Wall clock time and date at job start Wed Apr 15 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48506 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47390 * 300.00301 * 3 2 1 6 6 H 1.48502 * 109.46917 * 60.00732 * 3 2 1 7 7 C 1.38947 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99892 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99679 * 180.02562 * 10 9 7 13 13 O 1.42900 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.35902 * 117.00165 * 180.02562 * 13 12 10 15 15 C 1.38710 * 120.04051 * 359.97438 * 14 13 12 16 16 C 1.38338 * 119.91688 * 180.02562 * 15 14 13 17 17 F 1.35109 * 119.99582 * 180.02562 * 16 15 14 18 18 C 1.38521 * 120.00896 * 0.02562 * 16 15 14 19 19 C 1.38209 * 120.08183 * 359.97438 * 18 16 15 20 20 C 1.38171 * 120.08013 * 0.28263 * 19 18 16 21 21 N 1.48006 * 120.00129 * 179.70365 * 20 19 18 22 22 O 1.21794 * 120.00085 * 359.97438 * 21 20 19 23 23 O 1.21803 * 120.00099 * 179.97438 * 21 20 19 24 24 H 0.96998 * 119.99943 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99919 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47615 * 60.00101 * 12 10 9 27 27 H 1.08993 * 109.47305 * 299.99372 * 12 10 9 28 28 H 1.07999 * 120.03801 * 0.02562 * 15 14 13 29 29 H 1.07994 * 119.95702 * 179.97438 * 18 16 15 30 30 H 1.08002 * 119.95546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 8 2.1724 -5.9491 -0.0016 14 6 1.6530 -7.2049 -0.0027 15 6 0.2780 -7.3877 -0.0028 16 6 -0.2480 -8.6672 -0.0034 17 9 -1.5870 -8.8470 -0.0040 18 6 0.5981 -9.7640 -0.0034 19 6 1.9681 -9.5821 -0.0033 20 6 2.4973 -8.3057 0.0027 21 7 3.9647 -8.1130 0.0094 22 8 4.7059 -9.0794 0.0101 23 8 4.4312 -6.9878 0.0141 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6175 -4.9205 -0.8913 27 1 0.6169 -4.9209 0.8886 28 1 -0.3811 -6.5321 -0.0024 29 1 0.1866 -10.7624 -0.0034 30 1 2.6259 -10.4387 -0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076609359.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:41 Heat of formation + Delta-G solvation = -88.084356 kcal Electronic energy + Delta-G solvation = -21489.281068 eV Core-core repulsion = 17589.523167 eV Total energy + Delta-G solvation = -3899.757901 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.61974 -42.03252 -40.43281 -38.52150 -37.39977 -36.18708 -34.08461 -31.98046 -31.44870 -31.01099 -28.46732 -26.22084 -24.90345 -23.22916 -22.63377 -19.81188 -19.55813 -18.71275 -18.50916 -18.09775 -17.38946 -17.03570 -16.54230 -16.43360 -15.97324 -15.78732 -15.21184 -14.83024 -14.27893 -14.02852 -13.93001 -13.73137 -13.02959 -12.58002 -12.20571 -12.05455 -11.65648 -11.33301 -11.29888 -11.08748 -10.88944 -10.81564 -10.41688 -10.34287 -9.81072 -9.66616 -9.03082 -8.59810 -8.13779 -6.55690 -3.97337 -0.28387 0.53142 1.24191 1.48831 2.52751 2.78229 3.08769 3.22299 3.30385 3.42848 3.63557 3.89964 4.08435 4.14460 4.30108 4.50007 4.68260 5.00552 5.02505 5.05215 5.20412 5.27841 5.36190 5.39902 5.83555 5.95350 6.47109 6.81107 7.44070 7.86675 7.87788 8.41763 9.02464 9.31787 9.81706 10.61623 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.022321 B = 0.004031 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.147185 B = 6944.205575 C = 8183.200642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.301 4.301 8 H 0.108 0.892 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.558 6.558 12 C 0.038 3.962 13 O -0.239 6.239 14 C 0.234 3.766 15 C -0.258 4.258 16 C 0.196 3.804 17 F -0.119 7.119 18 C -0.201 4.201 19 C 0.012 3.988 20 C -0.099 4.099 21 N 0.031 4.969 22 O -0.192 6.192 23 O -0.107 6.107 24 H 0.273 0.727 25 H 0.393 0.607 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.166 0.834 29 H 0.158 0.842 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 -17.685 -0.012 18.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.430 4.430 8 H 0.126 0.874 9 N -0.191 5.191 10 C 0.221 3.779 11 O -0.440 6.440 12 C -0.041 4.041 13 O -0.146 6.146 14 C 0.182 3.818 15 C -0.279 4.279 16 C 0.176 3.824 17 F -0.097 7.097 18 C -0.221 4.221 19 C -0.007 4.007 20 C -0.184 4.184 21 N 0.551 4.449 22 O -0.397 6.397 23 O -0.333 6.333 24 H 0.083 0.917 25 H 0.227 0.773 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.184 0.816 29 H 0.176 0.824 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.164 -17.610 -0.016 18.351 hybrid contribution -0.591 0.872 -0.002 1.054 sum -5.755 -16.737 -0.018 17.699 Atomic orbital electron populations 1.69611 1.06025 1.28437 1.49886 1.25301 0.95689 0.99887 0.96806 0.85739 0.79852 0.80641 0.77812 1.18956 1.20606 1.20601 1.19805 0.93605 0.81593 1.47949 0.87406 1.41680 1.09221 1.04001 1.64155 1.19077 0.88428 0.83666 0.86697 1.90655 1.12980 1.86247 1.54099 1.22915 0.91970 0.86221 1.02980 1.86587 1.34244 1.09995 1.83754 1.18501 0.90277 0.85719 0.87344 1.21296 0.93936 0.98603 1.14018 1.17622 0.77623 0.93333 0.93787 1.91592 1.29466 1.96077 1.92565 1.20981 0.91865 0.99544 1.09696 1.20711 0.95301 0.94938 0.89755 1.20553 0.80725 0.94072 1.23029 1.43264 1.02387 1.01016 0.98278 1.94482 1.56511 1.33035 1.55653 1.94783 1.78732 1.09026 1.50727 0.91676 0.77323 0.89439 0.89431 0.81648 0.82393 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.34 13.05 55.50 0.72 -22.62 16 2 C 0.03 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.08 9.68 -14.93 -0.14 -8.22 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.69 16 9 N -0.55 -13.26 5.29 -10.96 -0.06 -13.32 16 10 C 0.44 10.02 7.86 -10.98 -0.09 9.93 16 11 O -0.56 -15.39 16.08 -14.36 -0.23 -15.62 16 12 C 0.04 0.61 5.22 36.00 0.19 0.80 16 13 O -0.24 -4.22 7.68 -49.79 -0.38 -4.60 16 14 C 0.23 3.23 6.67 -39.23 -0.26 2.97 16 15 C -0.26 -2.71 9.02 -39.37 -0.35 -3.07 16 16 C 0.20 1.76 7.30 -39.44 -0.29 1.47 16 17 F -0.12 -1.06 17.27 2.25 0.04 -1.02 16 18 C -0.20 -1.51 10.02 -39.49 -0.40 -1.90 16 19 C 0.01 0.11 9.55 -39.62 -0.38 -0.27 16 20 C -0.10 -1.33 6.87 -79.80 -0.55 -1.88 16 21 N 0.03 0.53 4.45 34.04 0.15 0.68 16 22 O -0.19 -3.10 18.45 -29.46 -0.54 -3.64 16 23 O -0.11 -2.17 17.24 -36.50 -0.63 -2.80 16 24 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 25 H 0.39 8.74 7.90 -40.82 -0.32 8.42 16 26 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 27 H 0.09 1.15 7.66 -51.93 -0.40 0.75 16 28 H 0.17 1.46 6.30 -52.49 -0.33 1.13 16 29 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 30 H 0.17 1.17 7.61 -52.49 -0.40 0.77 16 LS Contribution 288.70 15.07 4.35 4.35 Total: -1.00 -32.62 288.70 -5.75 -38.36 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -1.78 Total: 4.48 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -2.37 Total: 0.39 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.82 Total: -35.26 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -1.79 Total: -26.65 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.62 -5.75 -38.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609359.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.721 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds