Wall clock time and date at job start Wed Apr 15 2020 11:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30517 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48499 * 109.46965 * 274.98368 * 3 2 1 5 5 H 1.48496 * 109.47306 * 34.98657 * 3 2 1 6 6 H 1.48503 * 109.47036 * 154.98784 * 3 2 1 7 7 C 1.40430 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00486 * 186.00546 * 7 2 1 9 9 C 1.40373 * 119.99817 * 5.99804 * 7 2 1 10 10 N 1.33193 * 126.68382 * 174.32908 * 9 7 2 11 11 C 1.34296 * 105.48067 * 180.02562 * 10 9 7 12 12 C 1.48453 * 126.19962 * 179.97438 * 11 10 9 13 13 C 1.39314 * 120.11720 * 359.71986 * 12 11 10 14 14 C 1.38033 * 119.87939 * 180.27300 * 13 12 11 15 15 C 1.38320 * 120.11396 * 0.03186 * 14 13 12 16 16 C 1.50703 * 119.87653 * 179.97438 * 15 14 13 17 17 F 1.39902 * 109.47009 * 269.97613 * 16 15 14 18 18 F 1.39905 * 109.46924 * 29.97740 * 16 15 14 19 19 F 1.39903 * 109.46955 * 149.97782 * 16 15 14 20 20 C 1.38315 * 120.24187 * 359.94775 * 15 14 13 21 21 C 1.38025 * 120.11788 * 0.04915 * 20 15 14 22 22 N 1.31259 * 107.59315 * 0.24627 * 11 10 9 23 23 O 1.21263 * 110.53298 * 359.56939 * 22 11 10 24 24 H 0.96994 * 120.00441 * 359.97438 * 1 2 3 25 25 H 1.07991 * 120.06450 * 0.26284 * 13 12 11 26 26 H 1.07992 * 119.94250 * 179.97438 * 14 13 12 27 27 H 1.08000 * 119.93855 * 180.02562 * 20 15 14 28 28 H 1.08001 * 120.05392 * 179.97438 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2391 1.6178 0.0000 4 1 2.3812 2.1073 -1.3948 5 1 1.4932 2.6200 0.8027 6 1 3.5854 1.4121 0.5920 7 6 2.0074 -1.2161 -0.0005 8 1 3.0830 -1.2187 0.0973 9 6 1.3114 -2.4284 -0.1281 10 7 1.8444 -3.6429 -0.2501 11 6 0.8017 -4.4844 -0.3419 12 6 0.8761 -5.9593 -0.4935 13 6 2.1147 -6.5937 -0.5588 14 6 2.1781 -7.9648 -0.7055 15 6 1.0147 -8.7084 -0.7883 16 6 1.0902 -10.2050 -0.9490 17 9 1.1162 -10.5271 -2.3101 18 9 2.2531 -10.6819 -0.3345 19 9 -0.0287 -10.7951 -0.3514 20 6 -0.2176 -8.0836 -0.7236 21 6 -0.2924 -6.7132 -0.5769 22 7 -0.2948 -3.7657 -0.2791 23 8 -0.0262 -2.5901 -0.1517 24 1 -0.4850 0.8400 0.0004 25 1 3.0235 -6.0140 -0.4949 26 1 3.1376 -8.4576 -0.7566 27 1 -1.1228 -8.6690 -0.7883 28 1 -1.2551 -6.2263 -0.5269 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045893657.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:36 Heat of formation + Delta-G solvation = -99.674279 kcal Electronic energy + Delta-G solvation = -20859.523068 eV Core-core repulsion = 16848.175075 eV Total energy + Delta-G solvation = -4011.347993 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -51.18153 -48.68949 -48.64212 -45.11906 -40.41259 -36.13153 -35.91240 -33.54252 -32.29146 -31.82017 -28.61430 -27.40752 -24.40321 -24.21721 -23.09638 -22.27755 -20.01343 -19.50867 -19.45408 -19.33481 -17.98148 -17.57664 -17.14925 -16.50738 -16.00942 -15.73056 -15.51183 -15.38069 -15.10476 -15.02774 -14.88688 -14.79674 -14.44716 -14.22042 -14.13569 -13.66844 -13.44067 -13.10073 -12.61330 -12.39946 -12.27249 -12.20063 -11.96551 -11.65261 -11.12407 -10.73302 -10.18642 -9.81867 -8.99555 -7.14667 -0.49464 0.17776 0.96019 1.41315 1.51341 1.59784 1.61993 1.89395 2.14477 2.58527 2.63789 2.95277 2.99083 3.01291 3.26569 3.40353 3.65049 3.78825 4.03600 4.16589 4.45454 4.52695 4.80034 4.85798 4.91492 5.02103 5.32688 5.43099 5.58460 5.80270 5.99232 6.20657 6.39558 8.01319 8.16178 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.052611 B = 0.003239 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.082474 B = 8642.182702 C = 8995.639507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.029 3.971 3 Si 1.022 2.978 4 H -0.256 1.256 5 H -0.259 1.259 6 H -0.246 1.246 7 C -0.428 4.428 8 H 0.126 0.874 9 C 0.272 3.728 10 N -0.625 5.625 11 C 0.188 3.812 12 C 0.014 3.986 13 C -0.090 4.090 14 C -0.061 4.061 15 C -0.184 4.184 16 C 0.521 3.479 17 F -0.177 7.177 18 F -0.175 7.175 19 F -0.175 7.175 20 C -0.061 4.061 21 C -0.101 4.101 22 N -0.475 5.475 23 O 0.020 5.980 24 H 0.307 0.693 25 H 0.139 0.861 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.494 -11.710 -1.402 12.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.194 4.194 3 Si 0.839 3.161 4 H -0.180 1.180 5 H -0.183 1.183 6 H -0.169 1.169 7 C -0.465 4.465 8 H 0.143 0.857 9 C 0.084 3.916 10 N -0.370 5.370 11 C -0.084 4.084 12 C 0.012 3.988 13 C -0.110 4.110 14 C -0.079 4.079 15 C -0.186 4.186 16 C 0.467 3.533 17 F -0.159 7.159 18 F -0.156 7.156 19 F -0.157 7.157 20 C -0.079 4.079 21 C -0.121 4.121 22 N -0.208 5.208 23 O -0.025 6.025 24 H 0.119 0.881 25 H 0.157 0.843 26 H 0.185 0.815 27 H 0.184 0.816 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.845 -12.172 -1.457 12.397 hybrid contribution -0.006 0.800 0.043 0.801 sum 1.839 -11.372 -1.414 11.606 Atomic orbital electron populations 1.69684 1.09757 1.33148 1.29335 1.27401 0.95913 1.05853 0.90227 0.84587 0.78834 0.72687 0.80031 1.18012 1.18257 1.16926 1.19187 0.96275 0.86042 1.44995 0.85671 1.24784 0.79900 0.95075 0.91844 1.72338 1.28309 0.98915 1.37398 1.23997 0.86258 0.96752 1.01353 1.17987 0.95751 0.85836 0.99194 1.21240 0.96987 0.94519 0.98289 1.21063 0.98773 0.92473 0.95592 1.20179 0.96422 0.91502 1.10542 1.18009 0.73647 0.87754 0.73870 1.93230 1.96141 1.93959 1.32524 1.93196 1.49476 1.89944 1.82990 1.93194 1.52773 1.85981 1.83714 1.21011 0.97708 0.93452 0.95714 1.21210 0.97800 0.93781 0.99317 1.74499 1.24647 0.91241 1.30412 1.85459 1.26374 1.19018 1.71625 0.88110 0.84304 0.81492 0.81583 0.84745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.26 12.08 21.91 0.26 -38.99 15 2 C 0.03 1.32 5.50 85.42 0.47 1.79 15 3 Si 1.02 33.31 29.57 68.60 2.03 35.34 15 4 H -0.26 -8.01 7.11 99.48 0.71 -7.31 15 5 H -0.26 -7.87 7.11 99.48 0.71 -7.16 15 6 H -0.25 -7.63 7.11 99.48 0.71 -6.93 15 7 C -0.43 -22.07 9.47 23.32 0.22 -21.85 15 8 H 0.13 5.99 7.86 -2.91 -0.02 5.97 15 9 C 0.27 15.49 7.80 85.06 0.66 16.15 15 10 N -0.62 -34.14 11.30 -305.09 -3.45 -37.59 15 11 C 0.19 9.58 7.78 137.45 1.07 10.65 15 12 C 0.01 0.56 5.88 -20.04 -0.12 0.44 15 13 C -0.09 -3.00 9.70 22.48 0.22 -2.78 15 14 C -0.06 -1.55 9.38 22.24 0.21 -1.34 15 15 C -0.18 -4.49 5.46 -19.83 -0.11 -4.60 15 16 C 0.52 11.15 3.36 71.24 0.24 11.39 15 17 F -0.18 -3.90 17.30 44.97 0.78 -3.12 15 18 F -0.17 -3.68 16.45 44.97 0.74 -2.94 15 19 F -0.18 -3.70 16.45 44.97 0.74 -2.96 15 20 C -0.06 -1.55 9.38 22.24 0.21 -1.34 15 21 C -0.10 -3.35 9.69 22.48 0.22 -3.13 15 22 N -0.48 -26.19 11.84 -56.08 -0.66 -26.86 15 23 O 0.02 1.21 9.74 64.30 0.63 1.83 15 24 H 0.31 13.22 8.29 -92.71 -0.77 12.45 15 25 H 0.14 4.76 7.86 -2.92 -0.02 4.73 15 26 H 0.17 3.18 7.59 -2.91 -0.02 3.16 15 27 H 0.17 3.18 7.59 -2.91 -0.02 3.16 15 28 H 0.13 4.56 7.86 -2.91 -0.02 4.54 15 Total: -1.00 -62.90 276.50 5.60 -57.30 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: 1.24 Total: 12.61 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 3.29 Total: 5.37 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -3.85 Total: -103.44 kcal Atomic # 8 Polarization: 1.21 SS G_CDS: 0.63 Total: 1.83 kcal Atomic # 9 Polarization: -11.27 SS G_CDS: 2.26 Total: -9.01 kcal Atomic # 14 Polarization: 33.31 SS G_CDS: 2.03 Total: 35.34 kcal Total: -62.90 5.60 -57.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045893657.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.369 kcal (2) G-P(sol) polarization free energy of solvation -62.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds