Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30517 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48499 * 109.46965 * 274.98368 * 3 2 1 5 5 H 1.48496 * 109.47306 * 34.98657 * 3 2 1 6 6 H 1.48503 * 109.47036 * 154.98784 * 3 2 1 7 7 C 1.40430 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00486 * 186.00546 * 7 2 1 9 9 C 1.40373 * 119.99817 * 5.99804 * 7 2 1 10 10 N 1.33193 * 126.68382 * 174.32908 * 9 7 2 11 11 C 1.34296 * 105.48067 * 180.02562 * 10 9 7 12 12 C 1.48453 * 126.19962 * 179.97438 * 11 10 9 13 13 C 1.39314 * 120.11720 * 359.71986 * 12 11 10 14 14 C 1.38033 * 119.87939 * 180.27300 * 13 12 11 15 15 C 1.38320 * 120.11396 * 0.03186 * 14 13 12 16 16 C 1.50703 * 119.87653 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47009 * 269.97613 * 16 15 14 18 18 F 1.39905 * 109.46924 * 29.97740 * 16 15 14 19 19 F 1.39903 * 109.46955 * 149.97782 * 16 15 14 20 20 C 1.38315 * 120.24187 * 359.94775 * 15 14 13 21 21 C 1.38025 * 120.11788 * 0.04915 * 20 15 14 22 22 N 1.31259 * 107.59315 * 0.24627 * 11 10 9 23 23 O 1.21263 * 110.53298 * 359.56939 * 22 11 10 24 24 H 0.96994 * 120.00441 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.06450 * 0.26284 * 13 12 11 26 26 H 1.07992 * 119.94250 * 179.97438 * 14 13 12 27 27 H 1.08000 * 119.93855 * 180.02562 * 20 15 14 28 28 H 1.08001 * 120.05392 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.3812 2.1073 -1.3948 5 1 1.4932 2.6200 0.8027 6 1 3.5854 1.4121 0.5920 7 6 2.0074 -1.2161 -0.0005 8 1 3.0830 -1.2187 0.0973 9 6 1.3114 -2.4284 -0.1281 10 7 1.8444 -3.6429 -0.2501 11 6 0.8017 -4.4844 -0.3419 12 6 0.8761 -5.9593 -0.4935 13 6 2.1147 -6.5937 -0.5588 14 6 2.1781 -7.9648 -0.7055 15 6 1.0147 -8.7084 -0.7883 16 6 1.0902 -10.2050 -0.9490 17 9 1.1162 -10.5271 -2.3101 18 9 2.2531 -10.6819 -0.3345 19 9 -0.0287 -10.7951 -0.3514 20 6 -0.2176 -8.0836 -0.7236 21 6 -0.2924 -6.7132 -0.5769 22 7 -0.2948 -3.7657 -0.2791 23 8 -0.0262 -2.5901 -0.1517 24 1 -0.4850 0.8400 0.0004 25 1 3.0235 -6.0140 -0.4949 26 1 3.1376 -8.4576 -0.7566 27 1 -1.1228 -8.6690 -0.7883 28 1 -1.2551 -6.2263 -0.5269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045893657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -83.003449 kcal Electronic energy + Delta-G solvation = -20858.800167 eV Core-core repulsion = 16848.175075 eV Total energy + Delta-G solvation = -4010.625092 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.18519 -47.70531 -47.64589 -43.21410 -39.14287 -34.26679 -34.14762 -31.97061 -31.04065 -30.11522 -26.73483 -26.12723 -22.92290 -22.82844 -21.41370 -20.69148 -18.54335 -18.46182 -18.34884 -18.11393 -16.01815 -15.84872 -15.51391 -15.05585 -14.74120 -14.47669 -14.40030 -14.23411 -14.11474 -13.89186 -13.81620 -13.47160 -13.25472 -12.91131 -12.74390 -11.85237 -11.81104 -11.54779 -11.31926 -11.13041 -10.59880 -10.49341 -10.31509 -9.97563 -9.16576 -9.02096 -8.97750 -8.15045 -7.21614 -5.17599 0.83426 1.39738 2.65097 2.68494 2.89658 2.96152 3.04210 3.46968 3.64792 3.71451 4.02235 4.12949 4.43669 4.58131 4.87390 4.89402 4.90925 5.17623 5.39256 5.46334 5.75175 5.88295 6.13897 6.17340 6.27391 6.72172 6.78528 6.82933 7.11530 7.72121 7.91952 8.13017 8.30186 9.77111 10.10963 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.052611 B = 0.003239 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.082474 B = 8642.182702 C = 8995.639507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.760 5.760 2 C 0.070 3.930 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.412 4.412 8 H 0.116 0.884 9 C 0.304 3.696 10 N -0.603 5.603 11 C 0.178 3.822 12 C 0.056 3.944 13 C -0.089 4.089 14 C -0.074 4.074 15 C -0.194 4.194 16 C 0.511 3.489 17 F -0.179 7.179 18 F -0.179 7.179 19 F -0.180 7.180 20 C -0.073 4.073 21 C -0.100 4.100 22 N -0.448 5.448 23 O 0.056 5.944 24 H 0.294 0.706 25 H 0.147 0.853 26 H 0.136 0.864 27 H 0.135 0.865 28 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.550 -10.893 -1.220 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.156 4.156 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.450 4.450 8 H 0.134 0.866 9 C 0.115 3.885 10 N -0.347 5.347 11 C -0.093 4.093 12 C 0.054 3.946 13 C -0.109 4.109 14 C -0.092 4.092 15 C -0.196 4.196 16 C 0.457 3.543 17 F -0.160 7.160 18 F -0.160 7.160 19 F -0.161 7.161 20 C -0.091 4.091 21 C -0.120 4.120 22 N -0.174 5.174 23 O 0.005 5.995 24 H 0.105 0.895 25 H 0.164 0.836 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.914 -11.370 -1.281 11.479 hybrid contribution 0.291 0.691 -0.005 0.749 sum 1.205 -10.680 -1.286 10.824 Atomic orbital electron populations 1.69626 1.07837 1.31120 1.30144 1.26225 0.95154 1.02449 0.91739 0.85783 0.80221 0.78356 0.79578 1.18845 1.19599 1.17854 1.18633 0.95555 0.85491 1.45285 0.86634 1.24171 0.79572 0.93897 0.90885 1.72367 1.27538 0.98775 1.36002 1.23213 0.87195 0.94684 1.04159 1.17828 0.93501 0.88095 0.95172 1.21267 0.98301 0.93254 0.98059 1.20823 0.97136 0.93888 0.97388 1.19941 0.96639 0.90468 1.12578 1.18333 0.73398 0.88793 0.73796 1.93216 1.96133 1.94083 1.32616 1.93177 1.49699 1.90111 1.83059 1.93175 1.52959 1.86179 1.83778 1.20763 0.96203 0.94703 0.97468 1.21217 0.98931 0.92655 0.99226 1.74585 1.23859 0.91487 1.27463 1.85528 1.26087 1.18072 1.69859 0.89460 0.83566 0.84610 0.84676 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -18.49 12.08 55.57 0.67 -17.82 15 2 C 0.07 1.61 5.50 -17.29 -0.09 1.52 15 3 Si 0.94 16.74 29.57 -169.99 -5.03 11.71 15 4 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 6 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 7 C -0.41 -10.35 9.47 -37.95 -0.36 -10.71 15 8 H 0.12 2.72 7.86 -52.49 -0.41 2.31 15 9 C 0.30 8.28 7.80 -16.32 -0.13 8.15 15 10 N -0.60 -15.74 11.30 -11.63 -0.13 -15.87 15 11 C 0.18 4.33 7.78 -156.52 -1.22 3.12 15 12 C 0.06 1.09 5.88 -104.89 -0.62 0.47 15 13 C -0.09 -1.49 9.70 -39.26 -0.38 -1.87 15 14 C -0.07 -1.03 9.38 -39.63 -0.37 -1.40 15 15 C -0.19 -2.65 5.46 -104.56 -0.57 -3.22 15 16 C 0.51 6.37 3.36 36.01 0.12 6.50 15 17 F -0.18 -2.28 17.30 2.25 0.04 -2.24 15 18 F -0.18 -2.21 16.45 2.25 0.04 -2.17 15 19 F -0.18 -2.21 16.45 2.25 0.04 -2.18 15 20 C -0.07 -1.02 9.38 -39.63 -0.37 -1.39 15 21 C -0.10 -1.68 9.69 -39.26 -0.38 -2.06 15 22 N -0.45 -11.68 11.84 31.47 0.37 -11.30 15 23 O 0.06 1.57 9.74 15.16 0.15 1.72 15 24 H 0.29 6.30 8.29 -40.82 -0.34 5.96 15 25 H 0.15 2.47 7.86 -52.49 -0.41 2.06 15 26 H 0.14 1.54 7.59 -52.49 -0.40 1.14 15 27 H 0.14 1.53 7.59 -52.49 -0.40 1.13 15 28 H 0.14 2.33 7.86 -52.49 -0.41 1.91 15 LS Contribution 276.50 15.07 4.17 4.17 Total: -1.00 -27.74 276.50 -5.23 -32.96 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -1.17 Total: 1.93 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -4.37 Total: -0.91 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: 0.91 Total: -44.99 kcal Atomic # 8 Polarization: 1.57 SS G_CDS: 0.15 Total: 1.72 kcal Atomic # 9 Polarization: -6.70 SS G_CDS: 0.11 Total: -6.59 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -27.74 -5.23 -32.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045893657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.041 kcal (2) G-P(sol) polarization free energy of solvation -27.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds