Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86797 * 119.99536 * 2 1 4 4 H 1.48497 * 109.47439 * 269.99466 * 3 2 1 5 5 H 1.48496 * 109.47407 * 30.00407 * 3 2 1 6 6 H 1.48507 * 109.46676 * 149.99745 * 3 2 1 7 7 C 1.38948 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00263 * 359.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34675 * 117.00050 * 179.97438 * 13 12 10 15 15 O 1.21435 * 120.00185 * 0.02562 * 14 13 12 16 16 C 1.48063 * 120.00362 * 179.97438 * 14 13 12 17 17 C 1.39308 * 119.72221 * 179.72824 * 16 14 13 18 18 C 1.38633 * 119.08469 * 179.73017 * 17 16 14 19 19 C 1.38545 * 118.50782 * 0.53392 * 18 17 16 20 20 C 1.38760 * 119.35010 * 359.72626 * 19 18 17 21 21 Cl 1.73602 * 119.56270 * 179.97438 * 20 19 18 22 22 N 1.31594 * 120.87005 * 0.02562 * 20 19 18 23 23 H 0.97002 * 120.00138 * 0.02562 * 1 2 3 24 24 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 25 25 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 26 26 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 27 27 H 1.08002 * 120.45314 * 359.97438 * 17 16 14 28 28 H 1.08002 * 120.73830 * 180.26238 * 18 17 16 29 29 H 1.08002 * 120.32565 * 179.74938 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1387 0.0014 9 7 3.3799 -1.2033 0.0000 10 6 4.0538 -2.3705 0.0011 11 8 3.4474 -3.4209 0.0020 12 6 5.5608 -2.3704 0.0011 13 8 6.0448 -3.7394 0.0017 14 6 7.3800 -3.9159 0.0012 15 8 8.1197 -2.9529 0.0008 16 6 7.9460 -5.2841 0.0024 17 6 9.3279 -5.4598 -0.0039 18 6 9.8436 -6.7466 0.0030 19 6 8.9595 -7.8133 0.0045 20 6 7.5943 -7.5651 0.0049 21 17 6.4815 -8.8976 0.0061 22 7 7.1320 -6.3331 0.0034 23 1 -0.4850 0.8401 -0.0004 24 1 3.8648 -0.3633 -0.0004 25 1 5.9241 -1.8558 0.8906 26 1 5.9242 -1.8574 -0.8894 27 1 9.9884 -4.6053 -0.0099 28 1 10.9107 -6.9137 0.0027 29 1 9.3293 -8.8281 0.0057 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731246053.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -102.244394 kcal Electronic energy + Delta-G solvation = -18726.315448 eV Core-core repulsion = 15254.279897 eV Total energy + Delta-G solvation = -3472.035551 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.09470 -40.98174 -40.10389 -37.79853 -37.57964 -36.11027 -33.98201 -33.87374 -32.56536 -30.30769 -26.96322 -25.84357 -24.66551 -22.61606 -21.57738 -20.55672 -19.65198 -18.62024 -17.87750 -17.69257 -17.56560 -17.03119 -16.79919 -16.24074 -16.12395 -15.45217 -15.41505 -14.77882 -14.44398 -14.23674 -14.05776 -13.83003 -13.21115 -13.01718 -12.83060 -12.47282 -12.41273 -12.20237 -12.00187 -11.93831 -11.60398 -11.19758 -10.87893 -10.62606 -10.35708 -10.26300 -8.47018 -6.10723 -0.77146 -0.07771 0.66777 1.12227 1.16694 1.29835 1.33094 1.44414 1.73973 2.19755 2.47064 2.61445 3.06550 3.08585 3.59239 3.64946 3.82336 3.86459 4.02486 4.07194 4.10054 4.26584 4.80443 4.84203 5.06241 5.26952 5.45759 5.83306 6.15143 6.46268 6.57558 6.75735 7.23578 7.76659 8.69749 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.003494 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.906513 B = 8012.289618 C = 9003.050166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.271 1.271 6 H -0.230 1.230 7 C -0.335 4.335 8 H 0.058 0.942 9 N -0.574 5.574 10 C 0.446 3.554 11 O -0.609 6.609 12 C 0.064 3.936 13 O -0.331 6.331 14 C 0.520 3.480 15 O -0.504 6.504 16 C 0.082 3.918 17 C -0.090 4.090 18 C -0.048 4.048 19 C -0.105 4.105 20 C 0.149 3.851 21 Cl -0.031 7.031 22 N -0.476 5.476 23 H 0.283 0.717 24 H 0.394 0.606 25 H 0.123 0.877 26 H 0.123 0.877 27 H 0.180 0.820 28 H 0.213 0.787 29 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.506 -10.733 0.016 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.783 3.217 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.153 1.153 7 C -0.464 4.464 8 H 0.076 0.924 9 N -0.216 5.216 10 C 0.233 3.767 11 O -0.493 6.493 12 C -0.013 4.013 13 O -0.245 6.245 14 C 0.363 3.637 15 O -0.392 6.392 16 C -0.054 4.054 17 C -0.110 4.110 18 C -0.073 4.073 19 C -0.125 4.125 20 C -0.018 4.018 21 Cl -0.003 7.003 22 N -0.190 5.190 23 H 0.092 0.908 24 H 0.230 0.770 25 H 0.140 0.860 26 H 0.141 0.859 27 H 0.197 0.803 28 H 0.229 0.771 29 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 26.067 -10.946 0.017 28.273 hybrid contribution -0.190 0.781 0.001 0.804 sum 25.877 -10.165 0.018 27.802 Atomic orbital electron populations 1.69792 1.08129 1.29612 1.48982 1.26142 0.96522 1.02770 0.95486 0.85379 0.79576 0.76467 0.80243 1.17805 1.19551 1.15338 1.18995 0.80756 0.95321 1.51280 0.92426 1.41776 1.06080 1.06897 1.66884 1.20197 0.89386 0.84063 0.83046 1.90611 1.70951 1.32765 1.54973 1.22743 0.90798 0.80931 1.06784 1.86744 1.23765 1.31265 1.82683 1.21211 0.80440 0.89480 0.72559 1.90818 1.60467 1.41299 1.46632 1.19918 0.91488 0.88331 1.05652 1.22553 0.92415 1.01712 0.94325 1.22264 1.03367 0.88901 0.92749 1.22681 0.89458 1.04401 0.95968 1.22086 0.90496 0.87905 1.01360 1.98430 1.64461 1.40896 1.96503 1.66756 1.42169 0.99515 1.10523 0.90780 0.76964 0.85970 0.85884 0.80313 0.77061 0.78929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.68 13.96 21.66 0.30 -55.37 15 2 C -0.01 -0.52 5.50 84.92 0.47 -0.05 15 3 Si 0.96 38.44 27.74 68.60 1.90 40.34 15 4 H -0.25 -9.55 7.11 99.48 0.71 -8.84 15 5 H -0.27 -10.63 7.11 99.48 0.71 -9.93 15 6 H -0.23 -7.72 6.52 99.48 0.65 -7.07 15 7 C -0.33 -19.93 10.16 84.04 0.85 -19.07 15 8 H 0.06 4.09 7.39 -2.91 -0.02 4.07 15 9 N -0.57 -27.90 5.09 -306.98 -1.56 -29.46 15 10 C 0.45 21.75 7.86 87.66 0.69 22.44 15 11 O -0.61 -36.87 16.08 15.72 0.25 -36.62 15 12 C 0.06 2.30 5.95 71.24 0.42 2.72 15 13 O -0.33 -12.92 9.57 -49.46 -0.47 -13.40 15 14 C 0.52 16.39 7.95 70.43 0.56 16.95 15 15 O -0.50 -15.16 16.11 20.05 0.32 -14.83 15 16 C 0.08 2.13 6.75 41.87 0.28 2.42 15 17 C -0.09 -1.32 9.63 22.62 0.22 -1.11 15 18 C -0.05 -0.34 10.17 22.44 0.23 -0.11 15 19 C -0.10 -1.13 9.88 22.47 0.22 -0.91 15 20 C 0.15 3.28 7.27 84.85 0.62 3.89 15 21 Cl -0.03 -0.70 29.11 -2.72 -0.08 -0.78 15 22 N -0.48 -14.27 10.10 -175.89 -1.78 -16.04 15 23 H 0.28 15.42 8.31 -92.71 -0.77 14.65 15 24 H 0.39 15.54 5.76 -92.71 -0.53 15.00 15 25 H 0.12 3.58 8.14 -2.39 -0.02 3.56 15 26 H 0.12 3.58 8.14 -2.39 -0.02 3.56 15 27 H 0.18 1.89 7.64 -2.91 -0.02 1.87 15 28 H 0.21 -0.69 8.06 -2.91 -0.02 -0.72 15 29 H 0.19 0.54 8.06 -2.91 -0.02 0.52 15 Total: -1.00 -86.40 291.09 4.08 -82.32 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: 0.63 Total: 16.69 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 4.56 Total: 27.16 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -3.04 Total: -100.88 kcal Atomic # 8 Polarization: -64.95 SS G_CDS: 0.10 Total: -64.85 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 1.90 Total: 40.34 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -86.40 4.08 -82.32 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731246053.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.921 kcal (2) G-P(sol) polarization free energy of solvation -86.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds