Wall clock time and date at job start Wed Apr 15 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86800 * 119.99809 * 2 1 4 4 H 1.48506 * 109.46819 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47390 * 300.00301 * 3 2 1 6 6 H 1.48502 * 109.46917 * 60.00732 * 3 2 1 7 7 C 1.38947 * 120.00137 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00394 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.34783 * 119.99892 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50695 * 119.99679 * 180.02562 * 10 9 7 13 13 O 1.42900 * 109.46940 * 179.97438 * 12 10 9 14 14 C 1.35902 * 117.00165 * 180.02562 * 13 12 10 15 15 C 1.38710 * 120.04051 * 359.97438 * 14 13 12 16 16 C 1.38338 * 119.91688 * 180.02562 * 15 14 13 17 17 F 1.35109 * 119.99582 * 180.02562 * 16 15 14 18 18 C 1.38521 * 120.00896 * 0.02562 * 16 15 14 19 19 C 1.38209 * 120.08183 * 359.97438 * 18 16 15 20 20 C 1.38171 * 120.08013 * 0.28263 * 19 18 16 21 21 N 1.48006 * 120.00129 * 179.70365 * 20 19 18 22 22 O 1.21794 * 120.00085 * 359.97438 * 21 20 19 23 23 O 1.21803 * 120.00099 * 179.97438 * 21 20 19 24 24 H 0.96998 * 119.99943 * 359.97438 * 1 2 3 25 25 H 0.96999 * 119.99919 * 0.02562 * 9 7 2 26 26 H 1.08996 * 109.47615 * 60.00101 * 12 10 9 27 27 H 1.08993 * 109.47305 * 299.99372 * 12 10 9 28 28 H 1.07999 * 120.03801 * 0.02562 * 15 14 13 29 29 H 1.07994 * 119.95702 * 179.97438 * 18 16 15 30 30 H 1.08002 * 119.95546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3963 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 8 2.1724 -5.9491 -0.0016 14 6 1.6530 -7.2049 -0.0027 15 6 0.2780 -7.3877 -0.0028 16 6 -0.2480 -8.6672 -0.0034 17 9 -1.5870 -8.8470 -0.0040 18 6 0.5981 -9.7640 -0.0034 19 6 1.9681 -9.5821 -0.0033 20 6 2.4973 -8.3057 0.0027 21 7 3.9647 -8.1130 0.0094 22 8 4.7059 -9.0794 0.0101 23 8 4.4312 -6.9878 0.0141 24 1 -0.4850 0.8400 0.0004 25 1 0.3534 -2.3906 -0.0005 26 1 0.6175 -4.9205 -0.8913 27 1 0.6169 -4.9209 0.8886 28 1 -0.3811 -6.5321 -0.0024 29 1 0.1866 -10.7624 -0.0034 30 1 2.6259 -10.4387 -0.0029 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076609359.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:41 Heat of formation + Delta-G solvation = -109.600961 kcal Electronic energy + Delta-G solvation = -21490.214098 eV Core-core repulsion = 17589.523167 eV Total energy + Delta-G solvation = -3900.690931 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.33862 -43.21213 -41.56887 -40.08241 -38.64464 -37.46483 -36.06615 -33.44416 -32.86374 -31.92310 -29.88116 -27.32707 -26.69330 -24.24515 -23.60346 -21.48738 -20.66598 -20.14819 -19.78527 -19.45784 -18.58741 -18.17843 -17.76179 -17.53876 -17.01363 -16.85577 -16.63728 -16.06368 -15.79089 -15.30895 -15.29956 -14.69841 -14.47877 -13.72651 -13.57631 -13.47127 -12.96819 -12.85426 -12.62593 -12.47506 -12.31913 -12.16872 -12.15800 -12.12498 -11.59924 -10.62303 -10.51255 -10.11490 -9.92839 -8.54100 -6.03483 -1.31148 -0.25920 0.13277 0.41148 1.33416 1.36866 1.45153 1.58743 1.86688 1.96215 2.29775 2.64365 2.95352 3.11478 3.18525 3.32179 3.61704 3.69136 3.84369 4.06146 4.20041 4.29321 4.38494 4.56869 4.69794 5.13260 5.25771 5.36878 5.71026 5.92401 6.49040 6.53208 7.03899 7.39593 7.96123 8.62979 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.022321 B = 0.004031 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.147185 B = 6944.205575 C = 8183.200642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.004 4.004 3 Si 0.993 3.007 4 H -0.276 1.276 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.337 4.337 8 H 0.078 0.922 9 N -0.557 5.557 10 C 0.431 3.569 11 O -0.615 6.615 12 C 0.051 3.949 13 O -0.280 6.280 14 C 0.210 3.790 15 C -0.254 4.254 16 C 0.208 3.792 17 F -0.112 7.112 18 C -0.171 4.171 19 C 0.022 3.978 20 C -0.118 4.118 21 N 0.036 4.964 22 O -0.148 6.148 23 O -0.219 6.219 24 H 0.281 0.719 25 H 0.402 0.598 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.182 0.818 29 H 0.203 0.797 30 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.011 -20.160 -0.020 21.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.205 4.205 3 Si 0.816 3.184 4 H -0.201 1.201 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.467 4.467 8 H 0.096 0.904 9 N -0.195 5.195 10 C 0.218 3.782 11 O -0.501 6.501 12 C -0.027 4.027 13 O -0.189 6.189 14 C 0.159 3.841 15 C -0.274 4.274 16 C 0.188 3.812 17 F -0.090 7.090 18 C -0.190 4.190 19 C 0.003 3.997 20 C -0.204 4.204 21 N 0.548 4.452 22 O -0.370 6.370 23 O -0.419 6.419 24 H 0.090 0.910 25 H 0.237 0.763 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.199 0.801 29 H 0.220 0.780 30 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.882 -19.879 -0.023 21.384 hybrid contribution 0.104 1.275 0.000 1.279 sum -7.778 -18.604 -0.023 20.164 Atomic orbital electron populations 1.69646 1.06681 1.29607 1.49368 1.26005 0.96570 1.02225 0.95708 0.84876 0.78002 0.76968 0.78547 1.20052 1.19324 1.19317 1.19697 0.92799 0.83597 1.50566 0.90373 1.41677 1.09501 1.03925 1.64388 1.20204 0.88166 0.85618 0.84250 1.90620 1.15893 1.87565 1.56028 1.22722 0.90819 0.82815 1.06318 1.86537 1.35584 1.11608 1.85193 1.18721 0.91713 0.84202 0.89425 1.21413 0.92385 1.00286 1.13324 1.17695 0.77971 0.93092 0.92449 1.91626 1.29114 1.95968 1.92262 1.21440 0.90493 1.01022 1.06042 1.21121 0.96535 0.93603 0.88395 1.20941 0.78037 0.95972 1.25454 1.43741 1.04095 1.00306 0.97091 1.94397 1.58044 1.32463 1.52145 1.94822 1.80137 1.10025 1.56876 0.90954 0.76302 0.85896 0.85893 0.80052 0.77983 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.13 13.05 21.66 0.28 -46.84 16 2 C 0.00 -0.22 5.50 84.92 0.47 0.25 16 3 Si 0.99 42.11 29.55 68.60 2.03 44.14 16 4 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 7 C -0.34 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 9 N -0.56 -27.62 5.29 -306.98 -1.62 -29.24 16 10 C 0.43 20.66 7.86 87.65 0.69 21.35 16 11 O -0.62 -36.51 16.08 15.97 0.26 -36.25 16 12 C 0.05 1.65 5.22 71.23 0.37 2.02 16 13 O -0.28 -10.27 7.68 -63.42 -0.49 -10.76 16 14 C 0.21 5.65 6.67 22.50 0.15 5.80 16 15 C -0.25 -4.58 9.02 22.41 0.20 -4.38 16 16 C 0.21 2.76 7.30 22.36 0.16 2.92 16 17 F -0.11 -1.43 17.27 44.97 0.78 -0.66 16 18 C -0.17 -1.60 10.02 22.33 0.22 -1.37 16 19 C 0.02 0.32 9.55 22.25 0.21 0.53 16 20 C -0.12 -3.07 6.87 36.48 0.25 -2.82 16 21 N 0.04 1.27 4.45 -46.23 -0.21 1.06 16 22 O -0.15 -4.69 18.45 18.89 0.35 -4.34 16 23 O -0.22 -9.74 17.24 25.61 0.44 -9.30 16 24 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 25 H 0.40 18.08 7.90 -92.71 -0.73 17.35 16 26 H 0.12 3.05 7.66 -2.39 -0.02 3.03 16 27 H 0.12 3.05 7.66 -2.39 -0.02 3.03 16 28 H 0.18 2.58 6.30 -2.91 -0.02 2.56 16 29 H 0.20 0.24 8.06 -2.91 -0.02 0.22 16 30 H 0.20 1.75 7.61 -2.91 -0.02 1.73 16 Total: -1.00 -78.04 288.70 5.86 -72.18 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.50 Total: 13.80 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 3.54 Total: 6.21 kcal Atomic # 7 Polarization: -73.47 SS G_CDS: -1.55 Total: -75.02 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: 0.56 Total: -60.65 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.78 Total: -0.66 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -78.04 5.86 -72.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076609359.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.420 kcal (2) G-P(sol) polarization free energy of solvation -78.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds