9332 5.3556 -1.2150 15 1 10.9333 5.3564 1.2101 16 6 4.2757 -0.0068 -0.0005 17 6 3.5817 -1.2011 0.0005 18 6 2.1980 -1.1982 0.0005 19 35 1.2505 -2.8347 0.0091 20 1 -0.3633 0.0005 1.0276 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3634 -0.8902 -0.5134 23 1 1.6574 2.1321 -0.0004 24 1 6.0284 1.7625 0.8881 25 1 6.0270 1.7640 -0.8918 26 1 5.9430 4.2418 -0.8905 27 1 5.9444 4.2411 0.8895 28 1 8.4699 6.7690 -0.0016 29 1 5.3557 -0.0096 -0.0005 30 1 4.1194 -2.1377 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095734263.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:40 Heat of formation + Delta-G solvation = -31.471362 kcal Electronic energy + Delta-G solvation = -14060.515892 eV Core-core repulsion = 11480.661947 eV Total energy + Delta-G solvation = -2579.853945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.98399 -37.57115 -33.49407 -32.66335 -31.84725 -30.37834 -28.58985 -26.86958 -25.00305 -22.55779 -21.73227 -20.30432 -17.70333 -16.26595 -15.99803 -15.57640 -15.48364 -14.56526 -14.30470 -13.97948 -13.29578 -13.19102 -12.52148 -12.37793 -12.24559 -11.80516 -11.67871 -11.43163 -11.03464 -10.81232 -10.59535 -10.50729 -10.14219 -9.83752 -9.72621 -9.34168 -8.85279 -8.49630 -7.95377 -6.14808 -4.19806 1.24692 1.30035 1.67402 3.23943 3.31077 3.34423 3.65341 3.66233 4.36793 4.74253 4.76212 5.11659 5.21913 5.30407 5.36767 5.50203 5.56945 5.82050 5.87824 5.93748 5.99195 6.14381 6.31505 6.39310 6.58658 6.68836 7.42228 7.57195 7.72260 7.93682 8.17844 8.85864 9.45019 10.96739 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.050751 B = 0.003181 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.578554 B = 8800.574075 C = 9326.399125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.020 4.020 3 C -0.160 4.160 4 C 0.167 3.833 5 O -0.310 6.310 6 C 0.062 3.938 7 C 0.025 3.975 8 C -0.528 4.528 9 H 0.059 0.941 10 C 0.061 3.939 11 N -0.889 5.889 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C -0.214 4.214 17 C -0.045 4.045 18 C -0.145 4.145 19 Br -0.064 7.064 20 H 0.077 0.923 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.137 0.863 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.028 0.972 27 H 0.028 0.972 28 H 0.263 0.737 29 H 0.139 0.861 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -16.725 0.028 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.180 4.180 4 C 0.119 3.881 5 O -0.223 6.223 6 C -0.011 4.011 7 C -0.012 4.012 8 C -0.566 4.566 9 H 0.077 0.923 10 C -0.142 4.142 11 N -0.527 5.527 12 Si 0.726 3.274 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.234 4.234 17 C -0.065 4.065 18 C -0.224 4.224 19 Br 0.021 6.979 20 H 0.096 0.904 21 H 0.091 0.909 22 H 0.095 0.905 23 H 0.155 0.845 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -15.317 -16.929 0.031 22.830 hybrid contribution 1.542 0.255 0.009 1.563 sum -13.774 -16.675 0.040 21.628 Atomic orbital electron populations 1.20983 0.90231 1.03636 1.03121 1.19488 0.96246 0.90761 0.95684 1.20285 0.91240 0.98084 1.08353 1.19295 0.91924 0.85903 0.91021 1.86210 1.23126 1.26736 1.86194 1.23425 0.74162 1.03642 0.99916 1.19140 0.94968 0.88144 0.98969 1.20998 0.90316 0.92924 1.52342 0.92266 1.24992 0.99095 0.95245 0.94828 1.69984 1.35655 0.97402 1.49641 0.86425 0.84907 0.78264 0.77761 1.19617 1.20803 1.20798 1.21375 1.01117 0.91594 1.09291 1.20829 0.91786 0.98318 0.95531 1.21402 0.94431 0.90590 1.15966 1.96577 1.75749 1.27537 1.98049 0.90397 0.90862 0.90521 0.84474 0.92840 0.92842 0.95315 0.95322 0.92706 0.84306 0.85123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.54 36.00 0.34 -0.86 16 2 C -0.02 -0.25 5.88 -104.62 -0.62 -0.87 16 3 C -0.16 -2.32 9.64 -39.44 -0.38 -2.70 16 4 C 0.17 2.78 6.69 -39.22 -0.26 2.52 16 5 O -0.31 -6.12 10.14 -19.49 -0.20 -6.32 16 6 C 0.06 1.29 4.68 37.15 0.17 1.46 16 7 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 8 C -0.53 -14.45 9.11 -34.44 -0.31 -14.76 16 9 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 12 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 16 C -0.21 -3.21 9.04 -39.43 -0.36 -3.57 16 17 C -0.04 -0.59 9.78 -39.58 -0.39 -0.98 16 18 C -0.14 -1.87 6.22 -39.50 -0.25 -2.12 16 19 Br -0.06 -0.70 31.78 -68.01 -2.16 -2.86 16 20 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 22 H 0.08 0.71 6.65 -51.93 -0.35 0.37 16 23 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 24 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 25 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.14 2.00 6.30 -52.49 -0.33 1.67 16 30 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 280.38 15.07 4.23 4.23 Total: -1.00 -28.92 280.38 -8.25 -37.17 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -3.55 Total: -3.02 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: -2.29 Total: -19.79 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 0.74 Total: -25.37 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.20 Total: -6.32 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 35 Polarization: -0.70 SS G_CDS: -2.16 Total: -2.86 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.92 -8.25 -37.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095734263.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.699 kcal (2) G-P(sol) polarization free energy of solvation -28.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds