Wall clock time and date at job start Wed Apr 15 2020 11:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86803 * 119.99611 * 2 1 4 4 H 1.48501 * 109.46948 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47378 * 300.00515 * 3 2 1 6 6 H 1.48501 * 109.47174 * 60.00430 * 3 2 1 7 7 C 1.38948 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00263 * 179.97438 * 7 2 1 9 9 N 1.37097 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99944 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99983 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00037 * 180.02562 * 10 9 7 13 13 O 1.42905 * 109.46972 * 180.02562 * 12 10 9 14 14 C 1.35896 * 117.00039 * 180.02562 * 13 12 10 15 15 C 1.38715 * 120.04165 * 359.97438 * 14 13 12 16 16 C 1.38346 * 119.92071 * 179.97438 * 15 14 13 17 17 F 1.35098 * 119.99292 * 179.97438 * 16 15 14 18 18 C 1.38515 * 120.00127 * 0.02562 * 16 15 14 19 19 C 1.38201 * 120.08965 * 359.97438 * 18 16 15 20 20 N 1.48004 * 119.96121 * 179.97438 * 19 18 16 21 21 O 1.21806 * 120.00218 * 0.02562 * 20 19 18 22 22 O 1.21806 * 120.00207 * 179.97438 * 20 19 18 23 23 C 1.38178 * 120.08146 * 359.74829 * 19 18 16 24 24 H 0.97002 * 120.00294 * 359.97438 * 1 2 3 25 25 H 0.96996 * 120.00211 * 0.02562 * 9 7 2 26 26 H 1.09000 * 109.47247 * 60.00371 * 12 10 9 27 27 H 1.09001 * 109.47358 * 299.99798 * 12 10 9 28 28 H 1.08006 * 120.04125 * 359.95635 * 15 14 13 29 29 H 1.08004 * 119.95244 * 179.97438 * 18 16 15 30 30 H 1.07997 * 120.00833 * 180.27599 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 -0.0006 5 1 1.8891 2.3966 -1.2124 6 1 1.8893 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2104 -3.5577 -0.0021 12 6 1.2440 -4.8629 -0.0022 13 8 2.1727 -5.9490 -0.0027 14 6 1.6534 -7.2048 -0.0038 15 6 0.2783 -7.3877 -0.0038 16 6 -0.2476 -8.6673 -0.0055 17 9 -1.5866 -8.8470 -0.0050 18 6 0.5985 -9.7639 -0.0065 19 6 1.9685 -9.5820 -0.0065 20 7 2.8700 -10.7558 -0.0070 21 8 2.4044 -11.8814 -0.0080 22 8 4.0776 -10.5964 -0.0074 23 6 2.4977 -8.3056 -0.0106 24 1 -0.4851 0.8400 0.0004 25 1 0.3535 -2.3906 -0.0005 26 1 0.6170 -4.9201 -0.8920 27 1 0.6177 -4.9213 0.8880 28 1 -0.3809 -6.5322 -0.0023 29 1 0.1870 -10.7625 -0.0074 30 1 3.5684 -8.1648 -0.0151 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135361813.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:46:49 Heat of formation + Delta-G solvation = -108.498392 kcal Electronic energy + Delta-G solvation = -20909.578981 eV Core-core repulsion = 17008.935861 eV Total energy + Delta-G solvation = -3900.643120 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 284.069 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.29336 -43.41548 -41.64137 -40.10567 -38.56104 -37.80736 -36.07581 -33.44281 -32.91126 -31.96585 -29.72717 -27.95843 -26.56313 -24.20684 -23.69968 -21.56385 -20.88836 -20.13165 -19.91301 -18.77754 -18.76311 -18.22184 -17.71195 -17.53899 -17.43058 -16.99664 -16.84533 -16.56787 -15.85054 -15.36456 -15.28746 -14.59397 -14.13841 -13.78412 -13.57794 -13.38993 -13.10313 -12.98204 -12.77932 -12.49402 -12.47084 -12.38918 -12.37328 -12.13108 -11.60593 -10.68461 -10.53133 -10.12383 -9.84855 -8.54584 -6.04099 -1.49156 -0.39133 0.04130 0.05390 1.33414 1.41285 1.50664 1.61858 1.86162 1.89637 2.29944 2.61514 3.07093 3.11859 3.26642 3.33825 3.44423 3.52634 3.89182 4.01793 4.13363 4.23118 4.35346 4.51297 4.58601 4.85341 5.14899 5.36489 5.78854 5.95354 6.34753 6.47986 7.03182 7.39729 7.94704 8.62152 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031199 B = 0.003160 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.241961 B = 8857.963052 C = 9740.059921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.004 4.004 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.556 5.556 10 C 0.432 3.568 11 O -0.624 6.624 12 C 0.055 3.945 13 O -0.296 6.296 14 C 0.164 3.836 15 C -0.185 4.185 16 C 0.158 3.842 17 F -0.113 7.113 18 C -0.125 4.125 19 C 0.016 3.984 20 N 0.029 4.971 21 O -0.141 6.141 22 O -0.179 6.179 23 C -0.105 4.105 24 H 0.281 0.719 25 H 0.403 0.597 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.187 0.813 29 H 0.185 0.815 30 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.323 -15.714 -0.014 16.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.205 4.205 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.193 5.193 10 C 0.219 3.781 11 O -0.511 6.511 12 C -0.022 4.022 13 O -0.207 6.207 14 C 0.116 3.884 15 C -0.204 4.204 16 C 0.137 3.863 17 F -0.091 7.091 18 C -0.145 4.145 19 C -0.067 4.067 20 N 0.549 4.451 21 O -0.362 6.362 22 O -0.389 6.389 23 C -0.125 4.125 24 H 0.090 0.910 25 H 0.238 0.762 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.204 0.796 29 H 0.203 0.797 30 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.914 -14.883 -0.013 16.015 hybrid contribution -0.078 0.581 0.000 0.586 sum -5.992 -14.303 -0.012 15.507 Atomic orbital electron populations 1.69639 1.06697 1.29638 1.49184 1.26000 0.96543 1.02274 0.95715 0.84888 0.78090 0.77058 0.78452 1.19877 1.19498 1.19488 1.19695 0.92838 0.83585 1.50605 0.90183 1.41697 1.09614 1.04031 1.63984 1.20254 0.88095 0.85690 0.84073 1.90569 1.16016 1.87759 1.56792 1.22639 0.90783 0.82424 1.06374 1.86244 1.35753 1.11425 1.87315 1.18291 0.90847 0.84715 0.94513 1.21920 0.94754 0.99259 1.04494 1.16664 0.77817 0.91895 0.99875 1.91623 1.28228 1.95938 1.93321 1.20891 0.89629 1.02398 1.01538 1.20159 0.89725 0.84727 1.12085 1.43586 1.01660 1.02435 0.97465 1.94525 1.80094 1.09547 1.52075 1.94606 0.97116 1.92770 1.54433 1.20144 1.03049 0.87878 1.01449 0.90954 0.76235 0.85937 0.85946 0.79585 0.79745 0.81984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.45 13.05 21.66 0.28 -45.17 16 2 C 0.00 -0.20 5.50 84.93 0.47 0.26 16 3 Si 0.99 40.42 29.55 68.60 2.03 42.44 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.34 -18.00 9.68 84.04 0.81 -17.18 16 8 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 9 N -0.56 -25.80 5.29 -306.98 -1.62 -27.42 16 10 C 0.43 18.83 7.86 87.66 0.69 19.52 16 11 O -0.62 -33.78 16.08 15.96 0.26 -33.53 16 12 C 0.06 1.54 5.22 71.24 0.37 1.91 16 13 O -0.30 -8.88 9.67 -73.35 -0.71 -9.59 16 14 C 0.16 3.66 6.69 22.50 0.15 3.81 16 15 C -0.18 -3.01 9.02 22.41 0.20 -2.80 16 16 C 0.16 2.41 7.30 22.36 0.16 2.57 16 17 F -0.11 -1.69 17.27 44.97 0.78 -0.92 16 18 C -0.12 -2.00 9.53 22.33 0.21 -1.79 16 19 C 0.02 0.33 6.85 36.35 0.25 0.58 16 20 N 0.03 0.71 4.45 -46.53 -0.21 0.50 16 21 O -0.14 -3.37 18.44 18.88 0.35 -3.02 16 22 O -0.18 -4.91 18.44 18.88 0.35 -4.56 16 23 C -0.11 -2.37 9.49 22.37 0.21 -2.16 16 24 H 0.28 13.08 8.31 -92.71 -0.77 12.31 16 25 H 0.40 16.98 7.90 -92.71 -0.73 16.25 16 26 H 0.12 2.52 7.66 -2.39 -0.02 2.51 16 27 H 0.12 2.52 7.66 -2.39 -0.02 2.50 16 28 H 0.19 2.12 6.30 -2.91 -0.02 2.10 16 29 H 0.19 2.24 7.60 -2.91 -0.02 2.22 16 30 H 0.16 3.84 7.61 -2.91 -0.02 3.82 16 Total: -1.00 -66.14 290.89 5.53 -60.61 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.50 Total: 15.93 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 3.53 Total: 4.73 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.55 Total: -72.09 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: 0.24 Total: -50.71 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.78 Total: -0.92 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.44 kcal Total: -66.14 5.53 -60.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135361813.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.892 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds