Wall clock time and date at job start Wed Apr 15 2020 11:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38163 * 119.97989 * 2 1 4 4 C 1.38701 * 119.95399 * 180.02562 * 3 2 1 5 5 O 1.35920 * 120.04711 * 180.02562 * 4 3 2 6 6 C 1.42901 * 117.00110 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46990 * 179.97438 * 7 6 5 9 9 H 1.08003 * 120.00025 * 359.97438 * 8 7 6 10 10 C 1.37879 * 119.99843 * 179.97438 * 8 7 6 11 11 N 1.31516 * 120.00242 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99751 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47103 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46832 * 120.00248 * 12 10 8 15 15 H 1.48499 * 109.47151 * 240.00200 * 12 10 8 16 16 C 1.38748 * 119.91061 * 359.97438 * 4 3 2 17 17 C 1.38125 * 119.95415 * 359.97438 * 16 4 3 18 18 C 1.38325 * 119.97338 * 179.97438 * 2 1 3 19 19 Br 1.89095 * 119.95582 * 359.72474 * 18 2 1 20 20 H 1.08998 * 109.47137 * 270.02517 * 1 2 3 21 21 H 1.09007 * 109.47193 * 30.02586 * 1 2 3 22 22 H 1.08997 * 109.47388 * 150.02345 * 1 2 3 23 23 H 1.08001 * 120.02132 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.46918 * 299.99691 * 6 5 4 25 25 H 1.08993 * 109.47185 * 59.99478 * 6 5 4 26 26 H 1.09003 * 109.47183 * 299.99658 * 7 6 5 27 27 H 1.09001 * 109.47371 * 60.00090 * 7 6 5 28 28 H 0.97000 * 119.99723 * 179.97438 * 11 10 8 29 29 H 1.08000 * 120.02859 * 180.02562 * 16 4 3 30 30 H 1.07994 * 119.97792 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1968 0.0000 4 6 3.5844 1.1961 -0.0005 5 8 4.2655 2.3724 0.0000 6 6 5.6924 2.2958 -0.0012 7 6 6.2789 3.7089 -0.0010 8 6 7.7838 3.6281 -0.0016 9 1 8.2729 2.6652 -0.0017 10 6 8.5361 4.7836 -0.0021 11 7 7.9405 5.9561 -0.0016 12 14 10.4014 4.6835 -0.0021 13 1 10.8207 3.2589 -0.0022 14 1 10.9332 5.3556 -1.2150 15 1 10.9333 5.3564 1.2101 16 6 4.2757 -0.0068 -0.0005 17 6 3.5817 -1.2011 0.0005 18 6 2.1980 -1.1982 0.0005 19 35 1.2505 -2.8347 0.0091 20 1 -0.3633 0.0005 1.0276 21 1 -0.3634 0.8898 -0.5143 22 1 -0.3634 -0.8902 -0.5134 23 1 1.6574 2.1321 -0.0004 24 1 6.0284 1.7625 0.8881 25 1 6.0270 1.7640 -0.8918 26 1 5.9430 4.2418 -0.8905 27 1 5.9444 4.2411 0.8895 28 1 8.4699 6.7690 -0.0016 29 1 5.3557 -0.0096 -0.0005 30 1 4.1194 -2.1377 0.0010 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095734263.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:39 Heat of formation + Delta-G solvation = -46.756232 kcal Electronic energy + Delta-G solvation = -14061.178694 eV Core-core repulsion = 11480.661947 eV Total energy + Delta-G solvation = -2580.516746 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.21622 -38.86357 -35.50991 -33.69840 -33.07406 -32.06915 -29.79934 -27.86569 -26.88198 -23.79896 -23.27947 -21.69981 -19.16635 -18.14379 -17.24012 -17.01504 -16.76351 -16.46486 -15.39475 -15.00089 -14.63784 -14.37496 -14.22997 -14.00251 -13.28983 -13.03374 -12.98395 -12.75301 -12.70939 -12.48877 -12.06664 -11.96876 -11.59629 -11.39399 -11.21909 -11.05479 -10.62802 -9.90420 -9.13696 -8.27152 -6.40642 0.13568 0.20920 0.66700 1.41799 1.42245 1.55706 2.20658 2.46782 2.53838 3.07807 3.70481 3.76029 4.02930 4.21665 4.25453 4.31419 4.37049 4.62114 4.70839 4.77135 4.84950 4.97070 5.16312 5.27619 5.30930 5.34047 5.46255 5.58793 5.72502 6.05971 6.43261 6.74485 7.29783 8.86094 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.050751 B = 0.003181 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.578554 B = 8800.574075 C = 9326.399125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.018 4.018 3 C -0.167 4.167 4 C 0.134 3.866 5 O -0.334 6.334 6 C 0.081 3.919 7 C 0.027 3.973 8 C -0.546 4.546 9 H 0.072 0.928 10 C 0.002 3.998 11 N -0.931 5.931 12 Si 0.975 3.025 13 H -0.257 1.257 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.221 4.221 17 C -0.044 4.044 18 C -0.149 4.149 19 Br -0.039 7.039 20 H 0.091 0.909 21 H 0.085 0.915 22 H 0.084 0.916 23 H 0.143 0.857 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.000 1.000 27 H -0.001 1.001 28 H 0.267 0.733 29 H 0.141 0.859 30 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.052 -18.868 0.046 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.020 4.020 3 C -0.186 4.186 4 C 0.087 3.913 5 O -0.248 6.248 6 C 0.007 3.993 7 C -0.010 4.010 8 C -0.583 4.583 9 H 0.090 0.910 10 C -0.196 4.196 11 N -0.570 5.570 12 Si 0.799 3.201 13 H -0.181 1.181 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.240 4.240 17 C -0.064 4.064 18 C -0.228 4.228 19 Br 0.046 6.954 20 H 0.109 0.891 21 H 0.104 0.896 22 H 0.103 0.897 23 H 0.161 0.839 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.018 0.982 27 H 0.018 0.982 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.444 -19.103 0.049 24.565 hybrid contribution 1.401 0.818 0.004 1.622 sum -14.043 -18.285 0.053 23.056 Atomic orbital electron populations 1.21067 0.87914 1.04656 1.04235 1.19828 0.97869 0.90047 0.94294 1.20481 0.90555 0.99266 1.08286 1.19587 0.92700 0.85388 0.93599 1.86121 1.22264 1.28860 1.87520 1.22955 0.75225 1.00223 1.00898 1.18975 0.95096 0.90782 0.96140 1.21434 0.91252 0.93619 1.52033 0.91028 1.26023 1.04690 0.94752 0.94169 1.70122 1.37877 0.98320 1.50680 0.85250 0.78096 0.78956 0.77836 1.18098 1.20306 1.20299 1.21457 1.01363 0.91683 1.09526 1.21083 0.92161 0.98505 0.94611 1.21701 0.94744 0.91829 1.14531 1.96607 1.75127 1.25700 1.97927 0.89079 0.89650 0.89744 0.83876 0.91775 0.91784 0.98206 0.98212 0.92449 0.84124 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 9.54 71.23 0.68 -1.40 16 2 C -0.02 -0.44 5.88 -19.86 -0.12 -0.56 16 3 C -0.17 -4.74 9.64 22.36 0.22 -4.53 16 4 C 0.13 4.48 6.69 22.50 0.15 4.63 16 5 O -0.33 -13.58 10.14 -92.64 -0.94 -14.52 16 6 C 0.08 3.42 4.68 71.98 0.34 3.76 16 7 C 0.03 1.46 5.34 29.85 0.16 1.62 16 8 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 9 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 10 C 0.00 0.13 5.46 84.65 0.46 0.59 16 11 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 12 Si 0.98 42.94 29.54 68.60 2.03 44.97 16 13 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 16 C -0.22 -6.45 9.04 22.37 0.20 -6.25 16 17 C -0.04 -1.08 9.78 22.27 0.22 -0.86 16 18 C -0.15 -3.52 6.22 22.32 0.14 -3.38 16 19 Br -0.04 -0.74 31.78 -20.37 -0.65 -1.38 16 20 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 21 H 0.08 1.26 8.09 -2.38 -0.02 1.24 16 22 H 0.08 1.32 6.65 -2.39 -0.02 1.30 16 23 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 24 H 0.06 2.52 7.66 -2.39 -0.02 2.51 16 25 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 26 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 27 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.14 3.96 6.30 -2.91 -0.02 3.94 16 30 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -62.71 280.38 4.54 -58.18 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: 1.13 Total: 4.91 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 2.68 Total: -36.41 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.28 Total: -55.73 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.94 Total: -14.52 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.65 Total: -1.38 kcal Total: -62.71 4.54 -58.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095734263.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.421 kcal (2) G-P(sol) polarization free energy of solvation -62.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds