Wall clock time and date at job start Wed Apr 15 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99427 * 2 1 4 4 H 1.48504 * 109.46712 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47340 * 299.99709 * 3 2 1 6 6 H 1.48499 * 109.47305 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47389 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47593 * 180.02562 * 10 9 7 12 12 N 1.30101 * 124.95167 * 305.14469 * 11 10 9 13 13 C 1.35806 * 109.65023 * 180.27184 * 12 11 10 14 14 C 1.39765 * 133.53720 * 179.74618 * 13 12 11 15 15 C 1.37668 * 119.78112 * 180.02562 * 14 13 12 16 16 Cl 1.73600 * 119.76053 * 179.97438 * 15 14 13 17 17 C 1.39001 * 120.48455 * 359.95273 * 15 14 13 18 18 Cl 1.73593 * 119.79266 * 180.02562 * 17 15 14 19 19 C 1.37919 * 120.41836 * 0.02752 * 17 15 14 20 20 C 1.38816 * 119.83775 * 359.97438 * 19 17 15 21 21 N 1.36050 * 124.95399 * 124.99686 * 11 10 9 22 22 H 0.97001 * 126.35172 * 0.02562 * 21 11 10 23 23 H 0.96990 * 120.00241 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47104 * 60.00508 * 9 7 2 25 25 H 1.09001 * 109.47578 * 300.00619 * 9 7 2 26 26 H 1.09001 * 109.47056 * 59.99610 * 10 9 7 27 27 H 1.09001 * 109.47062 * 300.00686 * 10 9 7 28 28 H 1.08010 * 120.11063 * 0.02562 * 14 13 12 29 29 H 1.07998 * 120.08232 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4921 -4.9671 -0.0012 12 7 0.5875 -5.3060 0.8704 13 6 0.1157 -6.5460 0.5803 14 6 -0.8378 -7.3768 1.1752 15 6 -1.1020 -8.6135 0.6313 16 17 -2.2860 -9.6452 1.3711 17 6 -0.4278 -9.0421 -0.5063 18 17 -0.7755 -10.6048 -1.1775 19 6 0.5156 -8.2336 -1.1051 20 6 0.7940 -6.9836 -0.5695 21 7 1.6566 -5.9616 -0.9149 22 1 2.2689 -5.9558 -1.6671 23 1 -0.4850 0.8399 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 -1.3658 -7.0496 2.0589 29 1 1.0364 -8.5722 -1.9885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225296363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:50 Heat of formation + Delta-G solvation = 38.349749 kcal Electronic energy + Delta-G solvation = -16604.867424 eV Core-core repulsion = 13579.637657 eV Total energy + Delta-G solvation = -3025.229767 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.018 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.14724 -38.13847 -36.61670 -36.06267 -33.92155 -33.14043 -31.61138 -30.05913 -28.63792 -25.71215 -22.92848 -22.39080 -21.78579 -20.15640 -18.09048 -17.46908 -16.54580 -15.98104 -15.37832 -15.10926 -14.51756 -14.25386 -13.74494 -13.43197 -13.19695 -12.90272 -12.33101 -12.20397 -12.02932 -11.36494 -11.24706 -11.05644 -11.01038 -10.81683 -10.73816 -10.53412 -10.14370 -9.86064 -9.67258 -9.23844 -8.43434 -8.39408 -8.08243 -6.07314 -4.12050 0.67025 1.07167 1.72958 2.03794 2.76611 2.96958 3.26990 3.34958 3.37602 3.59902 4.23700 4.38410 4.52579 4.86453 5.01196 5.20884 5.28783 5.32794 5.50018 5.73178 5.84480 6.14906 6.17864 6.20881 6.55339 6.64594 7.34284 7.54849 7.69106 7.91015 8.02398 8.25866 8.94596 9.52569 11.03593 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.003199 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.973007 B = 8749.709563 C = 9206.072509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.032 3.968 10 C -0.045 4.045 11 C 0.331 3.669 12 N -0.486 5.486 13 C 0.072 3.928 14 C -0.044 4.044 15 C -0.041 4.041 16 Cl -0.053 7.053 17 C -0.027 4.027 18 Cl -0.053 7.053 19 C -0.084 4.084 20 C 0.048 3.952 21 N -0.599 5.599 22 H 0.425 0.575 23 H 0.262 0.738 24 H 0.017 0.983 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.149 0.851 29 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.785 -19.330 -2.222 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.006 4.006 10 C -0.084 4.084 11 C 0.065 3.935 12 N -0.205 5.205 13 C -0.048 4.048 14 C -0.065 4.065 15 C -0.071 4.071 16 Cl -0.024 7.024 17 C -0.056 4.056 18 Cl -0.024 7.024 19 C -0.106 4.106 20 C -0.064 4.064 21 N -0.210 5.210 22 H 0.264 0.736 23 H 0.071 0.929 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.167 0.833 29 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.179 -18.964 -1.489 19.023 hybrid contribution 0.798 0.223 -1.151 1.419 sum 0.977 -18.741 -2.640 18.951 Atomic orbital electron populations 1.69983 1.06080 1.26726 1.49958 1.25015 0.94849 0.99349 0.95086 0.86504 0.80004 0.83629 0.77650 1.19687 1.21031 1.20910 1.21169 0.93048 0.90631 1.51736 0.92326 1.19076 0.93384 0.89432 0.98702 1.20720 0.98363 0.86404 1.02890 1.24711 0.93352 0.91463 0.83958 1.70641 1.12432 1.10713 1.26748 1.19047 0.98349 0.93092 0.94330 1.19967 0.96284 0.90123 1.00078 1.20130 0.97263 0.93590 0.96128 1.98369 1.55765 1.66514 1.81762 1.20044 1.00226 0.89278 0.96085 1.98368 1.94280 1.25066 1.84660 1.19512 0.99039 0.90925 1.01089 1.18635 0.97014 0.91670 0.99081 1.43357 1.35457 1.14351 1.27790 0.73606 0.92867 0.96490 0.94583 0.89039 0.90784 0.83303 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.11 13.29 55.43 0.74 -25.37 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 15 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.79 15 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 15 7 C -0.53 -14.01 9.11 -34.44 -0.31 -14.33 15 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.78 4.91 -27.89 -0.14 0.65 15 10 C -0.04 -0.81 5.78 -27.89 -0.16 -0.97 15 11 C 0.33 5.71 7.37 -154.82 -1.14 4.56 15 12 N -0.49 -9.32 11.21 -8.23 -0.09 -9.41 15 13 C 0.07 1.20 7.23 -84.69 -0.61 0.58 15 14 C -0.04 -0.64 9.86 -39.22 -0.39 -1.02 15 15 C -0.04 -0.53 6.31 -39.51 -0.25 -0.78 15 16 Cl -0.05 -0.62 27.91 -51.86 -1.45 -2.06 15 17 C -0.03 -0.33 6.32 -39.42 -0.25 -0.58 15 18 Cl -0.05 -0.57 27.92 -51.86 -1.45 -2.01 15 19 C -0.08 -0.99 9.83 -39.48 -0.39 -1.38 15 20 C 0.05 0.68 7.30 -83.97 -0.61 0.06 15 21 N -0.60 -8.11 6.23 -8.00 -0.05 -8.16 15 22 H 0.42 4.13 8.96 -40.82 -0.37 3.76 15 23 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.09 1.61 8.14 -51.93 -0.42 1.18 15 27 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 28 H 0.15 1.96 8.06 -52.48 -0.42 1.54 15 29 H 0.14 1.27 8.06 -52.49 -0.42 0.84 15 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -30.26 290.61 -9.74 -40.00 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: -2.44 Total: -1.48 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -4.35 Total: -11.67 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.59 Total: -42.95 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -2.90 Total: -4.08 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.26 -9.74 -40.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225296363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.345 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds