Wall clock time and date at job start Wed Apr 15 2020 11:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86808 * 119.99945 * 2 1 4 4 H 1.48506 * 109.46932 * 270.00011 * 3 2 1 5 5 H 1.48500 * 109.47023 * 29.99941 * 3 2 1 6 6 H 1.48496 * 109.47093 * 150.00361 * 3 2 1 7 7 C 1.38942 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00707 * 179.97438 * 7 2 1 9 9 N 1.37106 * 119.99752 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99727 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00369 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99780 * 179.97438 * 10 9 7 13 13 O 1.42904 * 109.47261 * 180.02562 * 12 10 9 14 14 C 1.35895 * 117.00202 * 179.97438 * 13 12 10 15 15 C 1.38763 * 120.04251 * 179.97438 * 14 13 12 16 16 C 1.38142 * 119.99431 * 180.02562 * 15 14 13 17 17 C 1.38251 * 120.07778 * 0.26239 * 16 15 14 18 18 N 1.48019 * 119.95459 * 179.72171 * 17 16 15 19 19 O 1.21796 * 120.00027 * 359.97438 * 18 17 16 20 20 O 1.21799 * 119.99663 * 179.97438 * 18 17 16 21 21 C 1.38473 * 120.08702 * 359.48449 * 17 16 15 22 22 F 1.35095 * 120.00135 * 180.23634 * 21 17 16 23 23 C 1.38388 * 120.00405 * 0.51149 * 21 17 16 24 24 H 0.97002 * 119.99983 * 0.02562 * 1 2 3 25 25 H 0.96994 * 120.00098 * 359.97438 * 9 7 2 26 26 H 1.08995 * 109.46913 * 59.99851 * 12 10 9 27 27 H 1.08999 * 109.47186 * 300.00025 * 12 10 9 28 28 H 1.07999 * 120.00841 * 0.02562 * 15 14 13 29 29 H 1.08002 * 119.95749 * 179.97438 * 16 15 14 30 30 H 1.07994 * 120.04338 * 179.77075 * 23 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2032 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 0.0000 13 8 2.1723 -5.9491 0.0005 14 6 1.6529 -7.2048 0.0016 15 6 2.4974 -8.3059 0.0016 16 6 1.9683 -9.5820 0.0022 17 6 0.5979 -9.7639 -0.0027 18 7 0.0339 -11.1324 -0.0083 19 8 0.7771 -12.0973 -0.0090 20 8 -1.1734 -11.2935 -0.0121 21 6 -0.2479 -8.6675 0.0026 22 9 -1.5869 -8.8472 0.0027 23 6 0.2783 -7.3875 0.0021 24 1 -0.4850 0.8401 -0.0004 25 1 0.3534 -2.3906 0.0002 26 1 0.6168 -4.9208 -0.8896 27 1 0.6174 -4.9204 0.8903 28 1 3.5682 -8.1654 0.0012 29 1 2.6262 -10.4386 0.0018 30 1 -0.3808 -6.5320 0.0025 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325175.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:46 Heat of formation + Delta-G solvation = -92.463674 kcal Electronic energy + Delta-G solvation = -21002.528084 eV Core-core repulsion = 17102.580281 eV Total energy + Delta-G solvation = -3899.947803 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -49.61398 -42.24886 -40.69903 -38.61001 -37.42071 -36.65847 -34.22019 -31.69635 -31.62584 -31.41646 -28.69247 -26.24253 -24.90979 -23.56131 -22.65375 -19.94307 -19.69367 -18.89062 -18.81916 -18.24434 -17.77699 -17.15702 -16.67279 -16.52019 -15.96254 -15.87959 -14.99505 -14.88625 -14.38673 -14.24360 -13.86036 -13.82262 -13.04705 -12.66288 -12.52263 -11.92220 -11.75563 -11.71280 -11.44776 -11.30612 -11.26828 -11.17618 -10.56524 -10.44299 -9.77465 -9.74138 -9.13163 -8.76394 -8.26237 -6.66302 -4.09005 -0.39292 0.37429 1.08108 1.16699 2.52315 2.76257 3.01368 3.14484 3.19917 3.26319 3.50859 3.82357 3.98916 4.16157 4.22182 4.54824 4.76863 4.90382 4.93104 5.01642 5.19296 5.21645 5.30147 5.49193 5.70649 5.84175 6.19220 6.77193 7.32812 7.48374 7.75360 8.28477 8.90256 9.19319 9.67912 10.50465 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.044642 B = 0.002970 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.055933 B = 9424.726546 C =10036.626391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.028 3.972 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.306 4.306 8 H 0.107 0.893 9 N -0.547 5.547 10 C 0.435 3.565 11 O -0.573 6.573 12 C 0.040 3.960 13 O -0.259 6.259 14 C 0.225 3.775 15 C -0.161 4.161 16 C 0.010 3.990 17 C -0.136 4.136 18 N 0.041 4.959 19 O -0.166 6.166 20 O -0.160 6.160 21 C 0.218 3.782 22 F -0.100 7.100 23 C -0.259 4.259 24 H 0.276 0.724 25 H 0.395 0.605 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -14.295 0.025 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.761 3.239 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.435 4.435 8 H 0.125 0.875 9 N -0.184 5.184 10 C 0.219 3.781 11 O -0.457 6.457 12 C -0.038 4.038 13 O -0.167 6.167 14 C 0.174 3.826 15 C -0.180 4.180 16 C -0.009 4.009 17 C -0.221 4.221 18 N 0.558 4.442 19 O -0.380 6.380 20 O -0.375 6.375 21 C 0.197 3.803 22 F -0.078 7.078 23 C -0.279 4.279 24 H 0.086 0.914 25 H 0.228 0.772 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.182 0.818 29 H 0.186 0.814 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 0.016 -13.391 0.032 13.391 hybrid contribution -1.014 0.545 -0.009 1.151 sum -0.997 -12.846 0.024 12.884 Atomic orbital electron populations 1.69598 1.06053 1.28777 1.49037 1.25333 0.95709 0.99999 0.96505 0.85780 0.79280 0.80196 0.78639 1.20127 1.20684 1.19175 1.19740 0.93549 0.81599 1.48571 0.87483 1.41689 1.09355 1.04071 1.63274 1.19087 0.88310 0.83779 0.86920 1.90596 1.13264 1.86488 1.55392 1.22858 0.91897 0.85902 1.03185 1.86327 1.35201 1.10745 1.84454 1.19267 0.90566 0.86531 0.86215 1.20559 1.01882 0.88189 1.07404 1.20731 0.91219 0.98854 0.90071 1.21049 0.94699 0.81403 1.24998 1.43238 1.00969 1.02454 0.97559 1.94522 1.58137 1.31219 1.54092 1.94603 0.96899 1.92352 1.53670 1.16956 0.77630 0.91627 0.94114 1.91678 1.28095 1.95921 1.92065 1.21376 0.95915 0.96675 1.13952 0.91427 0.77160 0.89354 0.89363 0.81763 0.81385 0.81562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.56 13.05 55.50 0.72 -21.84 16 2 C 0.03 0.69 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 19.63 29.55 -169.99 -5.02 14.61 16 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.31 -7.90 9.68 -14.93 -0.14 -8.04 16 8 H 0.11 2.91 7.16 -52.49 -0.38 2.54 16 9 N -0.55 -12.54 5.29 -10.96 -0.06 -12.60 16 10 C 0.43 9.30 7.86 -10.99 -0.09 9.21 16 11 O -0.57 -14.73 16.08 -14.36 -0.23 -14.96 16 12 C 0.04 0.59 5.22 36.01 0.19 0.77 16 13 O -0.26 -3.82 9.67 -39.32 -0.38 -4.20 16 14 C 0.22 2.55 6.69 -39.23 -0.26 2.28 16 15 C -0.16 -1.50 9.99 -39.42 -0.39 -1.89 16 16 C 0.01 0.09 9.55 -39.61 -0.38 -0.29 16 17 C -0.14 -1.55 6.86 -79.85 -0.55 -2.10 16 18 N 0.04 0.55 4.45 34.01 0.15 0.70 16 19 O -0.17 -2.22 18.44 -29.46 -0.54 -2.76 16 20 O -0.16 -2.38 17.42 -29.46 -0.51 -2.89 16 21 C 0.22 2.48 7.25 -39.44 -0.29 2.19 16 22 F -0.10 -1.24 15.47 2.25 0.03 -1.20 16 23 C -0.26 -2.69 9.02 -39.36 -0.35 -3.04 16 24 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 25 H 0.39 8.41 7.90 -40.82 -0.32 8.09 16 26 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 27 H 0.09 1.06 7.66 -51.93 -0.40 0.66 16 28 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.17 1.11 7.61 -52.49 -0.40 0.71 16 30 H 0.17 1.45 6.30 -52.49 -0.33 1.12 16 LS Contribution 288.99 15.07 4.36 4.36 Total: -1.00 -30.58 288.99 -5.63 -36.20 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -1.78 Total: 4.89 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -2.36 Total: -0.31 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.82 Total: -33.73 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -1.67 Total: -24.82 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.03 Total: -1.20 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -5.02 Total: 14.61 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.58 -5.63 -36.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325175.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.262 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds