Wall clock time and date at job start Wed Apr 15 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99559 * 2 1 4 4 H 1.48497 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47035 * 299.99581 * 3 2 1 6 6 H 1.48495 * 109.47403 * 59.99557 * 3 2 1 7 7 C 1.38945 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99995 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00397 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99533 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00250 * 179.97438 * 10 9 7 13 13 O 1.42896 * 109.46911 * 179.97438 * 12 10 9 14 14 C 1.35960 * 116.99980 * 179.97438 * 13 12 10 15 15 C 1.38660 * 120.05777 * 0.29846 * 14 13 12 16 16 C 1.38183 * 119.96633 * 180.27919 * 15 14 13 17 17 C 1.38271 * 120.09338 * 359.44265 * 16 15 14 18 18 N 1.48003 * 119.93584 * 180.27917 * 17 16 15 19 19 O 1.21800 * 120.00237 * 0.02562 * 18 17 16 20 20 O 1.21795 * 120.00178 * 180.02562 * 18 17 16 21 21 C 1.38250 * 120.12488 * 0.25977 * 17 16 15 22 22 C 1.38334 * 120.03274 * 0.02562 * 21 17 16 23 23 F 1.35100 * 120.05091 * 180.02562 * 22 21 17 24 24 H 0.97000 * 120.00281 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99842 * 359.97438 * 9 7 2 26 26 H 1.08992 * 109.46943 * 60.00327 * 12 10 9 27 27 H 1.08994 * 109.46849 * 299.99981 * 12 10 9 28 28 H 1.07995 * 120.02212 * 0.02562 * 15 14 13 29 29 H 1.08002 * 119.95612 * 179.72832 * 16 15 14 30 30 H 1.08002 * 119.98193 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3236 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 8 2.1727 -5.9490 0.0004 14 6 1.6532 -7.2054 0.0013 15 6 0.2787 -7.3886 -0.0033 16 6 -0.2473 -8.6664 0.0035 17 6 0.5950 -9.7629 0.0033 18 7 0.0278 -11.1299 0.0044 19 8 -1.1798 -11.2882 0.0049 20 8 0.7687 -12.0967 0.0047 21 6 1.9660 -9.5847 0.0017 22 6 2.4982 -8.3078 0.0009 23 9 3.8379 -8.1333 -0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.6171 -4.9209 -0.8886 27 1 0.6178 -4.9205 0.8913 28 1 -0.3804 -6.5331 -0.0081 29 1 -1.3179 -8.8088 0.0043 30 1 2.6218 -10.4428 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076610438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:43 Heat of formation + Delta-G solvation = -91.270787 kcal Electronic energy + Delta-G solvation = -20973.309172 eV Core-core repulsion = 17073.413097 eV Total energy + Delta-G solvation = -3899.896075 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.19191 -42.38319 -40.58958 -38.63616 -37.50162 -36.76630 -34.20741 -31.64615 -31.64195 -31.35311 -28.72047 -26.37902 -24.91272 -23.55145 -22.60723 -19.99834 -19.67328 -18.95155 -18.67697 -18.16268 -17.75581 -17.08452 -16.71759 -16.67396 -15.90978 -15.59194 -15.33956 -14.87391 -14.39913 -13.96356 -13.68661 -13.47274 -13.25550 -12.79129 -12.56506 -11.91939 -11.75502 -11.71232 -11.50379 -11.40805 -11.34314 -11.19190 -10.50890 -10.43025 -9.79009 -9.77367 -8.96814 -8.74347 -8.24819 -6.65369 -4.07689 -0.44199 0.34763 1.04005 1.11904 2.47167 2.72949 3.00870 3.15709 3.22883 3.52152 3.52267 3.87821 4.02214 4.13210 4.16390 4.61055 4.71161 4.75394 4.93892 4.98429 5.21193 5.27423 5.30948 5.32240 5.68797 5.85964 6.12853 6.75309 7.34299 7.42768 7.77033 8.30178 8.91901 9.20674 9.69717 10.51562 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.039824 B = 0.003049 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.930600 B = 9180.595924 C = 9868.381477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.304 4.304 8 H 0.108 0.892 9 N -0.548 5.548 10 C 0.435 3.565 11 O -0.571 6.571 12 C 0.042 3.958 13 O -0.258 6.258 14 C 0.164 3.836 15 C -0.190 4.190 16 C -0.016 4.016 17 C -0.070 4.070 18 N 0.038 4.962 19 O -0.162 6.162 20 O -0.164 6.164 21 C -0.055 4.055 22 C 0.074 3.926 23 F -0.110 7.110 24 H 0.275 0.725 25 H 0.394 0.606 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.166 0.834 29 H 0.163 0.837 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.678 -14.633 0.001 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.433 4.433 8 H 0.125 0.875 9 N -0.185 5.185 10 C 0.219 3.781 11 O -0.454 6.454 12 C -0.037 4.037 13 O -0.167 6.167 14 C 0.113 3.887 15 C -0.210 4.210 16 C -0.035 4.035 17 C -0.154 4.154 18 N 0.556 4.444 19 O -0.377 6.377 20 O -0.379 6.379 21 C -0.074 4.074 22 C 0.053 3.947 23 F -0.089 7.089 24 H 0.085 0.915 25 H 0.228 0.772 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.183 0.817 29 H 0.180 0.820 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.446 -13.709 -0.001 13.925 hybrid contribution -0.425 0.557 0.002 0.701 sum -2.871 -13.152 0.001 13.461 Atomic orbital electron populations 1.69603 1.06034 1.28630 1.49300 1.25324 0.95712 0.99968 0.96569 0.85728 0.79781 0.80538 0.77933 1.19003 1.20493 1.20497 1.19792 0.93585 0.81591 1.48337 0.87459 1.41684 1.09314 1.04034 1.63481 1.19105 0.88342 0.83792 0.86861 1.90611 1.13292 1.86452 1.55093 1.22857 0.91868 0.85824 1.03117 1.86369 1.35108 1.10393 1.84864 1.19604 0.92052 0.86028 0.90976 1.21273 0.93270 0.98470 1.07964 1.20881 1.01628 0.89515 0.91464 1.20538 0.93285 0.82376 1.19194 1.43383 1.00873 1.02791 0.97346 1.94542 0.97182 1.92292 1.53670 1.94547 1.58274 1.31338 1.53760 1.20658 0.93721 0.97260 0.95803 1.16438 0.78282 0.90384 1.09574 1.91622 1.27532 1.95754 1.93954 0.91517 0.77185 0.89326 0.89313 0.81688 0.81953 0.81180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.57 13.05 55.50 0.72 -21.85 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 19.77 29.55 -169.99 -5.02 14.75 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.30 -7.93 9.68 -14.93 -0.14 -8.07 16 8 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 9 N -0.55 -12.65 5.29 -10.96 -0.06 -12.70 16 10 C 0.43 9.50 7.86 -10.99 -0.09 9.41 16 11 O -0.57 -15.17 16.08 -14.36 -0.23 -15.40 16 12 C 0.04 0.62 5.22 36.01 0.19 0.81 16 13 O -0.26 -4.17 9.53 -39.52 -0.38 -4.55 16 14 C 0.16 2.02 6.69 -39.18 -0.26 1.76 16 15 C -0.19 -1.73 9.04 -39.45 -0.36 -2.08 16 16 C -0.02 -0.13 9.55 -39.59 -0.38 -0.51 16 17 C -0.07 -0.73 6.85 -79.94 -0.55 -1.27 16 18 N 0.04 0.46 4.45 33.97 0.15 0.61 16 19 O -0.16 -2.01 18.44 -29.46 -0.54 -2.56 16 20 O -0.16 -2.10 18.44 -29.46 -0.54 -2.65 16 21 C -0.05 -0.55 9.53 -39.54 -0.38 -0.93 16 22 C 0.07 0.90 7.31 -39.30 -0.29 0.61 16 23 F -0.11 -1.55 17.11 2.25 0.04 -1.51 16 24 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 25 H 0.39 8.38 7.90 -40.82 -0.32 8.06 16 26 H 0.09 1.04 7.65 -51.93 -0.40 0.64 16 27 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 28 H 0.17 1.11 6.30 -52.49 -0.33 0.77 16 29 H 0.16 1.06 7.60 -52.49 -0.40 0.66 16 30 H 0.17 1.45 7.61 -52.49 -0.40 1.05 16 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -31.08 290.70 -5.59 -36.66 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -1.76 Total: 4.51 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -2.35 Total: 0.31 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.82 Total: -33.95 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -1.69 Total: -25.15 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.08 -5.59 -36.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.608 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds