Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 120.00034 * 2 1 4 4 H 1.48490 * 109.47107 * 239.99804 * 3 2 1 5 5 H 1.48503 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99528 * 3 2 1 7 7 C 1.38949 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00053 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00239 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00064 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.47234 * 180.02562 * 12 10 9 14 14 C 1.34718 * 116.99985 * 179.97438 * 13 12 10 15 15 O 1.21477 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.47662 * 119.99772 * 179.97438 * 14 13 12 17 17 C 1.40142 * 120.54628 * 180.02562 * 16 14 13 18 18 C 1.38241 * 118.30012 * 179.97438 * 17 16 14 19 19 C 1.38572 * 119.29907 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.46911 * 179.97438 * 19 18 17 21 21 N 1.32049 * 121.05584 * 0.26179 * 19 18 17 22 22 C 1.31677 * 121.86561 * 359.46563 * 21 19 18 23 23 H 0.97006 * 120.00256 * 0.02562 * 1 2 3 24 24 H 0.97002 * 119.99996 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.47137 * 60.00211 * 12 10 9 26 26 H 1.09003 * 109.46996 * 299.99969 * 12 10 9 27 27 H 1.08002 * 120.85302 * 359.94961 * 17 16 14 28 28 H 1.07992 * 120.34988 * 180.02562 * 18 17 16 29 29 H 1.08008 * 119.71409 * 180.27519 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 8 2.1874 -5.9665 0.0007 14 6 1.6725 -7.2114 0.0008 15 8 0.4682 -7.3707 -0.0001 16 6 2.5720 -8.3824 0.0010 17 6 2.0488 -9.6825 0.0006 18 6 2.9333 -10.7449 0.0002 19 6 4.2959 -10.4929 -0.0003 20 17 5.4105 -11.8238 -0.0001 21 7 4.7600 -9.2567 0.0047 22 6 3.9574 -8.2128 0.0000 23 1 -0.4851 0.8401 -0.0004 24 1 0.3534 -2.3906 0.0005 25 1 0.6175 -4.9205 -0.8903 26 1 0.6168 -4.9208 0.8897 27 1 0.9819 -9.8502 0.0010 28 1 2.5662 -11.7606 -0.0005 29 1 4.3747 -7.2166 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731235941.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = -89.414555 kcal Electronic energy + Delta-G solvation = -18559.158083 eV Core-core repulsion = 15087.678875 eV Total energy + Delta-G solvation = -3471.479208 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.02918 -39.84996 -38.17099 -37.07746 -36.26904 -34.04703 -33.12292 -31.92548 -31.40583 -28.50308 -25.35975 -24.41801 -24.08208 -21.37199 -19.65645 -18.47130 -18.14428 -17.68884 -17.07306 -16.49343 -16.25373 -15.72168 -14.94070 -14.91337 -14.56037 -14.05089 -14.03904 -13.76445 -13.23994 -12.86992 -12.49527 -12.14863 -12.05481 -11.75846 -11.64667 -11.13903 -10.86191 -10.55208 -10.51046 -10.48849 -10.32369 -10.02493 -9.62995 -9.48809 -8.58139 -8.12101 -6.53137 -3.95441 -0.00760 0.68305 1.31783 2.26264 2.44265 3.13535 3.21536 3.25964 3.28681 3.69102 3.99226 4.07705 4.26540 4.37866 4.48726 4.51150 4.93515 5.11341 5.12830 5.29671 5.46266 5.59484 5.61627 5.93815 5.98543 6.39580 7.19313 7.44728 7.61613 7.90263 8.44068 9.03480 9.34997 9.84414 10.63812 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.041994 B = 0.002814 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.600227 B = 9947.114756 C =10598.570672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.026 3.974 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.550 5.550 10 C 0.437 3.563 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.319 6.319 14 C 0.511 3.489 15 O -0.504 6.504 16 C -0.170 4.170 17 C 0.001 3.999 18 C -0.168 4.168 19 C 0.201 3.799 20 Cl -0.023 7.023 21 N -0.484 5.484 22 C 0.185 3.815 23 H 0.275 0.725 24 H 0.395 0.605 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.161 0.839 28 H 0.156 0.844 29 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 -20.313 -0.009 20.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.176 4.176 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.187 5.187 10 C 0.221 3.779 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.233 6.233 14 C 0.355 3.645 15 O -0.394 6.394 16 C -0.174 4.174 17 C -0.025 4.025 18 C -0.189 4.189 19 C 0.037 3.963 20 Cl 0.006 6.994 21 N -0.194 5.194 22 C 0.028 3.972 23 H 0.085 0.915 24 H 0.229 0.771 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.179 0.821 28 H 0.174 0.826 29 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 3.487 -20.138 -0.003 20.438 hybrid contribution -1.202 0.606 -0.003 1.346 sum 2.285 -19.532 -0.005 19.666 Atomic orbital electron populations 1.69602 1.06016 1.28661 1.49398 1.25314 0.95682 0.99892 0.96753 0.85850 0.78759 0.80015 0.79230 1.19730 1.20855 1.19721 1.19686 0.93489 0.81718 1.48428 0.87596 1.41686 1.09383 1.04057 1.63619 1.19260 0.88340 0.83999 0.86266 1.90567 1.13336 1.86727 1.55365 1.22833 0.90705 0.84169 1.03796 1.86569 1.40195 1.13713 1.82810 1.20743 0.86810 0.83652 0.73326 1.90845 1.15712 1.86927 1.45885 1.20285 0.94866 0.92513 1.09725 1.21750 1.01709 0.89675 0.89322 1.21807 0.91175 1.01485 1.04426 1.22073 0.88820 0.89558 0.95832 1.98429 1.63433 1.41542 1.96012 1.67202 1.40305 0.97907 1.14011 1.23407 0.88252 0.98027 0.87542 0.91529 0.77132 0.89228 0.89239 0.82133 0.82643 0.79319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.60 13.05 55.50 0.72 -22.87 15 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 15 3 Si 0.94 20.38 29.55 -169.99 -5.02 15.35 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 7 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 15 8 H 0.11 2.98 7.16 -52.49 -0.38 2.61 15 9 N -0.55 -13.51 5.29 -10.97 -0.06 -13.56 15 10 C 0.44 10.12 7.86 -10.99 -0.09 10.03 15 11 O -0.58 -15.42 16.08 -14.11 -0.23 -15.64 15 12 C 0.06 1.12 5.95 36.01 0.21 1.33 15 13 O -0.32 -5.50 9.03 -47.22 -0.43 -5.92 15 14 C 0.51 7.56 7.90 34.58 0.27 7.83 15 15 O -0.50 -8.09 16.21 -19.25 -0.31 -8.40 15 16 C -0.17 -2.04 5.89 -104.84 -0.62 -2.66 15 17 C 0.00 0.01 9.71 -38.87 -0.38 -0.37 15 18 C -0.17 -1.36 9.86 -39.46 -0.39 -1.74 15 19 C 0.20 2.05 7.27 -17.34 -0.13 1.93 15 20 Cl -0.02 -0.20 29.10 -51.86 -1.51 -1.71 15 21 N -0.48 -5.92 10.32 -9.99 -0.10 -6.03 15 22 C 0.19 2.25 10.79 -17.12 -0.18 2.07 15 23 H 0.27 6.85 8.31 -40.82 -0.34 6.51 15 24 H 0.40 9.17 7.90 -40.82 -0.32 8.84 15 25 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 27 H 0.16 1.22 7.74 -52.49 -0.41 0.82 15 28 H 0.16 0.77 8.06 -52.49 -0.42 0.34 15 29 H 0.19 2.29 7.62 -52.48 -0.40 1.89 15 LS Contribution 293.42 15.07 4.42 4.42 Total: -1.00 -31.32 293.42 -5.95 -37.28 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -1.91 Total: 6.45 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -1.53 Total: 10.64 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.56 Total: -42.46 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.97 Total: -29.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.51 Total: -1.71 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.32 -5.95 -37.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235941.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.138 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds