Wall clock time and date at job start Wed Apr 15 2020 11:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86798 * 119.99982 * 2 1 4 4 H 1.48495 * 109.47014 * 274.64993 * 3 2 1 5 5 H 1.48497 * 109.47355 * 34.65517 * 3 2 1 6 6 H 1.48505 * 109.46923 * 154.65526 * 3 2 1 7 7 C 1.39891 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00043 * 162.16462 * 7 2 1 9 9 C 1.41211 * 120.00228 * 342.15691 * 7 2 1 10 10 C 1.40834 * 120.18017 * 155.14532 * 9 7 2 11 11 C 1.36435 * 119.81515 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18246 * 0.02562 * 11 10 9 13 13 O 1.35678 * 119.82121 * 179.97438 * 12 11 10 14 14 S 1.52198 * 114.00138 * 89.99474 * 13 12 11 15 15 O 1.42101 * 104.27852 * 191.07439 * 14 13 12 16 16 O 1.42099 * 104.27852 * 318.93412 * 14 13 12 17 17 C 1.81399 * 104.44998 * 75.00467 * 14 13 12 18 18 C 1.54029 * 113.81540 * 283.51058 * 17 14 13 19 19 O 1.44445 * 85.42706 * 223.23198 * 18 17 14 20 20 C 1.44182 * 93.37566 * 24.08812 * 19 18 17 21 21 C 1.39311 * 120.36926 * 0.27170 * 12 11 10 22 22 C 1.36447 * 120.17846 * 359.44019 * 21 12 11 23 23 H 0.97003 * 119.99725 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.09458 * 0.02562 * 10 9 7 25 25 H 1.08000 * 119.91299 * 179.97438 * 11 10 9 26 26 H 1.09000 * 112.99822 * 55.33168 * 17 14 13 27 27 H 1.09000 * 113.87210 * 337.33674 * 18 17 14 28 28 H 1.09002 * 113.86884 * 109.04685 * 18 17 14 29 29 H 1.09008 * 113.86397 * 221.76973 * 20 19 18 30 30 H 1.08995 * 113.98708 * 90.07633 * 20 19 18 31 31 H 1.07998 * 119.91152 * 179.70513 * 21 12 11 32 32 H 1.08001 * 120.09266 * 180.26858 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.3920 2.1031 -1.3954 5 1 1.4930 2.6223 0.7961 6 1 3.5862 1.4137 0.5993 7 6 2.0083 -1.2115 0.0005 8 1 3.0494 -1.2342 -0.2859 9 6 1.3531 -2.4049 0.3758 10 6 1.8225 -3.6475 -0.0921 11 6 1.1835 -4.7958 0.2747 12 6 0.0694 -4.7414 1.1092 13 8 -0.5608 -5.8879 1.4690 14 16 -0.0204 -6.5171 2.7451 15 8 -0.6233 -7.8033 2.7842 16 8 1.3890 -6.3716 2.6380 17 6 -0.6691 -5.4693 4.0763 18 6 0.0719 -4.1277 4.2289 19 8 0.0111 -4.3878 5.6484 20 6 -0.1073 -5.8134 5.4685 21 6 -0.4052 -3.5159 1.5715 22 6 0.2259 -2.3587 1.2188 23 1 -0.4850 0.8401 -0.0004 24 1 2.6858 -3.6914 -0.7395 25 1 1.5419 -5.7496 -0.0836 26 1 -1.7545 -5.3723 4.0513 27 1 1.0833 -4.1336 3.8225 28 1 -0.5115 -3.2631 3.9123 29 1 -0.8326 -6.2831 6.1330 30 1 0.8481 -6.3374 5.4414 31 1 -1.2723 -3.4820 2.2143 32 1 -0.1405 -1.4098 1.5815 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276874608.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:47:03 Heat of formation + Delta-G solvation = -91.899586 kcal Electronic energy + Delta-G solvation = -20787.707842 eV Core-core repulsion = 17421.704925 eV Total energy + Delta-G solvation = -3366.002917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.20704 -39.80927 -37.08780 -36.67363 -35.61041 -33.86654 -30.55171 -29.70665 -29.57756 -26.63443 -25.57867 -22.08680 -21.74211 -21.29686 -19.53278 -18.22568 -17.74614 -17.20070 -16.91232 -16.52608 -15.70901 -15.51302 -14.82246 -14.57297 -14.21048 -13.79594 -13.14742 -12.91264 -12.51962 -12.43167 -12.35780 -12.18531 -12.13677 -11.73400 -11.61488 -11.54247 -11.49307 -11.32133 -11.07566 -10.70230 -10.23796 -10.08529 -9.73463 -9.68084 -9.45960 -8.00121 -7.72454 -7.22488 -4.77528 0.58876 2.21136 2.71359 2.78460 2.86992 2.91194 2.99176 3.50397 3.62330 3.63287 4.13021 4.16650 4.67056 4.86368 5.00371 5.24036 5.27016 5.43057 5.66679 5.81366 5.96088 5.96781 6.03062 6.07484 6.58046 6.62400 6.76411 6.84315 7.15345 7.48121 7.51011 7.61984 7.80502 8.15506 8.40849 8.48640 9.69648 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.026329 B = 0.005535 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.220018 B = 5057.083998 C = 5634.117336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.071 3.929 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.426 4.426 8 H 0.090 0.910 9 C 0.120 3.880 10 C -0.216 4.216 11 C -0.040 4.040 12 C -0.108 4.108 13 O -0.635 6.635 14 S 2.570 3.430 15 O -0.959 6.959 16 O -0.952 6.952 17 C -0.707 4.707 18 C 0.077 3.923 19 O -0.372 6.372 20 C 0.073 3.927 21 C -0.098 4.098 22 C -0.156 4.156 23 H 0.290 0.710 24 H 0.108 0.892 25 H 0.104 0.896 26 H 0.159 0.841 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.661 -1.975 5.289 5.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.151 4.151 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.454 4.454 8 H 0.108 0.892 9 C 0.116 3.884 10 C -0.237 4.237 11 C -0.061 4.061 12 C -0.153 4.153 13 O -0.594 6.594 14 S 2.667 3.333 15 O -0.957 6.957 16 O -0.950 6.950 17 C -0.810 4.810 18 C 0.001 3.999 19 O -0.290 6.290 20 C -0.005 4.005 21 C -0.118 4.118 22 C -0.176 4.176 23 H 0.101 0.899 24 H 0.126 0.874 25 H 0.122 0.878 26 H 0.177 0.823 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.122 0.878 30 H 0.106 0.894 31 H 0.122 0.878 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.749 -2.353 5.176 5.735 hybrid contribution -0.332 0.819 0.224 0.911 sum -1.081 -1.534 5.400 5.717 Atomic orbital electron populations 1.69821 1.07888 1.30494 1.30798 1.26133 0.94909 1.02193 0.91831 0.86137 0.80852 0.79533 0.79542 1.19105 1.19598 1.17894 1.19873 0.98585 0.91023 1.35944 0.89201 1.17817 0.90616 0.92357 0.87590 1.20638 1.04032 0.91936 1.07062 1.20365 0.92739 0.98269 0.94693 1.17565 1.01887 0.79722 1.16138 1.85629 1.70713 1.46261 1.56830 1.07107 0.74944 0.75476 0.75771 1.93528 1.78568 1.38095 1.85526 1.93587 1.31863 1.86317 1.83231 1.33843 1.13807 1.14969 1.18409 1.24007 1.00572 0.94377 0.80984 1.89723 1.95483 1.19212 1.24630 1.23425 1.00046 0.85707 0.91320 1.20556 0.98921 0.91663 1.00671 1.20951 0.99107 0.96400 1.01189 0.89896 0.87385 0.87766 0.82316 0.87480 0.86827 0.87755 0.89368 0.87774 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -16.96 10.97 55.55 0.61 -16.35 16 2 C 0.07 1.53 5.13 -17.34 -0.09 1.44 16 3 Si 0.92 16.00 29.60 -169.99 -5.03 10.97 16 4 H -0.27 -4.63 7.11 56.52 0.40 -4.23 16 5 H -0.27 -4.66 7.11 56.52 0.40 -4.26 16 6 H -0.26 -4.46 7.11 56.52 0.40 -4.06 16 7 C -0.43 -9.67 9.04 -37.83 -0.34 -10.01 16 8 H 0.09 1.93 7.91 -52.48 -0.41 1.52 16 9 C 0.12 2.79 5.57 -106.81 -0.60 2.20 16 10 C -0.22 -4.79 9.74 -39.25 -0.38 -5.17 16 11 C -0.04 -0.87 8.97 -39.83 -0.36 -1.23 16 12 C -0.11 -2.29 4.64 -38.78 -0.18 -2.47 16 13 O -0.63 -12.69 10.03 -51.06 -0.51 -13.20 16 14 S 2.57 46.41 5.16 -107.50 -0.56 45.86 16 15 O -0.96 -19.20 18.09 -67.04 -1.21 -20.41 16 16 O -0.95 -19.18 15.62 -67.04 -1.05 -20.23 16 17 C -0.71 -10.37 4.23 -25.66 -0.11 -10.48 16 18 C 0.08 1.22 6.24 37.64 0.23 1.46 16 19 O -0.37 -5.88 12.46 -35.23 -0.44 -6.32 16 20 C 0.07 0.97 8.82 37.64 0.33 1.30 16 21 C -0.10 -1.98 6.64 -39.83 -0.26 -2.25 16 22 C -0.16 -3.46 8.64 -39.25 -0.34 -3.80 16 23 H 0.29 5.75 8.30 -40.82 -0.34 5.42 16 24 H 0.11 2.19 8.06 -52.49 -0.42 1.77 16 25 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 26 H 0.16 1.99 8.14 -51.93 -0.42 1.56 16 27 H 0.11 1.79 7.55 -51.93 -0.39 1.39 16 28 H 0.11 1.69 6.22 -51.93 -0.32 1.37 16 29 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 31 H 0.10 1.81 6.56 -52.49 -0.34 1.46 16 32 H 0.13 2.88 6.18 -52.49 -0.32 2.55 16 LS Contribution 284.13 15.07 4.28 4.28 Total: -1.00 -27.91 284.13 -9.04 -36.95 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -3.04 Total: 7.46 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: -2.09 Total: -29.01 kcal Atomic # 7 Polarization: -16.96 SS G_CDS: 0.61 Total: -16.35 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -3.21 Total: -60.16 kcal Atomic # 14 Polarization: 16.00 SS G_CDS: -5.03 Total: 10.97 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.56 Total: 45.86 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.91 -9.04 -36.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276874608.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.947 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds