Wall clock time and date at job start Wed Apr 15 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99427 * 2 1 4 4 H 1.48504 * 109.46712 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47340 * 299.99709 * 3 2 1 6 6 H 1.48499 * 109.47305 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00101 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47389 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47593 * 180.02562 * 10 9 7 12 12 N 1.30101 * 124.95167 * 305.14469 * 11 10 9 13 13 C 1.35806 * 109.65023 * 180.27184 * 12 11 10 14 14 C 1.39765 * 133.53720 * 179.74618 * 13 12 11 15 15 C 1.37668 * 119.78112 * 180.02562 * 14 13 12 16 16 Cl 1.73600 * 119.76053 * 179.97438 * 15 14 13 17 17 C 1.39001 * 120.48455 * 359.95273 * 15 14 13 18 18 Cl 1.73593 * 119.79266 * 180.02562 * 17 15 14 19 19 C 1.37919 * 120.41836 * 0.02752 * 17 15 14 20 20 C 1.38816 * 119.83775 * 359.97438 * 19 17 15 21 21 N 1.36050 * 124.95399 * 124.99686 * 11 10 9 22 22 H 0.97001 * 126.35172 * 0.02562 * 21 11 10 23 23 H 0.96990 * 120.00241 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47104 * 60.00508 * 9 7 2 25 25 H 1.09001 * 109.47578 * 300.00619 * 9 7 2 26 26 H 1.09001 * 109.47056 * 59.99610 * 10 9 7 27 27 H 1.09001 * 109.47062 * 300.00686 * 10 9 7 28 28 H 1.08010 * 120.11063 * 0.02562 * 14 13 12 29 29 H 1.07998 * 120.08232 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4921 -4.9671 -0.0012 12 7 0.5875 -5.3060 0.8704 13 6 0.1157 -6.5460 0.5803 14 6 -0.8378 -7.3768 1.1752 15 6 -1.1020 -8.6135 0.6313 16 17 -2.2860 -9.6452 1.3711 17 6 -0.4278 -9.0421 -0.5063 18 17 -0.7755 -10.6048 -1.1775 19 6 0.5156 -8.2336 -1.1051 20 6 0.7940 -6.9836 -0.5695 21 7 1.6566 -5.9616 -0.9149 22 1 2.2689 -5.9558 -1.6671 23 1 -0.4850 0.8399 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6248 -2.5571 0.8896 26 1 2.8721 -3.6042 0.8894 27 1 2.8722 -3.6042 -0.8905 28 1 -1.3658 -7.0496 2.0589 29 1 1.0364 -8.5722 -1.9885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225296363.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:50 Heat of formation + Delta-G solvation = 21.090008 kcal Electronic energy + Delta-G solvation = -16605.615863 eV Core-core repulsion = 13579.637657 eV Total energy + Delta-G solvation = -3025.978206 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.018 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.31791 -39.18510 -37.57113 -37.11283 -35.74438 -34.33870 -33.38955 -31.14137 -30.00111 -27.44657 -24.31048 -23.57638 -23.21916 -21.54681 -19.22007 -18.71928 -18.33602 -17.17597 -16.69591 -16.35761 -16.18127 -15.30729 -15.02875 -14.77368 -14.53431 -14.20925 -14.11586 -13.30681 -13.13805 -12.97215 -12.87482 -12.47722 -12.21458 -12.07552 -11.95191 -11.90281 -11.76113 -11.41689 -11.22682 -11.07364 -10.54323 -9.45228 -9.25242 -8.17130 -6.29230 -0.41589 0.00317 0.75003 1.02180 1.44518 1.45516 1.55905 1.58834 1.87395 2.43312 2.45854 3.10502 3.17487 3.42169 3.79023 3.98405 4.12247 4.19442 4.43153 4.49158 4.64252 4.74686 4.94951 4.99466 5.15481 5.36973 5.51184 5.67344 5.85583 6.18867 6.31984 6.80107 6.89197 7.40722 8.95063 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.038348 B = 0.003199 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.973007 B = 8749.709563 C = 9206.072509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.968 3.032 4 H -0.254 1.254 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.040 3.960 10 C -0.030 4.030 11 C 0.317 3.683 12 N -0.530 5.530 13 C 0.036 3.964 14 C -0.055 4.055 15 C -0.039 4.039 16 Cl -0.041 7.041 17 C -0.027 4.027 18 Cl -0.033 7.033 19 C -0.071 4.071 20 C 0.049 3.951 21 N -0.578 5.578 22 H 0.443 0.557 23 H 0.262 0.738 24 H -0.013 1.013 25 H -0.005 1.005 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.150 0.850 29 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -20.633 -3.418 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.178 1.178 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.576 4.576 8 H 0.093 0.907 9 C 0.001 3.999 10 C -0.069 4.069 11 C 0.050 3.950 12 N -0.251 5.251 13 C -0.083 4.083 14 C -0.075 4.075 15 C -0.070 4.070 16 Cl -0.012 7.012 17 C -0.056 4.056 18 Cl -0.004 7.004 19 C -0.092 4.092 20 C -0.062 4.062 21 N -0.190 5.190 22 H 0.287 0.713 23 H 0.071 0.929 24 H 0.006 0.994 25 H 0.014 0.986 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.167 0.833 29 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 1.775 -20.296 -2.709 20.553 hybrid contribution 0.211 0.455 -0.773 0.921 sum 1.986 -19.841 -3.482 20.242 Atomic orbital electron populations 1.70142 1.08072 1.27663 1.51650 1.26023 0.95665 1.03609 0.94822 0.85355 0.79396 0.78611 0.77390 1.17758 1.20741 1.21016 1.21688 0.94019 0.91481 1.50403 0.90675 1.18828 0.93855 0.91856 0.95319 1.20392 0.96987 0.84723 1.04751 1.24251 0.93732 0.91973 0.85073 1.70508 1.13586 1.12539 1.28440 1.19338 0.99970 0.92866 0.96144 1.20041 0.96363 0.90661 1.00467 1.20206 0.97279 0.93205 0.96261 1.98374 1.55261 1.65913 1.81653 1.20201 0.99736 0.90059 0.95623 1.98381 1.94139 1.23651 1.84262 1.19814 0.98379 0.89469 1.01534 1.18793 0.96609 0.92393 0.98454 1.43101 1.35288 1.13189 1.27459 0.71340 0.92936 0.99417 0.98622 0.88416 0.87680 0.83272 0.80789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.29 21.45 0.28 -56.35 15 2 C 0.00 -0.19 5.46 84.65 0.46 0.27 15 3 Si 0.97 42.74 29.54 68.60 2.03 44.77 15 4 H -0.25 -10.37 7.11 99.48 0.71 -9.67 15 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 15 7 C -0.54 -28.72 9.11 25.60 0.23 -28.49 15 8 H 0.08 3.68 7.74 -2.91 -0.02 3.65 15 9 C 0.04 2.00 4.91 29.85 0.15 2.14 15 10 C -0.03 -1.07 5.78 29.85 0.17 -0.90 15 11 C 0.32 10.93 7.37 137.92 1.02 11.95 15 12 N -0.53 -20.99 11.21 -179.95 -2.02 -23.01 15 13 C 0.04 1.22 7.23 39.44 0.29 1.50 15 14 C -0.05 -1.59 9.86 22.50 0.22 -1.37 15 15 C -0.04 -0.98 6.31 22.32 0.14 -0.84 15 16 Cl -0.04 -0.90 27.91 -2.72 -0.08 -0.98 15 17 C -0.03 -0.59 6.32 22.38 0.14 -0.45 15 18 Cl -0.03 -0.63 27.92 -2.72 -0.08 -0.70 15 19 C -0.07 -1.47 9.83 22.33 0.22 -1.25 15 20 C 0.05 1.34 7.30 38.84 0.28 1.62 15 21 N -0.58 -14.79 6.23 -179.21 -1.12 -15.91 15 22 H 0.44 7.47 8.96 -92.71 -0.83 6.64 15 23 H 0.26 14.94 8.31 -92.72 -0.77 14.17 15 24 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 15 25 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 15 26 H 0.10 3.38 8.14 -2.39 -0.02 3.36 15 27 H 0.10 3.09 8.14 -2.39 -0.02 3.08 15 28 H 0.15 4.11 8.06 -2.91 -0.02 4.08 15 29 H 0.17 2.40 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -67.32 290.61 2.72 -64.60 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.37 Total: 3.38 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.32 Total: -15.82 kcal Atomic # 7 Polarization: -92.41 SS G_CDS: -2.85 Total: -95.26 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.15 Total: -1.68 kcal Total: -67.32 2.72 -64.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225296363.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.691 kcal (2) G-P(sol) polarization free energy of solvation -67.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds