Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99536 * 2 1 4 4 H 1.48497 * 109.47439 * 269.99466 * 3 2 1 5 5 H 1.48496 * 109.47407 * 30.00407 * 3 2 1 6 6 H 1.48507 * 109.46676 * 149.99745 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34675 * 117.00050 * 179.97438 * 13 12 10 15 15 O 1.21435 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.48063 * 120.00362 * 179.97438 * 14 13 12 17 17 C 1.39308 * 119.72221 * 179.72824 * 16 14 13 18 18 C 1.38633 * 119.08469 * 179.73017 * 17 16 14 19 19 C 1.38545 * 118.50782 * 0.53392 * 18 17 16 20 20 C 1.38760 * 119.35010 * 359.72626 * 19 18 17 21 21 Cl 1.73602 * 119.56270 * 179.97438 * 20 19 18 22 22 N 1.31594 * 120.87005 * 0.02562 * 20 19 18 23 23 H 0.97002 * 120.00138 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 26 26 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 27 27 H 1.08002 * 120.45314 * 359.97438 * 17 16 14 28 28 H 1.08002 * 120.73830 * 180.26238 * 18 17 16 29 29 H 1.08002 * 120.32565 * 179.74938 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7394 0.0017 14 6 7.3800 -3.9159 0.0012 15 8 8.1197 -2.9529 0.0008 16 6 7.9460 -5.2841 0.0024 17 6 9.3279 -5.4598 -0.0039 18 6 9.8436 -6.7466 0.0030 19 6 8.9595 -7.8133 0.0045 20 6 7.5943 -7.5651 0.0049 21 17 6.4815 -8.8976 0.0061 22 7 7.1320 -6.3331 0.0034 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3633 -0.0004 25 1 5.9241 -1.8558 0.8906 26 1 5.9242 -1.8574 -0.8894 27 1 9.9884 -4.6053 -0.0099 28 1 10.9107 -6.9137 0.0027 29 1 9.3293 -8.8281 0.0057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731246053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -75.887451 kcal Electronic energy + Delta-G solvation = -18725.172525 eV Core-core repulsion = 15254.279897 eV Total energy + Delta-G solvation = -3470.892628 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.09187 -39.86357 -38.27894 -36.93485 -36.29479 -34.02747 -33.25584 -31.81059 -31.71835 -28.73429 -25.63806 -24.29678 -23.89744 -21.54061 -19.62550 -18.67433 -18.48160 -17.63587 -16.57083 -16.50755 -16.41947 -15.81405 -15.31310 -14.96325 -14.87328 -14.03628 -13.94033 -13.69149 -12.98923 -12.66041 -12.53173 -12.23343 -12.16553 -11.99971 -11.57829 -11.24544 -11.02064 -10.62944 -10.56527 -10.51987 -10.06069 -10.00944 -9.64144 -9.49688 -8.62374 -8.25660 -6.35685 -3.88440 0.01386 0.59842 1.43750 2.13178 2.35993 3.00798 3.05321 3.13834 3.28157 3.59335 3.78525 4.06529 4.22178 4.30536 4.41140 4.61931 4.76724 4.89600 5.13566 5.25459 5.36756 5.48246 5.54254 5.69642 5.82300 6.30589 7.06155 7.47442 7.66189 8.04497 8.51619 8.87607 9.33386 9.69700 10.76671 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.003494 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.906513 B = 8012.289618 C = 9003.050166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.122 0.878 9 N -0.581 5.581 10 C 0.448 3.552 11 O -0.550 6.550 12 C 0.054 3.946 13 O -0.296 6.296 14 C 0.520 3.480 15 O -0.500 6.500 16 C 0.119 3.881 17 C -0.105 4.105 18 C -0.070 4.070 19 C -0.127 4.127 20 C 0.172 3.828 21 Cl -0.017 7.017 22 N -0.421 5.421 23 H 0.275 0.725 24 H 0.373 0.627 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.734 -11.826 -0.017 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.160 4.160 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.435 4.435 8 H 0.140 0.860 9 N -0.221 5.221 10 C 0.233 3.767 11 O -0.431 6.431 12 C -0.023 4.023 13 O -0.209 6.209 14 C 0.362 3.638 15 O -0.388 6.388 16 C -0.018 4.018 17 C -0.126 4.126 18 C -0.096 4.096 19 C -0.148 4.148 20 C 0.005 3.995 21 Cl 0.012 6.988 22 N -0.134 5.134 23 H 0.086 0.914 24 H 0.206 0.794 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.178 0.822 28 H 0.175 0.825 29 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 21.261 -12.048 -0.017 24.438 hybrid contribution 1.281 1.295 0.015 1.822 sum 22.543 -10.753 -0.002 24.976 Atomic orbital electron populations 1.69619 1.05631 1.27686 1.48576 1.25036 0.95524 0.98032 0.97377 0.86674 0.79846 0.83899 0.79045 1.19443 1.19985 1.19370 1.19429 0.78654 0.96889 1.48508 0.85991 1.42020 1.07615 1.05619 1.66875 1.19145 0.86814 0.85210 0.85562 1.90640 1.68876 1.30613 1.52961 1.22884 0.95557 0.80110 1.03788 1.86751 1.21311 1.31041 1.81749 1.20696 0.81823 0.88008 0.73251 1.90850 1.60968 1.40870 1.46121 1.19968 0.89925 0.89993 1.01916 1.22229 0.94482 0.99492 0.96350 1.21627 1.01143 0.90963 0.95819 1.22194 0.91522 1.01949 0.99111 1.21735 0.88953 0.89046 0.99813 1.98442 1.63452 1.40637 1.96318 1.67036 1.40009 0.97906 1.08448 0.91437 0.79430 0.89113 0.89112 0.82232 0.82469 0.82784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.44 13.96 55.50 0.77 -24.66 15 2 C 0.04 1.20 5.50 -17.47 -0.10 1.11 15 3 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 15 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 5 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.27 -5.33 6.52 56.52 0.37 -4.96 15 7 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 15 8 H 0.12 3.95 7.39 -52.48 -0.39 3.56 15 9 N -0.58 -14.00 5.09 -10.96 -0.06 -14.05 15 10 C 0.45 10.65 7.86 -10.99 -0.09 10.56 15 11 O -0.55 -15.65 16.08 -14.12 -0.23 -15.88 15 12 C 0.05 0.99 5.95 36.01 0.21 1.21 15 13 O -0.30 -5.70 9.57 -47.10 -0.45 -6.15 15 14 C 0.52 8.33 7.95 34.76 0.28 8.60 15 15 O -0.50 -7.98 16.11 -19.22 -0.31 -8.29 15 16 C 0.12 1.60 6.75 -83.03 -0.56 1.04 15 17 C -0.11 -0.95 9.63 -39.04 -0.38 -1.32 15 18 C -0.07 -0.43 10.17 -39.32 -0.40 -0.83 15 19 C -0.13 -0.92 9.88 -39.28 -0.39 -1.31 15 20 C 0.17 1.96 7.27 -17.46 -0.13 1.84 15 21 Cl -0.02 -0.19 29.11 -51.86 -1.51 -1.70 15 22 N -0.42 -6.23 10.10 -6.95 -0.07 -6.30 15 23 H 0.27 7.35 8.31 -40.82 -0.34 7.01 15 24 H 0.37 7.76 5.76 -40.82 -0.24 7.53 15 25 H 0.09 1.44 8.14 -51.93 -0.42 1.02 15 26 H 0.09 1.43 8.14 -51.93 -0.42 1.01 15 27 H 0.16 1.17 7.64 -52.49 -0.40 0.77 15 28 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 15 29 H 0.15 0.61 8.06 -52.49 -0.42 0.19 15 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -35.27 291.09 -5.75 -41.03 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -1.88 Total: 5.08 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: -1.69 Total: 12.05 kcal Atomic # 7 Polarization: -45.67 SS G_CDS: 0.65 Total: -45.02 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.99 Total: -30.32 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.51 Total: -1.70 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -35.27 -5.75 -41.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.861 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds