Wall clock time and date at job start Wed Apr 15 2020 11:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 119.99559 * 2 1 4 4 H 1.48497 * 109.47050 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47035 * 299.99581 * 3 2 1 6 6 H 1.48495 * 109.47403 * 59.99557 * 3 2 1 7 7 C 1.38945 * 120.00395 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99995 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00084 * 0.02562 * 7 2 1 10 10 C 1.34775 * 120.00397 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99533 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00250 * 179.97438 * 10 9 7 13 13 O 1.42896 * 109.46911 * 179.97438 * 12 10 9 14 14 C 1.35960 * 116.99980 * 179.97438 * 13 12 10 15 15 C 1.38660 * 120.05777 * 0.29846 * 14 13 12 16 16 C 1.38183 * 119.96633 * 180.27919 * 15 14 13 17 17 C 1.38271 * 120.09338 * 359.44265 * 16 15 14 18 18 N 1.48003 * 119.93584 * 180.27917 * 17 16 15 19 19 O 1.21800 * 120.00237 * 0.02562 * 18 17 16 20 20 O 1.21795 * 120.00178 * 180.02562 * 18 17 16 21 21 C 1.38250 * 120.12488 * 0.25977 * 17 16 15 22 22 C 1.38334 * 120.03274 * 0.02562 * 21 17 16 23 23 F 1.35100 * 120.05091 * 180.02562 * 22 21 17 24 24 H 0.97000 * 120.00281 * 0.02562 * 1 2 3 25 25 H 0.97002 * 119.99842 * 359.97438 * 9 7 2 26 26 H 1.08992 * 109.46943 * 60.00327 * 12 10 9 27 27 H 1.08994 * 109.46849 * 299.99981 * 12 10 9 28 28 H 1.07995 * 120.02212 * 0.02562 * 15 14 13 29 29 H 1.08002 * 119.95612 * 179.72832 * 16 15 14 30 30 H 1.08002 * 119.98193 * 179.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 0.0006 5 1 1.8893 2.3965 -1.2126 6 1 1.8892 2.3966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0890 -1.2032 0.0001 9 7 1.3236 -2.3906 0.0005 10 6 1.9975 -3.5578 0.0005 11 8 3.2104 -3.5577 0.0001 12 6 1.2440 -4.8629 0.0011 13 8 2.1727 -5.9490 0.0004 14 6 1.6532 -7.2054 0.0013 15 6 0.2787 -7.3886 -0.0033 16 6 -0.2473 -8.6664 0.0035 17 6 0.5950 -9.7629 0.0033 18 7 0.0278 -11.1299 0.0044 19 8 -1.1798 -11.2882 0.0049 20 8 0.7687 -12.0967 0.0047 21 6 1.9660 -9.5847 0.0017 22 6 2.4982 -8.3078 0.0009 23 9 3.8379 -8.1333 -0.0012 24 1 -0.4850 0.8400 -0.0004 25 1 0.3535 -2.3907 0.0005 26 1 0.6171 -4.9209 -0.8886 27 1 0.6178 -4.9205 0.8913 28 1 -0.3804 -6.5331 -0.0081 29 1 -1.3179 -8.8088 0.0043 30 1 2.6218 -10.4428 0.0020 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076610438.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:43 Heat of formation + Delta-G solvation = -110.920517 kcal Electronic energy + Delta-G solvation = -20974.161249 eV Core-core repulsion = 17073.413097 eV Total energy + Delta-G solvation = -3900.748151 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.18190 -43.28852 -41.60869 -40.10960 -38.71215 -37.69938 -36.08970 -33.45257 -32.48731 -32.30635 -30.00533 -27.42661 -26.53387 -24.48154 -23.52654 -21.50154 -20.65808 -20.16795 -19.88535 -19.53526 -18.65806 -18.17705 -17.73154 -17.65353 -17.42073 -16.69165 -16.68991 -16.21589 -15.73403 -15.23962 -15.19678 -14.62376 -14.21868 -13.85684 -13.78873 -13.57981 -12.99902 -12.88644 -12.64745 -12.48630 -12.47817 -12.33122 -12.30313 -12.13875 -11.61507 -10.56033 -10.54691 -10.12930 -9.90954 -8.55160 -6.04608 -1.33909 -0.42929 0.13394 0.24340 1.32822 1.36402 1.45463 1.57936 1.85812 1.92492 2.28707 2.66628 2.99311 3.11245 3.25075 3.30770 3.45701 3.81721 3.93055 4.02354 4.13137 4.23770 4.47094 4.53198 4.58536 4.88586 5.21626 5.35930 5.73753 5.92302 6.46163 6.47451 7.02746 7.38930 7.94500 8.61477 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.039824 B = 0.003049 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.930600 B = 9180.595924 C = 9868.381477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.003 4.003 3 Si 0.991 3.009 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.554 5.554 10 C 0.430 3.570 11 O -0.627 6.627 12 C 0.053 3.947 13 O -0.297 6.297 14 C 0.150 3.850 15 C -0.171 4.171 16 C 0.000 4.000 17 C -0.074 4.074 18 N 0.038 4.962 19 O -0.158 6.158 20 O -0.190 6.190 21 C -0.045 4.045 22 C 0.054 3.946 23 F -0.130 7.130 24 H 0.281 0.719 25 H 0.404 0.596 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.199 0.801 29 H 0.193 0.807 30 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -14.813 -0.001 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.204 4.204 3 Si 0.814 3.186 4 H -0.200 1.200 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.191 5.191 10 C 0.217 3.783 11 O -0.515 6.515 12 C -0.024 4.024 13 O -0.208 6.208 14 C 0.100 3.900 15 C -0.190 4.190 16 C -0.018 4.018 17 C -0.158 4.158 18 N 0.554 4.446 19 O -0.376 6.376 20 O -0.399 6.399 21 C -0.064 4.064 22 C 0.033 3.967 23 F -0.109 7.109 24 H 0.091 0.909 25 H 0.239 0.761 26 H 0.147 0.853 27 H 0.147 0.853 28 H 0.216 0.784 29 H 0.210 0.790 30 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -4.711 -13.934 -0.002 14.709 hybrid contribution 0.229 0.524 0.002 0.572 sum -4.482 -13.410 0.000 14.139 Atomic orbital electron populations 1.69633 1.06622 1.29665 1.49052 1.25982 0.96553 1.02200 0.95688 0.84901 0.78026 0.77127 0.78511 1.20039 1.19424 1.19432 1.19669 0.92776 0.83625 1.50699 0.90373 1.41681 1.09642 1.03947 1.63876 1.20294 0.88089 0.85791 0.84158 1.90577 1.16202 1.87781 1.56899 1.22740 0.90663 0.82042 1.06946 1.86292 1.36557 1.11820 1.86098 1.19790 0.93485 0.84393 0.92296 1.21569 0.91855 0.99646 1.05942 1.21227 1.02823 0.88492 0.89308 1.20687 0.93526 0.81964 1.19608 1.43574 1.00774 1.03251 0.96993 1.94527 0.97367 1.92523 1.53144 1.94559 1.58289 1.32064 1.55028 1.20684 0.94096 0.96869 0.94775 1.16678 0.77638 0.91219 1.11152 1.91568 1.29045 1.95917 1.94333 0.90908 0.76104 0.85298 0.85292 0.78438 0.79023 0.80170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.94 13.05 21.66 0.28 -44.66 16 2 C 0.00 -0.14 5.50 84.92 0.47 0.33 16 3 Si 0.99 40.30 29.55 68.60 2.03 42.33 16 4 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 7 C -0.34 -17.99 9.68 84.04 0.81 -17.17 16 8 H 0.08 4.53 7.16 -2.91 -0.02 4.51 16 9 N -0.55 -25.53 5.29 -306.99 -1.62 -27.15 16 10 C 0.43 18.74 7.86 87.66 0.69 19.43 16 11 O -0.63 -34.42 16.08 15.97 0.26 -34.17 16 12 C 0.05 1.45 5.22 71.24 0.37 1.82 16 13 O -0.30 -9.22 9.53 -74.06 -0.71 -9.93 16 14 C 0.15 3.39 6.69 22.53 0.15 3.54 16 15 C -0.17 -2.38 9.04 22.36 0.20 -2.18 16 16 C 0.00 0.01 9.55 22.26 0.21 0.22 16 17 C -0.07 -1.34 6.85 36.39 0.25 -1.09 16 18 N 0.04 0.84 4.45 -46.45 -0.21 0.64 16 19 O -0.16 -3.52 18.44 18.89 0.35 -3.17 16 20 O -0.19 -4.66 18.44 18.89 0.35 -4.31 16 21 C -0.04 -0.85 9.53 22.30 0.21 -0.63 16 22 C 0.05 1.26 7.31 22.45 0.16 1.43 16 23 F -0.13 -3.76 17.11 44.97 0.77 -2.99 16 24 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 25 H 0.40 16.73 7.90 -92.71 -0.73 16.00 16 26 H 0.13 2.48 7.65 -2.39 -0.02 2.46 16 27 H 0.13 2.48 7.67 -2.39 -0.02 2.46 16 28 H 0.20 1.45 6.30 -2.91 -0.02 1.43 16 29 H 0.19 1.46 7.60 -2.91 -0.02 1.44 16 30 H 0.18 2.95 7.61 -2.91 -0.02 2.92 16 Total: -1.00 -70.19 290.70 5.53 -64.66 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.50 Total: 13.06 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 3.53 Total: 5.69 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.55 Total: -71.18 kcal Atomic # 8 Polarization: -51.82 SS G_CDS: 0.25 Total: -51.57 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.77 Total: -2.99 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -70.19 5.53 -64.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076610438.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.259 kcal (2) G-P(sol) polarization free energy of solvation -70.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds