Wall clock time and date at job start Wed Apr 15 2020 11:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.35896 * 117.00039 * 180.02562 * 13 12 10 15 15 C 1.38715 * 120.04165 * 359.97438 * 14 13 12 16 16 C 1.38346 * 119.92071 * 179.97438 * 15 14 13 17 17 F 1.35098 * 119.99292 * 179.97438 * 16 15 14 18 18 C 1.38515 * 120.00127 * 0.02562 * 16 15 14 19 19 C 1.38201 * 120.08965 * 359.97438 * 18 16 15 20 20 N 1.48004 * 119.96121 * 179.97438 * 19 18 16 21 21 O 1.21806 * 120.00218 * 0.02562 * 20 19 18 22 22 O 1.21806 * 120.00207 * 179.97438 * 20 19 18 23 23 C 1.38178 * 120.08146 * 359.74829 * 19 18 16 24 24 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 27 27 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 28 28 H 1.08006 * 120.04125 * 359.95635 * 15 14 13 29 29 H 1.08004 * 119.95244 * 179.97438 * 18 16 15 30 30 H 1.07997 * 120.00833 * 180.27599 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1727 -5.9490 -0.0027 14 6 1.6534 -7.2048 -0.0038 15 6 0.2783 -7.3877 -0.0038 16 6 -0.2476 -8.6673 -0.0055 17 9 -1.5866 -8.8470 -0.0050 18 6 0.5985 -9.7639 -0.0065 19 6 1.9685 -9.5820 -0.0065 20 7 2.8700 -10.7558 -0.0070 21 8 2.4044 -11.8814 -0.0080 22 8 4.0776 -10.5964 -0.0074 23 6 2.4977 -8.3056 -0.0106 24 1 -0.4851 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6170 -4.9201 -0.8920 27 1 0.6177 -4.9213 0.8880 28 1 -0.3809 -6.5322 -0.0023 29 1 0.1870 -10.7625 -0.0074 30 1 3.5684 -8.1648 -0.0151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135361813.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:50 Heat of formation + Delta-G solvation = -90.316784 kcal Electronic energy + Delta-G solvation = -20908.790567 eV Core-core repulsion = 17008.935861 eV Total energy + Delta-G solvation = -3899.854706 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.54103 -42.45501 -40.61654 -38.57776 -37.37159 -36.81617 -34.19097 -32.05039 -31.58253 -30.98537 -28.45721 -26.94878 -24.82049 -23.35263 -22.70397 -20.14669 -19.74079 -18.99199 -18.25425 -17.81867 -17.74406 -17.08091 -16.86844 -16.50672 -16.42589 -15.96739 -15.66292 -14.89623 -14.40394 -14.02916 -13.80273 -13.43309 -12.87678 -12.68904 -12.58301 -11.99078 -11.78076 -11.74060 -11.50522 -11.41515 -11.36944 -11.16274 -10.49880 -10.42078 -9.86866 -9.76152 -8.94445 -8.72598 -8.23628 -6.64217 -4.06539 -0.57044 0.43906 0.95999 0.98684 2.63038 2.73586 3.01824 3.16520 3.23844 3.43354 3.53853 3.99800 4.13415 4.15486 4.24079 4.26774 4.61849 4.85433 4.95803 5.01715 5.20800 5.30587 5.33770 5.44393 5.67547 5.86606 6.08160 6.84975 7.35300 7.36401 7.78399 8.31499 8.93017 9.22192 9.71132 10.52737 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.003160 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.241961 B = 8857.963052 C = 9740.059921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.304 4.304 8 H 0.108 0.892 9 N -0.549 5.549 10 C 0.436 3.564 11 O -0.572 6.572 12 C 0.044 3.956 13 O -0.263 6.263 14 C 0.178 3.822 15 C -0.204 4.204 16 C 0.152 3.848 17 F -0.118 7.118 18 C -0.143 4.143 19 C 0.023 3.977 20 N 0.028 4.972 21 O -0.152 6.152 22 O -0.143 6.143 23 C -0.101 4.101 24 H 0.275 0.725 25 H 0.394 0.606 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.163 0.837 29 H 0.165 0.835 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -15.174 -0.014 15.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.433 4.433 8 H 0.126 0.874 9 N -0.186 5.186 10 C 0.220 3.780 11 O -0.455 6.455 12 C -0.035 4.035 13 O -0.173 6.173 14 C 0.129 3.871 15 C -0.224 4.224 16 C 0.132 3.868 17 F -0.096 7.096 18 C -0.163 4.163 19 C -0.060 4.060 20 N 0.550 4.450 21 O -0.369 6.369 22 O -0.362 6.362 23 C -0.121 4.121 24 H 0.085 0.915 25 H 0.228 0.772 26 H 0.104 0.896 27 H 0.104 0.896 28 H 0.181 0.819 29 H 0.183 0.817 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -3.784 -14.355 -0.013 14.846 hybrid contribution -0.659 0.551 0.001 0.859 sum -4.443 -13.804 -0.012 14.502 Atomic orbital electron populations 1.69603 1.06049 1.28612 1.49333 1.25324 0.95705 0.99975 0.96590 0.85730 0.79790 0.80548 0.77916 1.18980 1.20517 1.20512 1.19796 0.93588 0.81606 1.48323 0.87434 1.41690 1.09318 1.04068 1.63495 1.19114 0.88331 0.83798 0.86752 1.90602 1.13284 1.86495 1.55149 1.22793 0.91887 0.85924 1.02886 1.86314 1.34694 1.10220 1.86111 1.18373 0.89921 0.86187 0.92642 1.21747 0.95665 0.98181 1.06809 1.16788 0.77715 0.92228 1.00107 1.91596 1.28645 1.96002 1.93405 1.20664 0.90531 1.01226 1.03911 1.20223 0.89439 0.85622 1.10700 1.43404 1.01609 1.02096 0.97883 1.94552 1.80237 1.08994 1.53078 1.94593 0.96439 1.92589 1.52536 1.20169 1.03131 0.87468 1.01298 0.91533 0.77204 0.89595 0.89603 0.81929 0.81706 0.81170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.70 13.05 55.50 0.72 -21.97 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 3 Si 0.93 19.80 29.55 -169.99 -5.02 14.78 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 6 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 7 C -0.30 -7.94 9.68 -14.93 -0.14 -8.08 16 8 H 0.11 2.97 7.16 -52.48 -0.38 2.59 16 9 N -0.55 -12.71 5.29 -10.96 -0.06 -12.76 16 10 C 0.44 9.49 7.86 -10.99 -0.09 9.41 16 11 O -0.57 -15.01 16.08 -14.37 -0.23 -15.24 16 12 C 0.04 0.66 5.22 36.01 0.19 0.84 16 13 O -0.26 -4.10 9.67 -39.32 -0.38 -4.48 16 14 C 0.18 2.15 6.69 -39.22 -0.26 1.89 16 15 C -0.20 -2.03 9.02 -39.37 -0.35 -2.38 16 16 C 0.15 1.44 7.30 -39.44 -0.29 1.15 16 17 F -0.12 -1.13 17.27 2.25 0.04 -1.09 16 18 C -0.14 -1.37 9.53 -39.49 -0.38 -1.74 16 19 C 0.02 0.26 6.85 -79.99 -0.55 -0.29 16 20 N 0.03 0.35 4.45 33.94 0.15 0.50 16 21 O -0.15 -1.94 18.44 -29.46 -0.54 -2.48 16 22 O -0.14 -1.93 18.44 -29.46 -0.54 -2.48 16 23 C -0.10 -1.17 9.49 -39.42 -0.37 -1.55 16 24 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 25 H 0.39 8.46 7.90 -40.82 -0.32 8.14 16 26 H 0.09 1.04 7.66 -51.93 -0.40 0.65 16 27 H 0.09 1.04 7.66 -51.93 -0.40 0.64 16 28 H 0.16 1.33 6.30 -52.48 -0.33 1.00 16 29 H 0.17 1.31 7.60 -52.48 -0.40 0.91 16 30 H 0.17 1.94 7.61 -52.49 -0.40 1.54 16 LS Contribution 290.89 15.07 4.38 4.38 Total: -1.00 -29.87 290.89 -5.58 -35.45 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -1.76 Total: 5.56 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.34 Total: -0.17 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.82 Total: -34.24 kcal Atomic # 8 Polarization: -22.98 SS G_CDS: -1.70 Total: -24.68 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.87 -5.58 -35.45 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135361813.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.867 kcal (2) G-P(sol) polarization free energy of solvation -29.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds