Wall clock time and date at job start Wed Apr 15 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86807 * 120.00034 * 2 1 4 4 H 1.48490 * 109.47107 * 239.99804 * 3 2 1 5 5 H 1.48503 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99528 * 3 2 1 7 7 C 1.38949 * 120.00433 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00208 * 179.97438 * 7 2 1 9 9 N 1.37101 * 119.99712 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00053 * 179.97438 * 9 7 2 11 11 O 1.21288 * 120.00239 * 359.97438 * 10 9 7 12 12 C 1.50704 * 120.00064 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.47234 * 180.02562 * 12 10 9 14 14 C 1.34718 * 116.99985 * 179.97438 * 13 12 10 15 15 O 1.21477 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.47662 * 119.99772 * 179.97438 * 14 13 12 17 17 C 1.40142 * 120.54628 * 180.02562 * 16 14 13 18 18 C 1.38241 * 118.30012 * 179.97438 * 17 16 14 19 19 C 1.38572 * 119.29907 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.46911 * 179.97438 * 19 18 17 21 21 N 1.32049 * 121.05584 * 0.26179 * 19 18 17 22 22 C 1.31677 * 121.86561 * 359.46563 * 21 19 18 23 23 H 0.97006 * 120.00256 * 0.02562 * 1 2 3 24 24 H 0.97002 * 119.99996 * 359.97438 * 9 7 2 25 25 H 1.08999 * 109.47137 * 60.00211 * 12 10 9 26 26 H 1.09003 * 109.46996 * 299.99969 * 12 10 9 27 27 H 1.08002 * 120.85302 * 359.94961 * 17 16 14 28 28 H 1.07992 * 120.34988 * 180.02562 * 18 17 16 29 29 H 1.08008 * 119.71409 * 180.27519 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2124 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0888 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5577 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2438 -4.8629 0.0000 13 8 2.1874 -5.9665 0.0007 14 6 1.6725 -7.2114 0.0008 15 8 0.4682 -7.3707 -0.0001 16 6 2.5720 -8.3824 0.0010 17 6 2.0488 -9.6825 0.0006 18 6 2.9333 -10.7449 0.0002 19 6 4.2959 -10.4929 -0.0003 20 17 5.4105 -11.8238 -0.0001 21 7 4.7600 -9.2567 0.0047 22 6 3.9574 -8.2128 0.0000 23 1 -0.4851 0.8401 -0.0004 24 1 0.3534 -2.3906 0.0005 25 1 0.6175 -4.9205 -0.8903 26 1 0.6168 -4.9208 0.8897 27 1 0.9819 -9.8502 0.0010 28 1 2.5662 -11.7606 -0.0005 29 1 4.3747 -7.2166 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731235941.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:56 Heat of formation + Delta-G solvation = -109.767421 kcal Electronic energy + Delta-G solvation = -18560.040649 eV Core-core repulsion = 15087.678875 eV Total energy + Delta-G solvation = -3472.361774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.06078 -40.96098 -39.95807 -37.84403 -37.58499 -36.02809 -33.96085 -33.41976 -32.76726 -30.03961 -26.86022 -25.76376 -24.94437 -22.48386 -21.44466 -20.07645 -19.55175 -18.62621 -18.18626 -17.79735 -17.43696 -17.31386 -16.54662 -15.96415 -15.86076 -15.58086 -15.45833 -14.79627 -14.46840 -14.01470 -13.89403 -13.64091 -13.53550 -12.93804 -12.86092 -12.49821 -12.47646 -12.12688 -12.00986 -11.92157 -11.56345 -11.28480 -10.88389 -10.51301 -10.30279 -10.11008 -8.51595 -6.02099 -0.88740 -0.08123 0.55578 1.19451 1.20839 1.38549 1.44848 1.55756 1.88149 2.29719 2.41289 2.95746 3.14240 3.20296 3.43969 3.56848 3.69286 3.74054 4.02170 4.16250 4.22922 4.43478 4.59464 4.79660 5.13525 5.14578 5.37846 5.89371 6.32629 6.42558 6.52234 7.03727 7.40693 7.94165 8.64982 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.041994 B = 0.002814 C = 0.002641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.600227 B = 9947.114756 C =10598.570672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.007 4.007 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.617 6.617 12 C 0.073 3.927 13 O -0.336 6.336 14 C 0.517 3.483 15 O -0.517 6.517 16 C -0.183 4.183 17 C 0.012 3.988 18 C -0.148 4.148 19 C 0.192 3.808 20 Cl -0.012 7.012 21 N -0.508 5.508 22 C 0.178 3.822 23 H 0.281 0.719 24 H 0.400 0.600 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.183 0.817 28 H 0.195 0.805 29 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -21.707 -0.010 21.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.208 4.208 3 Si 0.820 3.180 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.504 6.504 12 C -0.004 4.004 13 O -0.251 6.251 14 C 0.361 3.639 15 O -0.407 6.407 16 C -0.186 4.186 17 C -0.013 4.013 18 C -0.169 4.169 19 C 0.028 3.972 20 Cl 0.017 6.983 21 N -0.219 5.219 22 C 0.021 3.979 23 H 0.090 0.910 24 H 0.235 0.765 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.200 0.800 28 H 0.212 0.788 29 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 2.680 -21.555 -0.004 21.721 hybrid contribution -0.928 0.891 -0.002 1.286 sum 1.752 -20.664 -0.006 20.739 Atomic orbital electron populations 1.69659 1.06903 1.29775 1.49075 1.26089 0.96554 1.02499 0.95634 0.84935 0.77756 0.76253 0.79092 1.19566 1.19422 1.19556 1.19686 0.92972 0.83409 1.50772 0.89746 1.41717 1.09579 1.04136 1.63985 1.20096 0.88100 0.85385 0.84190 1.90535 1.15433 1.87683 1.56744 1.22597 0.89947 0.81968 1.05863 1.86568 1.40561 1.14585 1.83414 1.21099 0.87083 0.83197 0.72471 1.90831 1.16226 1.86869 1.46760 1.20193 0.94214 0.92509 1.11703 1.22029 1.02943 0.88500 0.87866 1.22176 0.89812 1.02941 1.01931 1.22426 0.90089 0.89193 0.95475 1.98435 1.63355 1.40631 1.95890 1.67152 1.40929 0.98787 1.15052 1.23211 0.88535 0.97844 0.88345 0.90968 0.76499 0.87050 0.87062 0.80012 0.78768 0.80504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.76 13.05 21.66 0.28 -47.48 15 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 15 3 Si 1.00 41.52 29.55 68.60 2.03 43.55 15 4 H -0.27 -11.15 7.11 99.48 0.71 -10.45 15 5 H -0.27 -10.58 7.11 99.48 0.71 -9.87 15 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 15 7 C -0.34 -18.73 9.68 84.04 0.81 -17.92 15 8 H 0.08 4.94 7.16 -2.91 -0.02 4.92 15 9 N -0.56 -27.80 5.29 -307.00 -1.62 -29.42 15 10 C 0.44 20.54 7.86 87.66 0.69 21.23 15 11 O -0.62 -34.12 16.08 15.74 0.25 -33.86 15 12 C 0.07 2.58 5.95 71.24 0.42 3.01 15 13 O -0.34 -11.59 9.03 -49.90 -0.45 -12.04 15 14 C 0.52 14.82 7.90 70.31 0.56 15.38 15 15 O -0.52 -15.72 16.21 19.91 0.32 -15.40 15 16 C -0.18 -4.18 5.89 -20.00 -0.12 -4.30 15 17 C 0.01 0.19 9.71 22.73 0.22 0.41 15 18 C -0.15 -1.91 9.86 22.35 0.22 -1.69 15 19 C 0.19 3.55 7.27 84.74 0.62 4.16 15 20 Cl -0.01 -0.19 29.10 -2.72 -0.08 -0.27 15 21 N -0.51 -12.17 10.32 -185.52 -1.91 -14.08 15 22 C 0.18 4.35 10.79 85.04 0.92 5.26 15 23 H 0.28 13.73 8.31 -92.70 -0.77 12.96 15 24 H 0.40 18.75 7.90 -92.71 -0.73 18.02 15 25 H 0.11 3.46 8.14 -2.39 -0.02 3.44 15 26 H 0.11 3.45 8.14 -2.39 -0.02 3.43 15 27 H 0.18 2.12 7.74 -2.91 -0.02 2.10 15 28 H 0.20 0.98 8.06 -2.91 -0.02 0.96 15 29 H 0.18 4.58 7.62 -2.91 -0.02 4.56 15 Total: -1.00 -67.84 293.42 4.12 -63.72 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.49 Total: 19.62 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 4.81 Total: 25.66 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -3.25 Total: -90.98 kcal Atomic # 8 Polarization: -61.43 SS G_CDS: 0.13 Total: -61.30 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -67.84 4.12 -63.72 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731235941.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.048 kcal (2) G-P(sol) polarization free energy of solvation -67.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds